Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g47580 | OGI:04084150 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:28218714-28221677 | ||||||||
| Gene Symbol | CYCB2;1, cycB2;1 (=cycOs1), cycB2;1, cycOs1, CycB2;1, CycOs1, CYCB2-1, CYCOS1, CycB2-Os1, CYCB2, CycB2;os;1, Orysa;CycB2;1, OsCycB2;1 | ||||||||||
| DNA seq | TGAACGCACCAATTGGAATTTTCATTTTTTTTTAAGAGGAATCTGAAAGTCTCAACATGCAAGTTATTTTCTTCATGCTACTTGAACACATGTAGATTTACAAGAGATTCAGCTTACATAGGCTGAATGCCTGAATCATTTATTAGCCCCCCAGTATAACTGAAGGACTGACCACCACCCAGATTATCCATCATTCACACCAAGTTTACATTACCACAAAAGAGCTGTAGTAAGGTAAATCTGCTGCACTTTTGTGAAGCATCAACATGCTTGCTGTAGTTGTTCTGAAGCTAAGTTAAAAAAATCTATCCAGGGGAATAGATTCATTCAACAAGGCTGCTTCTGAAGGTTGTAACCTCCTGCTCCTGACTCAAGCAAGAAGAGAGCAGGCTCCGTTTTGGCTGCACACCCAAACTTGAACGTACTGTATTTCCGGTGCACGCCGGTGAGCTTGCCTGCTCCCGCCTTCTGGTGGAAATCTACCATCATCCTAGAACACTCACTGAAAAGGAGAACAAGAGAAAGAAATATGATCAGCTCAAGTATGATCACCATACATCTGAAGACATAAATGCTTGTAAACGCAGGCAGGGAATGCGAAGGCGAAGTGCTACTTACAGAAGCTGCTCTCCGGTATATCTACTATGTAGTTCGCAGGTCTTTGTCCACTGCTGGCAACGAGTGAGAGCACATTGTGCTGTGTAAACTGCAGCAGCAGCAAGAAGCGAAGGTCGGTACTTGAGCATTTGGTATTCCACCAGGGAGAGCTCCAGAATGAAAAAGGAAAGTAGCTGTAGCTGTGATTGACAACATGCATTATATTGGCTGTTGGGAGCTTTGTTATTCAAGTGATGAAAAACACTGATTTTGTAATGTTAGGATAAATCACCTGCTTGTCAGACTGAGCTGCCTTCAGAAACCGTCTCATAAAAACGTAAGGTGTTGGTACAGACATGTTGAACTGGAGTGTGTTTAGGATCAACTTTTCCTACTCAATGAGGAGATTTACTTGTTTAGTACGACTGCCAACAGGCCATGGCACTCTAAAATAAAAGAGGACAATATGCAAGCACACACAAATATGAAGAGATAATAAAAAAGGATGTAAACAGAGATATTAATTTGGATGTCATAGAAGCATTGGTCTATTTGGATATCTAAGGATTTGTAGCATTGGTCATGAAGTCAATGTAAGTGCATACTGTATTGAACGAAATACCATTTCCAGAATTTGTCCTTTTGTATAAGCCCGGTCAGAAATTAGCACTAGATCCTCGACGACAGGGACTGCGACTTCCTCATATTTGCAAGCAAGGAGCATAGCTGTCACTCCAACTAGCTGCAACTTCTTCCTTGGCACAACTTGTTTTTCCAAGAATCTGTCTACTATGTTAACAGTAAGAAAGAGAGTCTCATCCATCAGCTCAAACTTGTGATGGACCTGGCAAGACACCAAATAAGATATCAAATTCAAAGATTGAATCTACTAAAAGATAAGAATGGTTCTGGGTCTGCATATGCTTCTCTACCTCAATGAGCCAATCAATCAGAATTGCTCTCATCTTTTCATTTATGTCTCCTTGACTGGACATGTAATCAGGCTGCACACAACTCATTTCCTGCGTAAAGCCCCATGTTTGCAATGTAGTTAAGACTGTTGCCTGAAGTATCAGTCTAATTTGAGGATGTCAATCTAACTTATTTATTTTCTATGGAATGACAAATTTTGCTTATACAAACATATTCACGTATTACACAATCTATAGCAATCAATTCAAGATTACGCAAACAAAACGATAAAAAGAAGGTATGCAATGTCTGACACTGAAATGACAAGAGATTACCTCATTTTCTCTATAGAACTTGTACAACTCTTCGACGTACTCGGTTGCTGCAAGCGGATTCCCTGAGTCGGCACTGTCAATGTCCATCATGGACTCATCCTCATCAGTATCATTGCATTCATCCTACAAGTGCCAAATGTAACAGTAAGAGAGACCATCGGTTTTACACAGCAAGTCAACTGATCATCACACAGTATGCATACCACGGCAATATAGTCGTTCGATTCGCACGATTCCACATCGTCGTCAACTGTGCCATCGGGGATGGGGTTCTTCTGTGGATCAGTGCAGACGACCGCTGCATCAGCCACGGAAACCTGATGGTCAAGCTGTTCTTTTCGCGTCAAGGAGGCCGCGAAATTCCTGGATCACTCAGAGCGAGCGTACCATCATCAGATCAAGGCTGCAAGAAACACATCAGAGCGGGCAGCAATGGCGCACACGTCCTAACCTCGTCATAGGCCGGTGGCTCACCACCAATGCAGGCTTCTGCTCTTCCTTCCCACTCTTCCTGACAAAAGCGAAAAAACAGACCACAAAGGATTGGGATCTCGATCCAAGAAGCAGCGAAGAAAAAGACACGATCTTTTTTATCTTTTTTCACGAGATCTCCGAGATTCTCGGCGCGGGGGGAGACGGTGGTTTACTCTAGCATCGGCTTCTTGGCGATCGCGGACGGGTGCGGCGGCGCCCCGACGAGGTTGTTGATGTCCCTGAGCGGCCTCCGGTTCCCCATCTCTGCACCAACCCAGGGAGCAAGAATCAGCAGATCAGCAATCGGGGACAAAATCCAAACCAAGAACAACCCGCGCCGCCGGCCGCCGACCCACCTCCGATCCCCGGCACGGGCTTCCCCACCGCCGCCAGCCTCCGGTTCTCGCTCGCCCTATCCATCGCAGGTAAGCACGATCCACACGATCTACAGGCGGAGGAGAGCCGAGACGCCCATGGCGATGGCCTGCGTGGGATCCAAACGAACGAAGTAAACACCACCACAGCGGCGGCGTCTAATAAAAGCGACGAGGCGTACACCACCAGCAACGTCTCCCTCTCTGACTGCGTTGGGATTCGAAGAGGGAGAGAGAAATTGGGGGAAATTTGACTAAATATCGTAACCTGT
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| CDS seq | ATGGATAGGGCGAGCGAGAACCGGAGGCTGGCGGCGGTGGGGAAGCCCGTGCCGGGGATCGGAGAGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTCGGGGCGCCGCCGCACCCGTCCGCGATCGCCAAGAAGCCGATGCTAGAGAAGAGTGGGAAGGAAGAGCAGAAGCCTGCATTGGTGGTGAGCCACCGGCCTATGACGAGGAATTTCGCGGCCTCCTTGACGCGAAAAGAACAGCTTGACCATCAGGTTTCCGTGGCTGATGCAGCGGTCGTCTGCACTGATCCACAGAAGAACCCCATCCCCGATGGCACAGTTGACGACGATGTGGAATCGTGCGAATCGAACGACTATATTGCCGTGGATGAATGCAATGATACTGATGAGGATGAGTCCATGATGGACATTGACAGTGCCGACTCAGGGAATCCGCTTGCAGCAACCGAGTACGTCGAAGAGTTGTACAAGTTCTATAGAGAAAATGAGGAAATGAGTTGTGTGCAGCCTGATTACATGTCCAGTCAAGGAGACATAAATGAAAAGATGAGAGCAATTCTGATTGATTGGCTCATTGAGGTCCATCACAAGTTTGAGCTGATGGATGAGACTCTCTTTCTTACTGTTAACATAGTAGACAGATTCTTGGAAAAACAAGTTGTGCCAAGGAAGAAGTTGCAGCTAGTTGGAGTGACAGCTATGCTCCTTGCTTGCAAATATGAGGAAGTCGCAGTCCCTGTCGTCGAGGATCTAGTGCTAATTTCTGACCGGGCTTATACAAAAGGACAAATTCTGGAAATGGAAAAGTTGATCCTAAACACACTCCAGTTCAACATGTCTGTACCAACACCTTACGTTTTTATGAGACGGTTTCTGAAGGCAGCTCAGTCTGACAAGCAGCTACAGCTACTTTCCTTTTTCATTCTGGAGCTCTCCCTGGTGGAATACCAAATGCTCAAGTACCGACCTTCGCTTCTTGCTGCTGCTGCAGTTTACACAGCACAATGTGCTCTCACTCGTTGCCAGCAGTGGACAAAGACCTGCGAACTACATAGTAGATATACCGGAGAGCAGCTTCTTGAGTGTTCTAGGATGATGGTAGATTTCCACCAGAAGGCGGGAGCAGGCAAGCTCACCGGCGTGCACCGGAAATACAGTACGTTCAAGTTTGGGTGTGCAGCCAAAACGGAGCCTGCTCTCTTCTTGCTTGAGTCAGGAGCAGGAGGTTACAACCTTCAGAAGCAGCCTTGTTGA
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| Protein seq | MDRASENRRLAAVGKPVPGIGEMGNRRPLRDINNLVGAPPHPSAIAKKPMLEKSGKEEQKPALVVSHRPMTRNFAASLTRKEQLDHQVSVADAAVVCTDPQKNPIPDGTVDDDVESCESNDYIAVDECNDTDEDESMMDIDSADSGNPLAATEYVEELYKFYRENEEMSCVQPDYMSSQGDINEKMRAILIDWLIEVHHKFELMDETLFLTVNIVDRFLEKQVVPRKKLQLVGVTAMLLACKYEEVAVPVVEDLVLISDRAYTKGQILEMEKLILNTLQFNMSVPTPYVFMRRFLKAAQSDKQLQLLSFFILELSLVEYQMLKYRPSLLAAAAVYTAQCALTRCQQWTKTCELHSRYTGEQLLECSRMMVDFHQKAGAGKLTGVHRKYSTFKFGCAAKTEPALFLLESGAGGYNLQKQPC |
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| Function | Cyclin-B2-1 [UniProtKB/Swiss-Prot:Q7XSJ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g47580 | LOC_Os04g47580.1 | Chr04 | 28218714 | 28221677 | - | MSU_osa1r7 | ||
| CDS seq | ATGGATAGGGCGAGCGAGAACCGGAGGCTGGCGGCGGTGGGGAAGCCCGTGCCGGGGATCGGAGAGATGGGGAACCGGAGGCCGCTCAGGGACATCAACAACCTCGTCGGGGCGCCGCCGCACCCGTCCGCGATCGCCAAGAAGCCGATGCTAGAGAAGAGTGGGAAGGAAGAGCAGAAGCCTGCATTGGTGGTGAGCCACCGGCCTATGACGAGGAATTTCGCGGCCTCCTTGACGCGAAAAGAACAGCTTGACCATCAGGTTTCCGTGGCTGATGCAGCGGTCGTCTGCACTGATCCACAGAAGAACCCCATCCCCGATGGCACAGTTGACGACGATGTGGAATCGTGCGAATCGAACGACTATATTGCCGTGGATGAATGCAATGATACTGATGAGGATGAGTCCATGATGGACATTGACAGTGCCGACTCAGGGAATCCGCTTGCAGCAACCGAGTACGTCGAAGAGTTGTACAAGTTCTATAGAGAAAATGAGGAAATGAGTTGTGTGCAGCCTGATTACATGTCCAGTCAAGGAGACATAAATGAAAAGATGAGAGCAATTCTGATTGATTGGCTCATTGAGGTCCATCACAAGTTTGAGCTGATGGATGAGACTCTCTTTCTTACTGTTAACATAGTAGACAGATTCTTGGAAAAACAAGTTGTGCCAAGGAAGAAGTTGCAGCTAGTTGGAGTGACAGCTATGCTCCTTGCTTGCAAATATGAGGAAGTCGCAGTCCCTGTCGTCGAGGATCTAGTGCTAATTTCTGACCGGGCTTATACAAAAGGACAAATTCTGGAAATGGAAAAGTTGATCCTAAACACACTCCAGTTCAACATGTCTGTACCAACACCTTACGTTTTTATGAGACGGTTTCTGAAGGCAGCTCAGTCTGACAAGCAGCTACAGCTACTTTCCTTTTTCATTCTGGAGCTCTCCCTGGTGGAATACCAAATGCTCAAGTACCGACCTTCGCTTCTTGCTGCTGCTGCAGTTTACACAGCACAATGTGCTCTCACTCGTTGCCAGCAGTGGACAAAGACCTGCGAACTACATAGTAGATATACCGGAGAGCAGCTTCTTGAGTGTTCTAGGATGATGGTAGATTTCCACCAGAAGGCGGGAGCAGGCAAGCTCACCGGCGTGCACCGGAAATACAGTACGTTCAAGTTTGGGTGTGCAGCCAAAACGGAGCCTGCTCTCTTCTTGCTTGAGTCAGGAGCAGGAGGTTACAACCTTCAGAAGCAGCCTTGTTGA
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| Protein seq | MDRASENRRLAAVGKPVPGIGEMGNRRPLRDINNLVGAPPHPSAIAKKPMLEKSGKEEQKPALVVSHRPMTRNFAASLTRKEQLDHQVSVADAAVVCTDPQKNPIPDGTVDDDVESCESNDYIAVDECNDTDEDESMMDIDSADSGNPLAATEYVEELYKFYRENEEMSCVQPDYMSSQGDINEKMRAILIDWLIEVHHKFELMDETLFLTVNIVDRFLEKQVVPRKKLQLVGVTAMLLACKYEEVAVPVVEDLVLISDRAYTKGQILEMEKLILNTLQFNMSVPTPYVFMRRFLKAAQSDKQLQLLSFFILELSLVEYQMLKYRPSLLAAAAVYTAQCALTRCQQWTKTCELHSRYTGEQLLECSRMMVDFHQKAGAGKLTGVHRKYSTFKFGCAAKTEPALFLLESGAGGYNLQKQPC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.380633 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0563700 | RBH | 0.0 | 0.0 | 1.648389 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g41720 | SBH | 0.000000 | 0.000000 | 0.236823 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0563700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0023060 | RBH | 0.0 | 9.252322 | 1.383587 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0023790 | RBH | 0.0 | 2.689605 | 0.282716 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0023510 | RBH | 0.0 | 4.772547 | 3.748063 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0023270 | RBH | 0.0 | 0.313124 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0023380 | RBH | 0.0 | 15.711598 | 5.791600 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0443800 | RBH | 6.445704 | 3.2959885 | 5.2332225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0022220 | RBH | 0.0 | 0.936663 | 0.314901 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0447700 | RBH | 5.491681 | 0.0708615 | 18.675906 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022720 | RBH | 0.0 | 0.166565 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0022540 | RBH | 0.0 | 18.384398 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0022660 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0023040 | RBH | 0.121024 | 0.786322 | 1.050467 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0023250 | RBH | 0.0 | 4.646850 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G022470 | RBH | 0.0 | 7.336303 | 1.842313 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0022380 | RBH | 0.0 | 2.025886 | 4.540973 |
