Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g49480 | OGI:04087650 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:29513879-29514721 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACCTGTGACCTGTCCACTCCTGCCTGACTGCCTTACTGTCGAAGTCGCCAGCCGTGATGAACTTCCAAGATTTGATCTGGTTCAGTTCAGTGAATTCCCCGGTTGAACCCGCAAACCCCACATATATCTCCTCCGAAAGATAGCGTGATAGATCAATGGGCCAAGCCTGAACAACAACATGCAGCCCTCTGGTACTCAACTGCATCGCTTCTACTATCAACAATCGAAACCTGCTTTTGTAGCTGATACTGACGAACAAATCGAAACCACTCGAGAGGAAGATAGAAACGTTACTGAGTGGATACTGCACGACGGATCTGATGCCGTTGACGTCGAGCCCGACATGGTTGCTGTCAAGATCCTCGTCGTAGCTCTTCCTCGTGTCGAATTCCACGGCCACAATCCGGTTTGCCGGCGACCCGTCAGTCTGCTCGTTGGCGATGCCGAGCCACTGGCCGCTGCTGCCGCGAGGCGACGAGAGGTTGCTGGTGAGGATGAAGGCTAGGCCTTCACCGGTCTCGTTCTGCTGCTGGTTTGGGAGGATGTTCAGCACAAACTCTGTCCTGAAGGATGCTACTGTTCTCTTCTTGCTATCCCACAGTCTGAGTGTCTCCCTAGTGTAGCATACTCTCCCGGATTGGTTAGTGATGTTCCCGGTGCTTAGTGTGATCTGCAGGGATCCATTGGCGATCCCTGAGCCTGGGCTGAAGCTGAAATCATCCACGCTGGTTGTGTCAAAGTTGGGGAAATTGAAGTGCAAGCAACTGCAGGTGCTGCCTAGGATCTGAAGAGATGTTGAAGCTAGCAGAGAGAGGCAGAGGATGCTACTGGGAAGTTTCAT
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| CDS seq | ATGAAACTTCCCAGTAGCATCCTCTGCCTCTCTCTGCTAGCTTCAACATCTCTTCAGATCCTAGGCAGCACCTGCAGTTGCTTGCACTTCAATTTCCCCAACTTTGACACAACCAGCGTGGATGATTTCAGCTTCAGCCCAGGCTCAGGGATCGCCAATGGATCCCTGCAGATCACACTAAGCACCGGGAACATCACTAACCAATCCGGGAGAGTATGCTACACTAGGGAGACACTCAGACTGTGGGATAGCAAGAAGAGAACAGTAGCATCCTTCAGGACAGAGTTTGTGCTGAACATCCTCCCAAACCAGCAGCAGAACGAGACCGGTGAAGGCCTAGCCTTCATCCTCACCAGCAACCTCTCGTCGCCTCGCGGCAGCAGCGGCCAGTGGCTCGGCATCGCCAACGAGCAGACTGACGGGTCGCCGGCAAACCGGATTGTGGCCGTGGAATTCGACACGAGGAAGAGCTACGACGAGGATCTTGACAGCAACCATGTCGGGCTCGACGTCAACGGCATCAGATCCGTCGTGCAGTATCCACTCAGTAACGTTTCTATCTTCCTCTCGAGTGGTTTCGATTTGTTCGTCAGTATCAGCTACAAAAGCAGGTTTCGATTGTTGATAGTAGAAGCGATGCAGTTGAGTACCAGAGGGCTGCATGTTGTTGTTCAGGCTTGGCCCATTGATCTATCACGCTATCTTTCGGAGGAGATATATGTGGGGTTTGCGGGTTCAACCGGGGAATTCACTGAACTGAACCAGATCAAATCTTGGAAGTTCATCACGGCTGGCGACTTCGACAGTAAGGCAGTCAGGCAGGAGTGGACAGGTCACAGGTGA
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| Protein seq | MKLPSSILCLSLLASTSLQILGSTCSCLHFNFPNFDTTSVDDFSFSPGSGIANGSLQITLSTGNITNQSGRVCYTRETLRLWDSKKRTVASFRTEFVLNILPNQQQNETGEGLAFILTSNLSSPRGSSGQWLGIANEQTDGSPANRIVAVEFDTRKSYDEDLDSNHVGLDVNGIRSVVQYPLSNVSIFLSSGFDLFVSISYKSRFRLLIVEAMQLSTRGLHVVVQAWPIDLSRYLSEEIYVGFAGSTGEFTELNQIKSWKFITAGDFDSKAVRQEWTGHR |
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| Function | Probable L-type lectin-domain containing receptor kinase S.5 [UniProtKB/Swiss-Prot:Q9FG33] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g49480 | LOC_Os04g49480.1 | Chr04 | 29513879 | 29514721 | - | MSU_osa1r7 | ||
| CDS seq | ATGAAACTTCCCAGTAGCATCCTCTGCCTCTCTCTGCTAGCTTCAACATCTCTTCAGATCCTAGGCAGCACCTGCAGTTGCTTGCACTTCAATTTCCCCAACTTTGACACAACCAGCGTGGATGATTTCAGCTTCAGCCCAGGCTCAGGGATCGCCAATGGATCCCTGCAGATCACACTAAGCACCGGGAACATCACTAACCAATCCGGGAGAGTATGCTACACTAGGGAGACACTCAGACTGTGGGATAGCAAGAAGAGAACAGTAGCATCCTTCAGGACAGAGTTTGTGCTGAACATCCTCCCAAACCAGCAGCAGAACGAGACCGGTGAAGGCCTAGCCTTCATCCTCACCAGCAACCTCTCGTCGCCTCGCGGCAGCAGCGGCCAGTGGCTCGGCATCGCCAACGAGCAGACTGACGGGTCGCCGGCAAACCGGATTGTGGCCGTGGAATTCGACACGAGGAAGAGCTACGACGAGGATCTTGACAGCAACCATGTCGGGCTCGACGTCAACGGCATCAGATCCGTCGTGCAGTATCCACTCAGTAACGTTTCTATCTTCCTCTCGAGTGGTTTCGATTTGTTCGTCAGTATCAGCTACAAAAGCAGGTTTCGATTGTTGATAGTAGAAGCGATGCAGTTGAGTACCAGAGGGCTGCATGTTGTTGTTCAGGCTTGGCCCATTGATCTATCACGCTATCTTTCGGAGGAGATATATGTGGGGTTTGCGGGTTCAACCGGGGAATTCACTGAACTGAACCAGATCAAATCTTGGAAGTTCATCACGGCTGGCGACTTCGACAGTAAGGCAGTCAGGCAGGAGTGGACAGGTCACAGGTGA
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| Protein seq | MKLPSSILCLSLLASTSLQILGSTCSCLHFNFPNFDTTSVDDFSFSPGSGIANGSLQITLSTGNITNQSGRVCYTRETLRLWDSKKRTVASFRTEFVLNILPNQQQNETGEGLAFILTSNLSSPRGSSGQWLGIANEQTDGSPANRIVAVEFDTRKSYDEDLDSNHVGLDVNGIRSVVQYPLSNVSIFLSSGFDLFVSISYKSRFRLLIVEAMQLSTRGLHVVVQAWPIDLSRYLSEEIYVGFAGSTGEFTELNQIKSWKFITAGDFDSKAVRQEWTGHR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0531500 | SBH | 5.997754 | 4.817526 | 1.337930 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g38960 | SBH | 0.0 | 0.0 | 0.103485 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0531500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024390 | RBH | 0.000000 | 3.788354 | 0.847318 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0025140 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0024830 | RBH | 0.170298 | 5.227032 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024610 | RBH | 0.0 | 0.153970 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0024800 | RBH | 0.0 | 6.245302 | 0.547848 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0465800 | RBH | 0.360952 | 2.5640425 | 0.6171 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023570 | RBH | 0.000000 | 0.207958 | 0.053026 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0468800 | SBH | 0.638508 | 0.4256345 | 0.0134695 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0024050 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0023850 | RBH | 0.0 | 1.011958 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0023980 | RBH | 0.0 | 4.009275 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024380 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0024580 | RBH | 0.0 | 1.730681 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G023830 | RBH | 0.0 | 2.124039 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0023740 | RBH | 0.0 | 1.076460 | 0.000000 |
