Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g42310 | OGI:04076100 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:25034970-25036582 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAGTCGAATATGCATCTTTTTGTCTGTGTTAGAAAAGAAATTCAGGTACAGTCAAGTTATTAAGTTGGAAGGTTACAGTTCTTGAGTAATCTTTTGGTCTCTGCACTAAATCACTATAATTTCTTTTTTTGTTTCCTTCTGTTGAGTGAGAATTTGCAAGTTTGAAGAAGAATGACAAAGAAAGAAACAAAGAAGGTGACACATGACAAACTTCAGTAGACTGCAGACTGTAGTCCACTGGTGGGCGGTCAGATGATCGGCGGCGGCGGCGTCTCCCAGACGTCGAACACATTCTCCTCGTTGTGCAGGGCGAAGAGGCGATCGCCTCCGATGGAGAAGTCGCAGATGGCGCCGCCGTGGCTCCTCCGCAGCGTGGACGTCAGGACGCACTCGGGGCCACTGAAGACGGAGATGCTGTCGTTCATCGACGAGAAGAGCTGCCCGCCGTGCGTGGCGAGCTTCGGGTAGCAGCTCTCCTCGCTGGGCACCTTCCGGTTCATGAACTTGCTCCGGGAGCTCCACCGCACGCCGCCGGCGTTGCTCCTCAGGTCGAGGAACCCGAGGTCGTCGTACTGGTTGATCACGCAGACGGACCGCTCGTCCTCCATGGCGATGGCGTGGAGCACGCGCTTGTCGTCGAGCGACGCGGCCATGCCGGCGTCGGACCACGACCAGGCCACGTTCTTGTCCCGGAAATCGAGCAGGCCGATGAAACAGTTGTCGGTCTTGGGGAACAGGGTCGCCACCATGAGCGCGTTGGTGGCGTCCAGCCATTGGAGCTTGTCGGCGTCGCCCAAGGCGCAGCCAGGCGGCTCGTAGAAGAAGTCGGCCTGCTCGCCGGTGGCGCGGTCCCAGACGCCGATGCCGTACTCGTTGAGCCTGCCCTTGCAGCTGGCGAAGATGCTCGAGTCCTGGTCGAACGCCAGCGCGCCGGCGGTGAAGGACTTGGCCTGGCGGTCGTGCGCGACGCGGAAGCGGTGCCGCAGGTCCCCGGAGACGGCGGAGAACGCGGCCATCCCGCCGTCGCACTTCCCCAGGCGCTCGCGCGCGGCGATCAGGAGCGTGGCCTCGTCGAGGTACGCCACGTCGTTGACCTGCGAGTGGTCGAGCGACACCGGGCGGCGCTCGTCGAGCATCCAGTTGTAGACGTGCACGGCGCCCCCGTGCGCGACGCAGCACCCCCCGTCGGGCGCGGCGCGGATGGCCGTGCCGTCCCCGGGCGCCCGCCCTGGCACCGACGCCGCGAGGCGGAGGCGGTCGCCGTCGAACGCGCCCCACCGCGCGGCGCGGACGTGGTCGAGGAGGCCGTAGTAGAGCGCTTCCCTGTAGAGCAGCTTCTCCGGCAGCTGCGGCGGCACGTGCAGGCTCCCCGTGCGGAGCAGGTCGAGCAGCACCGCGAAGCACGCCGGGTTCCGGTCGATGAAATACTCCGCCACGCCTCCTCCTCCTCCTCCACCACCACCGCCGCCGCCGCCGCCGGCGGTGGGGGCAAGGTTCCAGGACGAGTCCAGCAGCGCCCCGAGCATGGACTCCCTCCCGGCGTTGGCGAGCGTGGTGGTGGTCGTCTCGAACACCTGCCCGCCCACGTTGAACCGCACCCGCCCGCCTCCCAT
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| CDS seq | ATGGGAGGCGGGCGGGTGCGGTTCAACGTGGGCGGGCAGGTGTTCGAGACGACCACCACCACGCTCGCCAACGCCGGGAGGGAGTCCATGCTCGGGGCGCTGCTGGACTCGTCCTGGAACCTTGCCCCCACCGCCGGCGGCGGCGGCGGCGGTGGTGGTGGAGGAGGAGGAGGAGGCGTGGCGGAGTATTTCATCGACCGGAACCCGGCGTGCTTCGCGGTGCTGCTCGACCTGCTCCGCACGGGGAGCCTGCACGTGCCGCCGCAGCTGCCGGAGAAGCTGCTCTACAGGGAAGCGCTCTACTACGGCCTCCTCGACCACGTCCGCGCCGCGCGGTGGGGCGCGTTCGACGGCGACCGCCTCCGCCTCGCGGCGTCGGTGCCAGGGCGGGCGCCCGGGGACGGCACGGCCATCCGCGCCGCGCCCGACGGGGGGTGCTGCGTCGCGCACGGGGGCGCCGTGCACGTCTACAACTGGATGCTCGACGAGCGCCGCCCGGTGTCGCTCGACCACTCGCAGGTCAACGACGTGGCGTACCTCGACGAGGCCACGCTCCTGATCGCCGCGCGCGAGCGCCTGGGGAAGTGCGACGGCGGGATGGCCGCGTTCTCCGCCGTCTCCGGGGACCTGCGGCACCGCTTCCGCGTCGCGCACGACCGCCAGGCCAAGTCCTTCACCGCCGGCGCGCTGGCGTTCGACCAGGACTCGAGCATCTTCGCCAGCTGCAAGGGCAGGCTCAACGAGTACGGCATCGGCGTCTGGGACCGCGCCACCGGCGAGCAGGCCGACTTCTTCTACGAGCCGCCTGGCTGCGCCTTGGGCGACGCCGACAAGCTCCAATGGCTGGACGCCACCAACGCGCTCATGGTGGCGACCCTGTTCCCCAAGACCGACAACTGTTTCATCGGCCTGCTCGATTTCCGGGACAAGAACGTGGCCTGGTCGTGGTCCGACGCCGGCATGGCCGCGTCGCTCGACGACAAGCGCGTGCTCCACGCCATCGCCATGGAGGACGAGCGGTCCGTCTGCGTGATCAACCAGTACGACGACCTCGGGTTCCTCGACCTGAGGAGCAACGCCGGCGGCGTGCGGTGGAGCTCCCGGAGCAAGTTCATGAACCGGAAGGTGCCCAGCGAGGAGAGCTGCTACCCGAAGCTCGCCACGCACGGCGGGCAGCTCTTCTCGTCGATGAACGACAGCATCTCCGTCTTCAGTGGCCCCGAGTGCGTCCTGACGTCCACGCTGCGGAGGAGCCACGGCGGCGCCATCTGCGACTTCTCCATCGGAGGCGATCGCCTCTTCGCCCTGCACAACGAGGAGAATGTGTTCGACGTCTGGGAGACGCCGCCGCCGCCGATCATCTGA
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| Protein seq | MGGGRVRFNVGGQVFETTTTTLANAGRESMLGALLDSSWNLAPTAGGGGGGGGGGGGGGVAEYFIDRNPACFAVLLDLLRTGSLHVPPQLPEKLLYREALYYGLLDHVRAARWGAFDGDRLRLAASVPGRAPGDGTAIRAAPDGGCCVAHGGAVHVYNWMLDERRPVSLDHSQVNDVAYLDEATLLIAARERLGKCDGGMAAFSAVSGDLRHRFRVAHDRQAKSFTAGALAFDQDSSIFASCKGRLNEYGIGVWDRATGEQADFFYEPPGCALGDADKLQWLDATNALMVATLFPKTDNCFIGLLDFRDKNVAWSWSDAGMAASLDDKRVLHAIAMEDERSVCVINQYDDLGFLDLRSNAGGVRWSSRSKFMNRKVPSEESCYPKLATHGGQLFSSMNDSISVFSGPECVLTSTLRRSHGGAICDFSIGGDRLFALHNEENVFDVWETPPPPII |
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| Function | BTB/POZ domain-containing protein At2g24240 [UniProtKB/Swiss-Prot:Q9ZUH1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g42310 | LOC_Os04g42310.1 | Chr04 | 25034970 | 25036582 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGAGGCGGGCGGGTGCGGTTCAACGTGGGCGGGCAGGTGTTCGAGACGACCACCACCACGCTCGCCAACGCCGGGAGGGAGTCCATGCTCGGGGCGCTGCTGGACTCGTCCTGGAACCTTGCCCCCACCGCCGGCGGCGGCGGCGGCGGTGGTGGTGGAGGAGGAGGAGGAGGCGTGGCGGAGTATTTCATCGACCGGAACCCGGCGTGCTTCGCGGTGCTGCTCGACCTGCTCCGCACGGGGAGCCTGCACGTGCCGCCGCAGCTGCCGGAGAAGCTGCTCTACAGGGAAGCGCTCTACTACGGCCTCCTCGACCACGTCCGCGCCGCGCGGTGGGGCGCGTTCGACGGCGACCGCCTCCGCCTCGCGGCGTCGGTGCCAGGGCGGGCGCCCGGGGACGGCACGGCCATCCGCGCCGCGCCCGACGGGGGGTGCTGCGTCGCGCACGGGGGCGCCGTGCACGTCTACAACTGGATGCTCGACGAGCGCCGCCCGGTGTCGCTCGACCACTCGCAGGTCAACGACGTGGCGTACCTCGACGAGGCCACGCTCCTGATCGCCGCGCGCGAGCGCCTGGGGAAGTGCGACGGCGGGATGGCCGCGTTCTCCGCCGTCTCCGGGGACCTGCGGCACCGCTTCCGCGTCGCGCACGACCGCCAGGCCAAGTCCTTCACCGCCGGCGCGCTGGCGTTCGACCAGGACTCGAGCATCTTCGCCAGCTGCAAGGGCAGGCTCAACGAGTACGGCATCGGCGTCTGGGACCGCGCCACCGGCGAGCAGGCCGACTTCTTCTACGAGCCGCCTGGCTGCGCCTTGGGCGACGCCGACAAGCTCCAATGGCTGGACGCCACCAACGCGCTCATGGTGGCGACCCTGTTCCCCAAGACCGACAACTGTTTCATCGGCCTGCTCGATTTCCGGGACAAGAACGTGGCCTGGTCGTGGTCCGACGCCGGCATGGCCGCGTCGCTCGACGACAAGCGCGTGCTCCACGCCATCGCCATGGAGGACGAGCGGTCCGTCTGCGTGATCAACCAGTACGACGACCTCGGGTTCCTCGACCTGAGGAGCAACGCCGGCGGCGTGCGGTGGAGCTCCCGGAGCAAGTTCATGAACCGGAAGGTGCCCAGCGAGGAGAGCTGCTACCCGAAGCTCGCCACGCACGGCGGGCAGCTCTTCTCGTCGATGAACGACAGCATCTCCGTCTTCAGTGGCCCCGAGTGCGTCCTGACGTCCACGCTGCGGAGGAGCCACGGCGGCGCCATCTGCGACTTCTCCATCGGAGGCGATCGCCTCTTCGCCCTGCACAACGAGGAGAATGTGTTCGACGTCTGGGAGACGCCGCCGCCGCCGATCATCTGA
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| Protein seq | MGGGRVRFNVGGQVFETTTTTLANAGRESMLGALLDSSWNLAPTAGGGGGGGGGGGGGGVAEYFIDRNPACFAVLLDLLRTGSLHVPPQLPEKLLYREALYYGLLDHVRAARWGAFDGDRLRLAASVPGRAPGDGTAIRAAPDGGCCVAHGGAVHVYNWMLDERRPVSLDHSQVNDVAYLDEATLLIAARERLGKCDGGMAAFSAVSGDLRHRFRVAHDRQAKSFTAGALAFDQDSSIFASCKGRLNEYGIGVWDRATGEQADFFYEPPGCALGDADKLQWLDATNALMVATLFPKTDNCFIGLLDFRDKNVAWSWSDAGMAASLDDKRVLHAIAMEDERSVCVINQYDDLGFLDLRSNAGGVRWSSRSKFMNRKVPSEESCYPKLATHGGQLFSSMNDSISVFSGPECVLTSTLRRSHGGAICDFSIGGDRLFALHNEENVFDVWETPPPPII
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.455525 | 0.0 | 0.095230 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0501500 | RBH | 0.507492 | 0.0 | 0.386977 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g39910 | RBH | 0.026580 | 0.016573 | 0.104832 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0501500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0018870 | RBH | 1.032823 | 13.222923 | 10.932137 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0019640 | RBH | 0.449392 | 4.132885 | 3.224945 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0019350 | RBH | 3.365250 | 13.098302 | 11.650710 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0019090 | RBH | 0.588888 | 0.329843 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0019300 | RBH | 6.792532 | 10.309721 | 20.710850 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0392600 | RBH | 1.8724355 | 5.986507 | 0.7491815 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0018100 | RBH | 0.786035 | 0.981752 | 1.682334 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0393000 | RBH | 2.207038 | 4.93683 | 1.50883 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0018590 | RBH | 0.515044 | 0.227356 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0018440 | RBH | 1.172769 | 8.077816 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0018550 | RBH | 10.375357 | 17.159092 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018940 | RBH | 1.576586 | 1.042844 | 1.622586 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0019090 | RBH | 0.630332 | 4.623092 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G018380 | RBH | 0.871654 | 4.044178 | 3.888526 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0018350 | RBH | 3.289518 | 12.619748 | 8.833554 |
