Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g49260 | OGI:04087380 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:29408862-29409617 | ||||||||
| Gene Symbol | HPP6, OsHPP6, OsaHPP06, HPP06 | ||||||||||
| DNA seq | GTCGGTACCACTCACTATACGTGGATGTCAGTTCTGCACTCACGGCATCACAGCAATCTGCCAATCTACATACTATCAACTACCCAAAAAAGACAGTAACAGAGTACATTTATTCGAAACCCCGGTGCCGCTCCTGAATCGCACTAGCCGGCGGCCCGTGTTCGCGTGACAGAAACTTTTGAGTTCCGGATCACAGCCGGATCAGTGGAAAGAGCTTCTTCCAAGACTTCCTAAACCTGTACGCGGTGAACGCTTGCAGGTAGTGCTTACGAGCATCTGCCGGCATCGAGTCCTCCCCGAGGTCGGGCTGGTCGGCGCCCCAGAACCGCGCCGCTCGCCGCTTCTTCCGAACGGCCGCGAGCACGTCGTCGCGGTTGCAGATCCCCCACACCGTCACCTTCTGCTGCTGGTAGTCCACCTGAACCGAGTGTATCCCTGCAGCGCATCCAAACAATTGAACATGCCATGCGATCAGTTCACCGATCAAACTCATTGTATTTTGCTTCAGGGATCAGTTTCTGATCTGTTCATGTTTCACCGTGAAAATTTCAGATGCGTAGAATGTATAGGTATGTACCTCTCAGATGCGACAGGGCCTTCTTGATCTTCTTCTCGCAGCCGTAGGAGTAGAGTGGCACCTTCATCTCCACGTACTGCGCCTCGATTTTGCCTGCGGCCAGGACGATTTGCATGTCACCCATCTGATTTTAGCCGGCAAAACCTAGGCCGATCGAGAGGGATCAGCGGAGTGCAGAT
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| CDS seq | ATGGGTGACATGCAAATCGTCCTGGCCGCAGGCAAAATCGAGGCGCAGTACGTGGAGATGAAGGTGCCACTCTACTCCTACGGCTGCGAGAAGAAGATCAAGAAGGCCCTGTCGCATCTGAGAGGGATACACTCGGTTCAGGTGGACTACCAGCAGCAGAAGGTGACGGTGTGGGGGATCTGCAACCGCGACGACGTGCTCGCGGCCGTTCGGAAGAAGCGGCGAGCGGCGCGGTTCTGGGGCGCCGACCAGCCCGACCTCGGGGAGGACTCGATGCCGGCAGATGCTCGTAAGCACTACCTGCAAGCGTTCACCGCGTACAGGTTTAGGAAGTCTTGGAAGAAGCTCTTTCCACTGATCCGGCTGTGA |
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| Protein seq | MGDMQIVLAAGKIEAQYVEMKVPLYSYGCEKKIKKALSHLRGIHSVQVDYQQQKVTVWGICNRDDVLAAVRKKRRAARFWGADQPDLGEDSMPADARKHYLQAFTAYRFRKSWKKLFPLIRL |
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| Function | Heavy metal-associated isoprenylated plant protein 28 [UniProtKB/Swiss-Prot:F4IC29] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g49260 | LOC_Os04g49260.1 | Chr04 | 29408862 | 29409617 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGTGACATGCAAATCGTCCTGGCCGCAGGCAAAATCGAGGCGCAGTACGTGGAGATGAAGGTGCCACTCTACTCCTACGGCTGCGAGAAGAAGATCAAGAAGGCCCTGTCGCATCTGAGAGGGATACACTCGGTTCAGGTGGACTACCAGCAGCAGAAGGTGACGGTGTGGGGGATCTGCAACCGCGACGACGTGCTCGCGGCCGTTCGGAAGAAGCGGCGAGCGGCGCGGTTCTGGGGCGCCGACCAGCCCGACCTCGGGGAGGACTCGATGCCGGCAGATGCTCGTAAGCACTACCTGCAAGCGTTCACCGCGTACAGGTTTAGGAAGTCTTGGAAGAAGCTCTTTCCACTGATCCGGCTGTGA
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| Protein seq | MGDMQIVLAAGKIEAQYVEMKVPLYSYGCEKKIKKALSHLRGIHSVQVDYQQQKVTVWGICNRDDVLAAVRKKRRAARFWGADQPDLGEDSMPADARKHYLQAFTAYRFRKSWKKLFPLIRL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.375260 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0581800 | RBH | 0.0 | 0.0 | 1.399809 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g02860 | SBH | 0.760422 | 0.128910 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0581800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024220 | RBH | 0.0 | 0.0 | 3.095313 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0024960 | RBH | 0.0 | 1.734078 | 0.811290 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0024660 | RBH | 0.0 | 0.0 | 2.156669 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024440 | RBH | 0.0 | 0.196274 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0024630 | RBH | 0.0 | 0.000000 | 3.995609 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0464300 | RBH | 0.4981505 | 0.3424555 | 7.7879155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023410 | SBH | 0.0 | 0.000000 | 0.414743 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0467200 | RBH | 0.487856 | 0.110908 | 2.3054745 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0023870 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0023710 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0023850 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024240 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0024440 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G023660 | RBH | 0.0 | 3.355092 | 1.069705 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0023600 | RBH | 0.0 | 0.000000 | 6.006612 |
