Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g49230 | OGI:04087270 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:29366456-29368515 | ||||||||
| Gene Symbol | RAVL1, RAVL, OsRAVL1 | ||||||||||
| DNA seq | TATCTAAACCCAAATAAAAACATTAATAATTCATTAATTCGCCTAATTTTTCTCTATATATTCTCAAACAAACATAAGAATGTGAATGGCCAAAAACAAAAAAGGAAACCAAAAGTTATGCTAACTCTATGATCAAAGTTATGATGGAGAATTGCAAAAGGTGGAGAAGTAGAAGAAGGCAGCAGACGGAAGATGGATTTTTTGAACTTTCCTTTGGTACGCTCCCGATCGATCGAGGTGGCCTGATCCCTCCTTCACAGATCGAGATCCAACGAGGAGTGCGCCTCTCTCTTGGATGACGACGATGACGACGGCGACGACGCGGCAGAGGACTCCGCTCCAGCTGCACCAGCCGGCATGTGTGGAGGCAATTCCAGCGACCTCAATGGTGCAGGCCTTTGCCACCCGGGCATCCGTAGCGACAATGCATTGGCGTCGTGGCCGCTCGACGACTGGCCGCCGTCCGGATGTGGGTTATCGAGGTTGACTCCGAACAGCCGGACGCGCTTCGATGCCGCCGCTGGGTTGTTGACGTGCGGCACCGAGTCGACAACCATGGGCAGGCCGGCGGTGACTACGGGGCTCGGGTGGTGCACCGTAATGTGGAGTTGGTGAGGAGGCGGAGGTGGCGACGGCGGCGGTGGCAAGGGCGGGTGCTGATGAATCCCCGTCCCTGGGGAGCCGAAGAAGACGAGCTGCCTCGCCGGCACAGCGGGGTTGATGTTGCGGAAGTCGAAGCCCTGGCGAAAGCGGTGATGCTCGTAGAGCGTGGCGGGCGGCGCGGGCGGCATGAAGAAGCGCCCGCGCCGCCGCCCCACGGGCCGTAGGGCGAGGTCATGGGGAGCGGTAGGCGCTGGAAGCGGTGCGGGTCGCGGACGTCGGCGCGGCGCTTCCAGTCGATGAAGAGGCGGTCGCGGGTGGCCTCGGCGGCGCCGCGGCAGAAGGAGACGGTGTCCCCGGCGTCGAGGCGCTTCTCCTTGACGAAGCGGCTCCAACCCTTGGTCATGACGTAGCTCTGGCTGCTGTTCCAGTAGGAGTAGCGGAAGCGCCATAGCTTGCCGGTTCGGTCCTCGAAGCTGAGGAGAAGGCCCTTCTCGTTCGCCGCCGAGTCCAGCGGGAAGTACTTCTCGGCGTGCTGCTTCGGGATCACCAGCCGGTTCAGCTTCCCCACGTCGCTCGGCGTCACCACCTTGTCGAACATGTGCTCCTTCTCGATCACCTCCACGTCCTCGCCGCCACCGCCGCCGCCACTCCCCGACGCTCCCGCACCGTCGCTCGACCGGAAGGGAGAGCCCGACGCCGACGTGGACGCCGCCGCGGAAGCGGTGGCGGAAGGGGAGACCGATGTCGGGGAGGACGATGAGGCGGTGGCCGCCGCCGCCGCCGACGTCATGAAGGGGATCTCGCGGGGCGAGGCCTCCGCCTCCTCCTCCTCTTCATCCTGCTCCTGCTCCATCTCCTGTTCCCCTTCCTCCTCCTCCTCCTCTTCCTTGGAAAACCTACTACTCGTTGTAGCAAACTCCATATATATCTAGTAGATACTACTACCTCCCCCTAGCGGCGGCGCCCTCCGCTCCGCCTCTGCCTCCGGCGTCCACCTCGATCCCGTCCCCTTTTCCAGCGTGCCTCCGTCGCACGCGGCGTGGAGATGTGATGGCGATGCGGTCGTCCCGCCGGCGCGGCGCGCAGCGGGAGGGGGCCGGGAGAGCGAGCGAGCGAGCGAGAGAGAGATAGGAGGAGAGGAGACAGGGAGAGTCGGAGAGAGAGAGGAGGACGGGATCTATCTCCCAAGCCGTGGTATGGTACGAGCCTATCTATCTCATCTATCTATCTACCTACCTGCGCGCGCCGCGCCGCGCGCGTGTTTGCGTGTGTGCGCCCTCTCGCGTCGCGTATGCGAGAACGAATTTTGACCGGCTCGGAGACGACACGAGCGCGCCAGGCCCGGCCGGGGAGGAGGAGGCGATTTCATCTAATCTAGCCAATCCAGCGCCACAGCCAGAGAGGAGGGATGATGCGGGCTGCTGCTGCTGCTGCTGCGGCTCGCGCTGGCATTGACC
More
|
||||||||||
| CDS seq | ATGGAGTTTGCTACAACGAGTAGTAGGTTTTCCAAGGAAGAGGAGGAGGAGGAGGAAGGGGAACAGGAGATGGAGCAGGAGCAGGATGAAGAGGAGGAGGAGGCGGAGGCCTCGCCCCGCGAGATCCCCTTCATGACGTCGGCGGCGGCGGCGGCCACCGCCTCATCGTCCTCCCCGACATCGGTCTCCCCTTCCGCCACCGCTTCCGCGGCGGCGTCCACGTCGGCGTCGGGCTCTCCCTTCCGGTCGAGCGACGGTGCGGGAGCGTCGGGGAGTGGCGGCGGCGGTGGCGGCGAGGACGTGGAGGTGATCGAGAAGGAGCACATGTTCGACAAGGTGGTGACGCCGAGCGACGTGGGGAAGCTGAACCGGCTGGTGATCCCGAAGCAGCACGCCGAGAAGTACTTCCCGCTGGACTCGGCGGCGAACGAGAAGGGCCTTCTCCTCAGCTTCGAGGACCGAACCGGCAAGCTATGGCGCTTCCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTCATGACCAAGGGTTGGAGCCGCTTCGTCAAGGAGAAGCGCCTCGACGCCGGGGACACCGTCTCCTTCTGCCGCGGCGCCGCCGAGGCCACCCGCGACCGCCTCTTCATCGACTGGAAGCGCCGCGCCGACGTCCGCGACCCGCACCGCTTCCAGCGCCTACCGCTCCCCATGACCTCGCCCTACGGCCCGTGGGGCGGCGGCGCGGGCGCTTCTTCATGCCGCCCGCGCCGCCCGCCACGCTCTACGAGCATCACCGCTTTCGCCAGGGCTTCGACTTCCGCAACATCAACCCCGCTGTGCCGGCGAGGCAGCTCGTCTTCTTCGGCTCCCCAGGGACGGGGATTCATCAGCACCCGCCCTTGCCACCGCCGCCGTCGCCACCTCCGCCTCCTCACCAACTCCACATTACGGTGCACCACCCGAGCCCCGTAG
More
|
||||||||||
| Protein seq | MEFATTSSRFSKEEEEEEEGEQEMEQEQDEEEEEAEASPREIPFMTSAAAAATASSSSPTSVSPSATASAAASTSASGSPFRSSDGAGASGSGGGGGGEDVEVIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRGAAEATRDRLFIDWKRRADVRDPHRFQRLPLPMTSPYGPWGGGAGASSCRPRRPPRSTSITAFARASTSATSTPLCRRGSSSSSAPQGRGFISTRPCHRRRRHLRLLTNSTLRCTTRAP |
||||||||||
| Function | B3 domain-containing protein Os04g0581400 [UniProtKB/Swiss-Prot:Q7F9W2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g49230 | LOC_Os04g49230.1 | Chr04 | 29366456 | 29368515 | - | MSU_osa1r7 | ||
| CDS seq | ATGGAGTTTGCTACAACGAGTAGTAGGTTTTCCAAGGAAGAGGAGGAGGAGGAGGAAGGGGAACAGGAGATGGAGCAGGAGCAGGATGAAGAGGAGGAGGAGGCGGAGGCCTCGCCCCGCGAGATCCCCTTCATGACGTCGGCGGCGGCGGCGGCCACCGCCTCATCGTCCTCCCCGACATCGGTCTCCCCTTCCGCCACCGCTTCCGCGGCGGCGTCCACGTCGGCGTCGGGCTCTCCCTTCCGGTCGAGCGACGGTGCGGGAGCGTCGGGGAGTGGCGGCGGCGGTGGCGGCGAGGACGTGGAGGTGATCGAGAAGGAGCACATGTTCGACAAGGTGGTGACGCCGAGCGACGTGGGGAAGCTGAACCGGCTGGTGATCCCGAAGCAGCACGCCGAGAAGTACTTCCCGCTGGACTCGGCGGCGAACGAGAAGGGCCTTCTCCTCAGCTTCGAGGACCGAACCGGCAAGCTATGGCGCTTCCGCTACTCCTACTGGAACAGCAGCCAGAGCTACGTCATGACCAAGGGTTGGAGCCGCTTCGTCAAGGAGAAGCGCCTCGACGCCGGGGACACCGTCTCCTTCTGCCGCGGCGCCGCCGAGGCCACCCGCGACCGCCTCTTCATCGACTGGAAGCGCCGCGCCGACGTCCGCGACCCGCACCGCTTCCAGCGCCTACCGCTCCCCATGACCTCGCCCTACGGCCCGTGGGGCGGCGGCGCGGGCGCTTCTTCATGCCGCCCGCGCCGCCCGCCACGCTCTACGAGCATCACCGCTTTCGCCAGGGCTTCGACTTCCGCAACATCAACCCCGCTGTGCCGGCGAGGCAGCTCGTCTTCTTCGGCTCCCCAGGGACGGGGATTCATCAGCACCCGCCCTTGCCACCGCCGCCGTCGCCACCTCCGCCTCCTCACCAACTCCACATTACGGTGCACCACCCGAGCCCCGTAG
More
|
|||||||
| Protein seq | MEFATTSSRFSKEEEEEEEGEQEMEQEQDEEEEEAEASPREIPFMTSAAAAATASSSSPTSVSPSATASAAASTSASGSPFRSSDGAGASGSGGGGGGEDVEVIEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSAANEKGLLLSFEDRTGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKRLDAGDTVSFCRGAAEATRDRLFIDWKRRADVRDPHRFQRLPLPMTSPYGPWGGGAGASSCRPRRPPRSTSITAFARASTSATSTPLCRRGSSSSSAPQGRGFISTRPCHRRRRHLRLLTNSTLRCTTRAP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.203555 | 0.260735 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0581400 | RBH | 0.0 | 0.429079 | 2.198901 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g45850 | RBH | 0.0 | 0.129879 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0581400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024200 | RBH | 0.0 | 1.610210 | 0.435283 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0024940 | RBH | 0.0 | 2.544233 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0024640 | RBH | 0.350080 | 1.294823 | 1.456117 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024420 | RBH | 0.069094 | 0.288677 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0024570 | RBH | 0.718486 | 7.368987 | 2.168931 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0464000 | RBH | 2.1016625 | 13.7045715 | 4.983744 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023380 | RBH | 0.141149 | 0.147459 | 0.102448 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0466900 | RBH | 2.12925 | 10.048819 | 7.448368 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0023850 | RBH | 0.0 | 0.282279 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0023680 | RBH | 0.147574 | 9.776870 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0023810 | RBH | 1.124292 | 24.022074 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024200 | RBH | 0.126510 | 0.923954 | 0.316004 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0024410 | RBH | 0.222285 | 5.492382 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G023640 | RBH | 0.166753 | 0.0 | 0.343200 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0023570 | RBH | 0.394724 | 10.175952 | 0.075555 |
