Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g47760 | OGI:01039680 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:28331323-28333305 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCAGCTGATGCAAGAGAACATGCTCAAGCCATTGCTATTCAGGCTGAAGCTGACAAAGAGAAAGTGAAGATGGAAAAAATCAAGCAGTTCAATGAACTCTTAATGATTGACACCTCATCATACAGTGAGTCACAAAAAGCACGCCATGAAAAGATGCTAGACTTCTTATCTAATGAAATTTATGGTGTTGAGAAGTAGTGTAGGGAAGTATTTGTTGTATTGGCAATGCACCCATCTAATTATTGTAATGTACCAATCTAATTGGTATATTGTACCCATCTAATTGTTGTGATGAATGAGAATGCAGCCCAATGTTACCTTGAGTCAATCTTGTGTGCTATTGTGTAGTTTTTGAATCTCTAGCCTAAGGTTGTACACTTTATATTGGCCTAACACTTGAATCTGCAAAAAAAAAAAAAGAACATTGAATCAAATTAGTAAAGTTAGAGGCAAAATATTCTATAAGCAAACTAGCCGTTGTAAAACTAGCCGTTATAAAACTAGCCGTTGTGAAACTAGCCGTTGTGAAGCTTGTCTACAAAAGAAGGGTGCAGATCCCTTCCATCCACCAAATCTCCACATTCCCAACTTTCACTCTACTCCACCAGCTGCCCACATCCACTCTATACTACCAGATCGACAAAAATATCCACACAACCTAGCTCCCAACATGATAGTTCTGAGGTTAGCAACTTTGATGTTATCCCATTCGACTTGATTTGGGATTACATCAATGATCCAGTTGAGACTCAGATTGAAGAGGACATTAGTTATCAAATTAAGAAGCAACAGAGAGGTCCACCAACCCAGCAGAGAAAGTATATAAGAAGGGAGCGTCAAGATGCTGAGGATCGGTTGAAGGCTTACTACTTTTTAGAAAACCCAATGTACAACGATACCCAGTTTCGTTGGAGGTATAGGATGAAAAAGCATCTATTTCTACACATTGTGCAAACTCTTAGTCATTGGTCTCCGGTTTTTCAGCAAAGAAAGGATGCTTTTGGTAAAGTTGGATTTTCTCCTTTACTCAAATGCACTGCTGCTTTGCGAATGTTAGCATATGGAACATCTGCTGATATACTTGATGAAAATTTACAAATAGCTGAGACCACTGTCATTGAGAGCTTGGTTAATTTCTGCAAAGGTATTATTGATTGTTTTGGGCCAAAATACCTAAGGAGGCCCACTGCAGAAGACATCCAGAGGTTGCTTCATGTGGGAGAGGCTCGGGGCTTCCCCGGTATGTTGGGAAGTATCGACTGCATGCATTGGGAGTGGAAAAATTGCCCGGTGGCATGGAAGGGACAATATACCCGTGGGGATCATGGAGTGCCCACTGTCATGCTTGAAGCTGTTGCCTCACATGACTTGTGGATATGGCATGCATTTTTTGGTGTGGCTGGGTCCAACAATGATATCAATGTGTTGAACCAATCATCATTGTTCACAGCACAACGTCAAGGGATAGCACCGGATGTTCATTTTACAGTCAATGGCAATGAGTATGACATGGGTTACTACCTAGCTGATGGCATCTATCCTGAGTGGGCAGCATTTGTGAAAACATTCAAATTGCCTCAATATGAGAAGCACAAGTTATTTGCTCAAAAGCAAGAATCGACAAGAAAAGATATAGAGTGTGCATTTGGTGTTTTGCAATCTCGTTTTGCCATTATATGTACCCCAGCACGTATGTGGAAAAAACCAACTCTTGGTGAGATTATGTATGCTTGCATTATTTTGCATAACATGATTGTCGAGGATGAGAGGGATTCATATGAGGGCCGAGCTGACTTTAACTATGAGCAGGGAAGCTCTCCTGTACCACTGAATGGATATGGACAAGGGCCAATTCATGGATTTGATAGGGTGCTTGAAATAGGTGTGGCTATTCGGAATAAAGACATGCATCATCGACTAAAAAACGACTTGACTGAGCATATATGGAACAAATTTGGAGGCAACCAACCTGAGCACTAG
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| CDS seq | ATGGCAGCTGATGCAAGAGAACATGCTCAAGCCATTGCTATTCAGGCTGAAGCTGACAAAGAGAAAGTGAAGATGGAAAAAATCAAGCAGTTCAATGAACTCTTAATGATTGACACCTCATCATACATTGAGACTCAGATTGAAGAGGACATTAGTTATCAAATTAAGAAGCAACAGAGAGGTCCACCAACCCAGCAGAGAAAGTATATAAGAAGGGAGCGTCAAGATGCTGAGGATCGGTTGAAGGCTTACTACTTTTTAGAAAACCCAATGTACAACGATACCCAGTTTCGTTGGAGGTATAGGATGAAAAAGCATCTATTTCTACACATTGTGCAAACTCTTAGTCATTGGTCTCCGGTTTTTCAGCAAAGAAAGGATGCTTTTGGTAAAGTTGGATTTTCTCCTTTACTCAAATGCACTGCTGCTTTGCGAATGTTAGCATATGGAACATCTGCTGATATACTTGATGAAAATTTACAAATAGCTGAGACCACTGTCATTGAGAGCTTGGTTAATTTCTGCAAAGGTATTATTGATTGTTTTGGGCCAAAATACCTAAGGAGGCCCACTGCAGAAGACATCCAGAGGTTGCTTCATGTGGGAGAGGCTCGGGGCTTCCCCGGTATGTTGGGAAGTATCGACTGCATGCATTGGGAGTGGAAAAATTGCCCGGTGGCATGGAAGGGACAATATACCCGTGGGGATCATGGAGTGCCCACTGTCATGCTTGAAGCTGTTGCCTCACATGACTTGTGGATATGGCATGCATTTTTTGGTGTGGCTGGGTCCAACAATGATATCAATGTGTTGAACCAATCATCATTGTTCACAGCACAACGTCAAGGGATAGCACCGGATGTTCATTTTACAGTCAATGGCAATGAGTATGACATGGGTTACTACCTAGCTGATGGCATCTATCCTGAGTGGGCAGCATTTGTGAAAACATTCAAATTGCCTCAATATGAGAAGCACAAGTTATTTGCTCAAAAGCAAGAATCGACAAGAAAAGATATAGAGTGTGCATTTGGTGTTTTGCAATCTCGTTTTGCCATTATATGTACCCCAGCACGTATGTGGAAAAAACCAACTCTTGGTGAGATTATGTATGCTTGCATTATTTTGCATAACATGATTGTCGAGGATGAGAGGGATTCATATGAGGGCCGAGCTGACTTTAACTATGAGCAGGGAAGCTCTCCTGTACCACTGAATGGATATGGACAAGGGCCAATTCATGGATTTGATAGGGTGCTTGAAATAGGTGTGGCTATTCGGAATAAAGACATGCATCATCGACTAAAAAACGACTTGACTGAGCATATATGGAACAAATTTGGAGGCAACCAACCTGAGCACTAG
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| Protein seq | MAADAREHAQAIAIQAEADKEKVKMEKIKQFNELLMIDTSSYIETQIEEDISYQIKKQQRGPPTQQRKYIRRERQDAEDRLKAYYFLENPMYNDTQFRWRYRMKKHLFLHIVQTLSHWSPVFQQRKDAFGKVGFSPLLKCTAALRMLAYGTSADILDENLQIAETTVIESLVNFCKGIIDCFGPKYLRRPTAEDIQRLLHVGEARGFPGMLGSIDCMHWEWKNCPVAWKGQYTRGDHGVPTVMLEAVASHDLWIWHAFFGVAGSNNDINVLNQSSLFTAQRQGIAPDVHFTVNGNEYDMGYYLADGIYPEWAAFVKTFKLPQYEKHKLFAQKQESTRKDIECAFGVLQSRFAIICTPARMWKKPTLGEIMYACIILHNMIVEDERDSYEGRADFNYEQGSSPVPLNGYGQGPIHGFDRVLEIGVAIRNKDMHHRLKNDLTEHIWNKFGGNQPEH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g47760 | LOC_Os04g47760.1 | Chr04 | 28331323 | 28333305 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCAGCTGATGCAAGAGAACATGCTCAAGCCATTGCTATTCAGGCTGAAGCTGACAAAGAGAAAGTGAAGATGGAAAAAATCAAGCAGTTCAATGAACTCTTAATGATTGACACCTCATCATACATTGAGACTCAGATTGAAGAGGACATTAGTTATCAAATTAAGAAGCAACAGAGAGGTCCACCAACCCAGCAGAGAAAGTATATAAGAAGGGAGCGTCAAGATGCTGAGGATCGGTTGAAGGCTTACTACTTTTTAGAAAACCCAATGTACAACGATACCCAGTTTCGTTGGAGGTATAGGATGAAAAAGCATCTATTTCTACACATTGTGCAAACTCTTAGTCATTGGTCTCCGGTTTTTCAGCAAAGAAAGGATGCTTTTGGTAAAGTTGGATTTTCTCCTTTACTCAAATGCACTGCTGCTTTGCGAATGTTAGCATATGGAACATCTGCTGATATACTTGATGAAAATTTACAAATAGCTGAGACCACTGTCATTGAGAGCTTGGTTAATTTCTGCAAAGGTATTATTGATTGTTTTGGGCCAAAATACCTAAGGAGGCCCACTGCAGAAGACATCCAGAGGTTGCTTCATGTGGGAGAGGCTCGGGGCTTCCCCGGTATGTTGGGAAGTATCGACTGCATGCATTGGGAGTGGAAAAATTGCCCGGTGGCATGGAAGGGACAATATACCCGTGGGGATCATGGAGTGCCCACTGTCATGCTTGAAGCTGTTGCCTCACATGACTTGTGGATATGGCATGCATTTTTTGGTGTGGCTGGGTCCAACAATGATATCAATGTGTTGAACCAATCATCATTGTTCACAGCACAACGTCAAGGGATAGCACCGGATGTTCATTTTACAGTCAATGGCAATGAGTATGACATGGGTTACTACCTAGCTGATGGCATCTATCCTGAGTGGGCAGCATTTGTGAAAACATTCAAATTGCCTCAATATGAGAAGCACAAGTTATTTGCTCAAAAGCAAGAATCGACAAGAAAAGATATAGAGTGTGCATTTGGTGTTTTGCAATCTCGTTTTGCCATTATATGTACCCCAGCACGTATGTGGAAAAAACCAACTCTTGGTGAGATTATGTATGCTTGCATTATTTTGCATAACATGATTGTCGAGGATGAGAGGGATTCATATGAGGGCCGAGCTGACTTTAACTATGAGCAGGGAAGCTCTCCTGTACCACTGAATGGATATGGACAAGGGCCAATTCATGGATTTGATAGGGTGCTTGAAATAGGTGTGGCTATTCGGAATAAAGACATGCATCATCGACTAAAAAACGACTTGACTGAGCATATATGGAACAAATTTGGAGGCAACCAACCTGAGCACTAG
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| Protein seq | MAADAREHAQAIAIQAEADKEKVKMEKIKQFNELLMIDTSSYIETQIEEDISYQIKKQQRGPPTQQRKYIRRERQDAEDRLKAYYFLENPMYNDTQFRWRYRMKKHLFLHIVQTLSHWSPVFQQRKDAFGKVGFSPLLKCTAALRMLAYGTSADILDENLQIAETTVIESLVNFCKGIIDCFGPKYLRRPTAEDIQRLLHVGEARGFPGMLGSIDCMHWEWKNCPVAWKGQYTRGDHGVPTVMLEAVASHDLWIWHAFFGVAGSNNDINVLNQSSLFTAQRQGIAPDVHFTVNGNEYDMGYYLADGIYPEWAAFVKTFKLPQYEKHKLFAQKQESTRKDIECAFGVLQSRFAIICTPARMWKKPTLGEIMYACIILHNMIVEDERDSYEGRADFNYEQGSSPVPLNGYGQGPIHGFDRVLEIGVAIRNKDMHHRLKNDLTEHIWNKFGGNQPEH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g45400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0445700 | RBH | 0.062582 | 0.07329 | 0.5592955 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0022320 | RBH | 0.0 | 0.0 | 0.199999 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0449600 | SBH | 0.0870895 | 0.0147175 | 0.111884 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022830 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0022660 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0022780 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0023170 | SBH | 0.211868 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0022480 | SBH | 0.0 | 0.0 | 0.0 |
