Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g46440 | OGI:04082310 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:27539878-27540929 | ||||||||
| Gene Symbol | ERF34, OsERF#034, OsERF034, OsERF34, AP2/EREBP#042, AP2/EREBP42 | ||||||||||
| DNA seq | AAGCCTCCAACTACTCCAGTCCACACCCGCACCACCGCGGCAGCCATGGACGACTCCCACGACCTGGCCTCCCCGACCTCCCCTGACACGGCGTCCTCGTCGTCTTCGTCTACGTCGACATCATCGTCCTCCGCCACCGTCGCCCCGAAGAAGCGGCCGCGCAACGACGGCCGGCACCCGACGTACCGCGGCGTGCGCATGCGGAGCTGGGGGAAGTGGGTGTCCGAGATCAGGGAGCCCCGCAAGAAGTCGCGCATCTGGCTGGGCACGTTCGCCACCGCGGAGATGGCCGCGCGCGCGCACGACGTGGCCGCGCTCGCCATCAAGGGCCGCACCGCGCACCTCAACTTCCCGGACCTCGCGCACCTGCTCCCGCGCCCGGCCACCGCGGCGCCCAAGGACGTGCAGGCGGCGGCGCTGCTCGCCGCCGCCGCAGCCGACTTCCCCTCCGTCTCCGTCGACGCCAATGCCAAGAGCCCCGACACCTGCTCCGTCGCCAGCGCCGCCTCGCCGCAGCCGCCACCGCCGGACGCCGAAGCGGACCCTGACAGCACGCTGTTCGACCTCCCGGACCTGCTCCTGGACCTGAGATACGAGACGTCCTCGAGCCTCTCGTGCGGGGCGTCGTGGGCCGTCGATGACGACGTGGCCGGCGGCGTCGTGTTCCGCCTCGAGGAGCCCATGCTGTGGGATTACTGATCAATGTGGCTGCTCATGGGAGCCAGTCATGCTTCCGTGTATTAGATCGATCAGTGGCTTGTACATGGCGGTGCTTCTTTTCTTCTTCTTTACTCTGCTTCTGCTCTGTTCTCTTTCTTCTTTTCTCCCTTTGTATTTTGTTTTTTTTCCTTCCATTTTTTCTTCTTTTCTTTGCCAAATCTAGCATGCGAGGTTGTATAAAGTCAGTTCCTTTTCCTCGCCTTGCTTGATTTGGGGGACAAGAATATGTATAATTAACAAGCATCTTATCTTCGACTATCCCTTTTCTAGCTTGTTTTGTTTAGTGGTAAAAAGTGATCCAGCAAGATTTGGGCCAAATGGACAGTGTGATA
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| CDS seq | ATGGACGACTCCCACGACCTGGCCTCCCCGACCTCCCCTGACACGGCGTCCTCGTCGTCTTCGTCTACGTCGACATCATCGTCCTCCGCCACCGTCGCCCCGAAGAAGCGGCCGCGCAACGACGGCCGGCACCCGACGTACCGCGGCGTGCGCATGCGGAGCTGGGGGAAGTGGGTGTCCGAGATCAGGGAGCCCCGCAAGAAGTCGCGCATCTGGCTGGGCACGTTCGCCACCGCGGAGATGGCCGCGCGCGCGCACGACGTGGCCGCGCTCGCCATCAAGGGCCGCACCGCGCACCTCAACTTCCCGGACCTCGCGCACCTGCTCCCGCGCCCGGCCACCGCGGCGCCCAAGGACGTGCAGGCGGCGGCGCTGCTCGCCGCCGCCGCAGCCGACTTCCCCTCCGTCTCCGTCGACGCCAATGCCAAGAGCCCCGACACCTGCTCCGTCGCCAGCGCCGCCTCGCCGCAGCCGCCACCGCCGGACGCCGAAGCGGACCCTGACAGCACGCTGTTCGACCTCCCGGACCTGCTCCTGGACCTGAGATACGAGACGTCCTCGAGCCTCTCGTGCGGGGCGTCGTGGGCCGTCGATGACGACGTGGCCGGCGGCGTCGTGTTCCGCCTCGAGGAGCCCATGCTGTGGGATTACTGA
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| Protein seq | MDDSHDLASPTSPDTASSSSSSTSTSSSSATVAPKKRPRNDGRHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTFATAEMAARAHDVAALAIKGRTAHLNFPDLAHLLPRPATAAPKDVQAAALLAAAAADFPSVSVDANAKSPDTCSVASAASPQPPPPDAEADPDSTLFDLPDLLLDLRYETSSSLSCGASWAVDDDVAGGVVFRLEEPMLWDY |
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| Function | Ethylene-responsive transcription factor ERF034 [UniProtKB/Swiss-Prot:Q8LBQ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g46440 | LOC_Os04g46440.1 | Chr04 | 27539878 | 27540929 | + | MSU_osa1r7 | ||
| CDS seq | ATGGACGACTCCCACGACCTGGCCTCCCCGACCTCCCCTGACACGGCGTCCTCGTCGTCTTCGTCTACGTCGACATCATCGTCCTCCGCCACCGTCGCCCCGAAGAAGCGGCCGCGCAACGACGGCCGGCACCCGACGTACCGCGGCGTGCGCATGCGGAGCTGGGGGAAGTGGGTGTCCGAGATCAGGGAGCCCCGCAAGAAGTCGCGCATCTGGCTGGGCACGTTCGCCACCGCGGAGATGGCCGCGCGCGCGCACGACGTGGCCGCGCTCGCCATCAAGGGCCGCACCGCGCACCTCAACTTCCCGGACCTCGCGCACCTGCTCCCGCGCCCGGCCACCGCGGCGCCCAAGGACGTGCAGGCGGCGGCGCTGCTCGCCGCCGCCGCAGCCGACTTCCCCTCCGTCTCCGTCGACGCCAATGCCAAGAGCCCCGACACCTGCTCCGTCGCCAGCGCCGCCTCGCCGCAGCCGCCACCGCCGGACGCCGAAGCGGACCCTGACAGCACGCTGTTCGACCTCCCGGACCTGCTCCTGGACCTGAGATACGAGACGTCCTCGAGCCTCTCGTGCGGGGCGTCGTGGGCCGTCGATGACGACGTGGCCGGCGGCGTCGTGTTCCGCCTCGAGGAGCCCATGCTGTGGGATTACTGA
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| Protein seq | MDDSHDLASPTSPDTASSSSSSTSTSSSSATVAPKKRPRNDGRHPTYRGVRMRSWGKWVSEIREPRKKSRIWLGTFATAEMAARAHDVAALAIKGRTAHLNFPDLAHLLPRPATAAPKDVQAAALLAAAAADFPSVSVDANAKSPDTCSVASAASPQPPPPDAEADPDSTLFDLPDLLLDLRYETSSSLSCGASWAVDDDVAGGVVFRLEEPMLWDY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.627247 | 1.247203 | 0.282841 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0550200 | RBH | 0.958161 | 1.768041 | 1.169930 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g43970 | RBH | 0.059533 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0550200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0022130 | RBH | 0.0 | 0.0 | 0.617040 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0022870 | RBH | 0.0 | 1.025172 | 0.597199 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0022600 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0022340 | RBH | 0.071030 | 0.058752 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0022500 | RBH | 0.0 | 3.413157 | 2.201832 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0434300 | RBH | 4.397696 | 23.1253605 | 16.415124 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0021320 | RBH | 0.169596 | 0.0 | 0.122226 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0434600 | RBH | 5.13185 | 4.9320185 | 3.9500125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0021820 | RBH | 0.041216 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0021650 | RBH | 0.0 | 3.006013 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0021740 | RBH | 0.0 | 9.382637 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0022160 | RBH | 0.175548 | 0.227359 | 0.437042 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0022340 | RBH | 0.117596 | 1.381145 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G021570 | RBH | 0.0 | 0.0 | 1.155102 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0021500 | RBH | 0.0 | 0.0 | 0.0 |
