Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g47720 | OGI:04083180 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:28315067-28316878 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCAGCAAATCATCATCCAGCCAATTCAGGCATTTTACTTGCTCTCCCACTCGGACGACGCCGACAATGGCAGCGAAGGGAAACCCAGCGGATGCGGTCGCCATCGTGGCCGTGCCGTTCCCGGCGCAGGGCCACCTCAACCAGCTCCTGCACCTGTCGCTGCAGCTCGCGTCGTCGTCGCACGGGCTCACGGTGCACTACGCTGCGCCGGCGCCGCAGCTCCGCCAGGCGCGGGCGCGCGTGCACGGCTGGGACGACAAGGCCCTCCTCTCCGTCCAGTTCCACGACCTCGGCGTCTCCACGTACGTCTCTCCGCCACCCGATCCCACCGCCGACGCGCCCTTCCCCTCCCACCTCATGCCCCTCTGGGAGGCGTACACCGCGGACGCGCGCGCCCCGCTCTCGGCGCTCCTTGGCGAGCTGTCCGCGTCCTACCGCCGGGTCGTCGTCATCTGCGACATCATGAACTCCTTCGCCGTCAAGGAGGCGGCGCGGCTGCCCAACGGCGAGGCATTCGTGTGTAACTGCGTAGCCGTGTCGTCCGCCACCGGGAGCATCGACCCCGGGCACCGGCTCCTGCGCGAGAACGGCCTCCGCTTCATTCCCATGGATACCTACTTGACCAAGGAGTTCATGGACTACGAGCAACAGCGAGCAAGAGCGGCGCAGTCGATCTCGTCCTGCGCCGGCATCCTCGCGAACGCGTGCCGCGCGCTCGAGGGTGAATTCATCGACGTTTTCGCCGAGAGATTGGATGCCAGCAGCAAGAAGCTCTTCGCGATCGGGCCGTTAAACCCACTGCTCGACACGGGCGCATTGAAGCAGGGCCGGCGGCGACACGAGTGCCTTGACTGGCTCGACAGGCAGCCACCGGAATCCGTGCTCTACGTGTCGTTCGGCACGACGTCCTCTCTTCGGGTGGAGCAGGTCGCGGAGCTCGCCGCGGCACTGCGCGGCAGCAAGCAGCGGTTCATCTGGGTGCTGCGCGACGCCGACCGCGGCAACATATTCGCGGGCTCCGGCGAGAGCGAGAGCCGGTACGCCAAGCTTCTGTCCGAGTTCTGCAAGGAAACCGAAGGCACGGGCCTGGTGATCACCGGGTGGGCGCCGCAGCTGGAGATCCTGGCGCACGGCGCCACGGCGGCGTTCATGAGCCACTGCGGCTGGAACTCCACCATGGAGAGCCTGAGCCACGGGAAGCCGATTCTGGCGTGGCCCATGCACTCGGACCAGCCGTGGGACGCGGAGCTGGTGTGCAACTACCTCAAGGCCGGATTCTTGGTAAGGCCATGGGAGAAGCACGGTGAGGTGGTGCCGGCGACAACCATACAAGCGGTGATCGAAAAGATGATGGCATCTGAAGAAGGGTTGGCGGTGCGGCAGCGCGCGAAGGCCCTCGGCCATGCCGTCCGTTCATCGCGCAATGATCTTGAGGACTTCGTTGATCATATCACAAGATGATCGAAGAACGCCATGTTCCGAAAGGTAAAAATTAATCATATACCCTCATTTTTCAATCTAAATGTGGAGGGTATATGATTCAATCTCCTGTTAAACTTTCTTTGGCTTAATAAAATTCGACCGCACCGCTCACGCCGGACCTTAAATAAAAGGGCTTCAAACTTTGTGTGTGAGGCTTTGTTTAGTTGCTTACAAAGTTGGAAATTTAGTTTGAAATTGGTACGATGTGACTGAAGAGTTGTGTGTGTATAACAGATTGATATGATGGAAAAAGTTCGAAGTTTGGATCTAAACAGAGCCTGAGTAATAGTTTTGTTTTGAATGCGACTATTTGAATTACATGATTTAAGT
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| CDS seq | ATGGCAGCGAAGGGAAACCCAGCGGATGCGGTCGCCATCGTGGCCGTGCCGTTCCCGGCGCAGGGCCACCTCAACCAGCTCCTGCACCTGTCGCTGCAGCTCGCGTCGTCGTCGCACGGGCTCACGGTGCACTACGCTGCGCCGGCGCCGCAGCTCCGCCAGGCGCGGGCGCGCGTGCACGGCTGGGACGACAAGGCCCTCCTCTCCGTCCAGTTCCACGACCTCGGCGTCTCCACGTACGTCTCTCCGCCACCCGATCCCACCGCCGACGCGCCCTTCCCCTCCCACCTCATGCCCCTCTGGGAGGCGTACACCGCGGACGCGCGCGCCCCGCTCTCGGCGCTCCTTGGCGAGCTGTCCGCGTCCTACCGCCGGGTCGTCGTCATCTGCGACATCATGAACTCCTTCGCCGTCAAGGAGGCGGCGCGGCTGCCCAACGGCGAGGCATTCGTGTGTAACTGCGTAGCCGTGTCGTCCGCCACCGGGAGCATCGACCCCGGGCACCGGCTCCTGCGCGAGAACGGCCTCCGCTTCATTCCCATGGATACCTACTTGACCAAGGAGTTCATGGACTACGAGCAACAGCGAGCAAGAGCGGCGCAGTCGATCTCGTCCTGCGCCGGCATCCTCGCGAACGCGTGCCGCGCGCTCGAGGGTGAATTCATCGACGTTTTCGCCGAGAGATTGGATGCCAGCAGCAAGAAGCTCTTCGCGATCGGGCCGTTAAACCCACTGCTCGACACGGGCGCATTGAAGCAGGGCCGGCGGCGACACGAGTGCCTTGACTGGCTCGACAGGCAGCCACCGGAATCCGTGCTCTACGTGTCGTTCGGCACGACGTCCTCTCTTCGGGTGGAGCAGGTCGCGGAGCTCGCCGCGGCACTGCGCGGCAGCAAGCAGCGGTTCATCTGGGTGCTGCGCGACGCCGACCGCGGCAACATATTCGCGGGCTCCGGCGAGAGCGAGAGCCGGTACGCCAAGCTTCTGTCCGAGTTCTGCAAGGAAACCGAAGGCACGGGCCTGGTGATCACCGGGTGGGCGCCGCAGCTGGAGATCCTGGCGCACGGCGCCACGGCGGCGTTCATGAGCCACTGCGGCTGGAACTCCACCATGGAGAGCCTGAGCCACGGGAAGCCGATTCTGGCGTGGCCCATGCACTCGGACCAGCCGTGGGACGCGGAGCTGGTGTGCAACTACCTCAAGGCCGGATTCTTGGTAAGGCCATGGGAGAAGCACGGTGAGGTGGTGCCGGCGACAACCATACAAGCGGTGATCGAAAAGATGATGGCATCTGAAGAAGGGTTGGCGGTGCGGCAGCGCGCGAAGGCCCTCGGCCATGCCGTCCGTTCATCGCGCAATGATCTTGAGGACTTCGTTGATCATATCACAAGATGA
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| Protein seq | MAAKGNPADAVAIVAVPFPAQGHLNQLLHLSLQLASSSHGLTVHYAAPAPQLRQARARVHGWDDKALLSVQFHDLGVSTYVSPPPDPTADAPFPSHLMPLWEAYTADARAPLSALLGELSASYRRVVVICDIMNSFAVKEAARLPNGEAFVCNCVAVSSATGSIDPGHRLLRENGLRFIPMDTYLTKEFMDYEQQRARAAQSISSCAGILANACRALEGEFIDVFAERLDASSKKLFAIGPLNPLLDTGALKQGRRRHECLDWLDRQPPESVLYVSFGTTSSLRVEQVAELAAALRGSKQRFIWVLRDADRGNIFAGSGESESRYAKLLSEFCKETEGTGLVITGWAPQLEILAHGATAAFMSHCGWNSTMESLSHGKPILAWPMHSDQPWDAELVCNYLKAGFLVRPWEKHGEVVPATTIQAVIEKMMASEEGLAVRQRAKALGHAVRSSRNDLEDFVDHITR |
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| Function | Putative cis-zeatin O-glucosyltransferase [UniProtKB/Swiss-Prot:Q6JAH0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g47720 | LOC_Os04g47720.1 | Chr04 | 28315067 | 28316878 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCAGCGAAGGGAAACCCAGCGGATGCGGTCGCCATCGTGGCCGTGCCGTTCCCGGCGCAGGGCCACCTCAACCAGCTCCTGCACCTGTCGCTGCAGCTCGCGTCGTCGTCGCACGGGCTCACGGTGCACTACGCTGCGCCGGCGCCGCAGCTCCGCCAGGCGCGGGCGCGCGTGCACGGCTGGGACGACAAGGCCCTCCTCTCCGTCCAGTTCCACGACCTCGGCGTCTCCACGTACGTCTCTCCGCCACCCGATCCCACCGCCGACGCGCCCTTCCCCTCCCACCTCATGCCCCTCTGGGAGGCGTACACCGCGGACGCGCGCGCCCCGCTCTCGGCGCTCCTTGGCGAGCTGTCCGCGTCCTACCGCCGGGTCGTCGTCATCTGCGACATCATGAACTCCTTCGCCGTCAAGGAGGCGGCGCGGCTGCCCAACGGCGAGGCATTCGTGTGTAACTGCGTAGCCGTGTCGTCCGCCACCGGGAGCATCGACCCCGGGCACCGGCTCCTGCGCGAGAACGGCCTCCGCTTCATTCCCATGGATACCTACTTGACCAAGGAGTTCATGGACTACGAGCAACAGCGAGCAAGAGCGGCGCAGTCGATCTCGTCCTGCGCCGGCATCCTCGCGAACGCGTGCCGCGCGCTCGAGGGTGAATTCATCGACGTTTTCGCCGAGAGATTGGATGCCAGCAGCAAGAAGCTCTTCGCGATCGGGCCGTTAAACCCACTGCTCGACACGGGCGCATTGAAGCAGGGCCGGCGGCGACACGAGTGCCTTGACTGGCTCGACAGGCAGCCACCGGAATCCGTGCTCTACGTGTCGTTCGGCACGACGTCCTCTCTTCGGGTGGAGCAGGTCGCGGAGCTCGCCGCGGCACTGCGCGGCAGCAAGCAGCGGTTCATCTGGGTGCTGCGCGACGCCGACCGCGGCAACATATTCGCGGGCTCCGGCGAGAGCGAGAGCCGGTACGCCAAGCTTCTGTCCGAGTTCTGCAAGGAAACCGAAGGCACGGGCCTGGTGATCACCGGGTGGGCGCCGCAGCTGGAGATCCTGGCGCACGGCGCCACGGCGGCGTTCATGAGCCACTGCGGCTGGAACTCCACCATGGAGAGCCTGAGCCACGGGAAGCCGATTCTGGCGTGGCCCATGCACTCGGACCAGCCGTGGGACGCGGAGCTGGTGTGCAACTACCTCAAGGCCGGATTCTTGGTAAGGCCATGGGAGAAGCACGGTGAGGTGGTGCCGGCGACAACCATACAAGCGGTGATCGAAAAGATGATGGCATCTGAAGAAGGGTTGGCGGTGCGGCAGCGCGCGAAGGCCCTCGGCCATGCCGTCCGTTCATCGCGCAATGATCTTGAGGACTTCGTTGATCATATCACAAGATGA
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| Protein seq | MAAKGNPADAVAIVAVPFPAQGHLNQLLHLSLQLASSSHGLTVHYAAPAPQLRQARARVHGWDDKALLSVQFHDLGVSTYVSPPPDPTADAPFPSHLMPLWEAYTADARAPLSALLGELSASYRRVVVICDIMNSFAVKEAARLPNGEAFVCNCVAVSSATGSIDPGHRLLRENGLRFIPMDTYLTKEFMDYEQQRARAAQSISSCAGILANACRALEGEFIDVFAERLDASSKKLFAIGPLNPLLDTGALKQGRRRHECLDWLDRQPPESVLYVSFGTTSSLRVEQVAELAAALRGSKQRFIWVLRDADRGNIFAGSGESESRYAKLLSEFCKETEGTGLVITGWAPQLEILAHGATAAFMSHCGWNSTMESLSHGKPILAWPMHSDQPWDAELVCNYLKAGFLVRPWEKHGEVVPATTIQAVIEKMMASEEGLAVRQRAKALGHAVRSSRNDLEDFVDHITR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.438456 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0565200 | RBH | 0.0 | 0.0 | 1.623611 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g42280 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0565200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0022570 | RBH | 0.220584 | 0.522993 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0023900 | SBH | 0.0 | 0.0 | 2.464998 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0023620 | SBH | 0.000000 | 1.525985 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0023380 | SBH | 0.0 | 0.040374 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0023490 | RBH | 0.0 | 0.0 | 0.868785 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0445400 | RBH | 0.1682895 | 0.073765 | 1.6750445 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0021760 | RBH | 0.262131 | 0.114318 | 0.025950 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0449300 | RBH | 0.473878 | 0.0635935 | 0.1396045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022250 | SBH | 0.725561 | 0.026853 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0022080 | RBH | 0.893895 | 0.647343 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0022190 | SBH | 0.925935 | 7.292955 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0022590 | RBH | 1.209510 | 0.091100 | 0.045423 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0022790 | SBH | 0.753626 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G022580 | RBH | 0.0 | 0.0 | 0.274242 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0021920 | SBH | 0.584142 | 0.000000 | 0.0 |
