Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g41530 | OGI:04074780 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:24631230-24635840 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTGCAAGTTTTACATATGCTACATATGCCTTTTAAGTTGTTCGGTACTCCACTGTATCCCAGGGATATTCACTGAATTTGCCAATTTGCCATTTCATGAGCTTTTTTTTGGGCGTTCTCTGAAAACATCTGTGTCTTTCCCGCTTCTGCCTTTATTTGCGTGCTTGAAAAAGGATGGCGCTAAGAACAATTCTGATGAGCAACTACTTTACACAACTCATTTACAGATATTATCCTTTAAGCGTTATGAAGTATCATGGGTTCATCGAAGAGCAGTTGGCCATTCAATTCCTTATCGCTTTCTTCAGGTAACTGTTTTATTTGCATTGAATATTCATCAACTGTCAAACAAAATGTGAGTTTGCATTATTCGTTTTCTATTGTTTATCTTCTTACGGCGCCATTTCAGTAGTTTTTCTGTAAATATCATGATGCATCCTTTTAGGGTGATTTCGACATTATTGGAGGTGCTTCACCAATACCAGAGGCTGAAATTGTAAAGGTTATATATCTTGTGATCTCATTTACCTTGTTTTCCCTAACTGCATATGAGGTCCATATTTCATAATTAGTTTATACTCCCTCCATCCCATAATATAAGGGATTTTGGGCATGTCTAGATTCGTAGTACTAGGATGTGTCACATCCCACCAAAATTCCTTATATTATGGGACGGAGGGAGTATCTAAGTTTTGCAACATCAATTGGGATGGATGCAAAGACTACTGAAGATGCTTTCAGCATTAAACATGCACTTTTGTGTTATTGCAAACAATTAATTTCTTGCAACAACAGGTCACTTTGGATGTTGGGGCACACTTTTATGATCCGAAGGCAATAATTATCCGTCTGAATCATAGCAAACTTGCTGAAGCAGTTTGTTCCTGGGCAGGAGTTCCTCAAGAACGGCGACAAAATGTTGCTGAGGTACAGTACTTTGTCTCACCTGTTCCTCACATTTGTGGAATCATCTCAGCTGATACCTTTTTTTTCTGTGTGTGTATCAGTTTTTCTCTTCAACTCTTGTTCAGTATTGGCCAAATAAGGCTGATCGCAAGTCACAATGGAGTTTGATTCGTGGGCAACTATTACAGGTACAAGCACCACAATACACAATCAAACCATGGTGGTACTTTAATAGTTGTTGTTTTATTGATTAATAAAGCATACTGAATACTACTACAGTGAAACTCCTGTATGAATAGTTTTTTTTGGTAAAAACAATATAATGCATCAACGTATTACTAATATTGAACAAGTTGGAAAAAATAATTCTGTTAACAATTTGCAAGATGCAAAGTTTTATCCTATTTAATTAGGTTCGTTATTATACCTTTTCCCTTGTAAATGCTTGATTTACTGAGATGCATTCACAAGATTCCCATGTGAATATTGAAAATGCTTCCATTACTAACAGTTTCCATCTTTCCATGTAATGGGTTAGTGTATAAAAATATTTATTGAATGCTCAGGATCTTCGTCTTTCGGAAGAGGTGGTTGAGAAGCTACATAAAGCTGATCAGAGATTTTGTGGTTCTGCAGATCAAGTACTTGCTAGATTAAGAGGGACCCTGTTCTATGGTAGTGATTAAGCCCCTCTACATTGTCTGCTGTAGTCTGCAAATATGTACTAAAATGTCAATCATTCTATGTTTCTTGTTGCAGATAAATCTGCTTGCAAGGCTCTCGATGAGATCTCAGCATTTCTCAAATGTTTGAGAATATGGTCAATCGAAGAACATATTACTATTGATGTACTCATGCCTCCTTCAGAATGTTACTACACAGATCTGTTTTTTCAGGTTAATAACTACAACCGGATGTGGAGCAATTCTTTTTCAACTATAATCATGGAGACCATTTTTTTCAATCCACCTTTATCGTTCGAGTGATGGCTAGTTCATTTCCGCCTTGAACCTAGTGTTGCAGTTCTTTTTATTTGGTTGCATCAAAAGGGCAAACTTGATAAAATGGAACAACAACAATCTTCTACTCCCTCCGGTCATAAATATTTGACATTTAGGACAAGATTCGGTCAAACTTTTAAAATTCCAGCCAATAATTTTATATTAGAATAATTTTATGATATAATGATAGTACTTTTTGAGGCAAATCTACCATATACAATTTCTTCCGTTTTCAAACTAAGCATTTTAGAAATTATTGGTGGTCGTAATTTTAAAAGCCTGACTGAATCTCATCCTAAATGTCAAACATTTATGACTGGAGGGATTATGTGTGTATTCAGTGAAATGATTTGATAGATCTCATGTTAATATATTCCTTTTTAGCGCTAATGGCATATTTTCTTTTCTGAAATTCCACTTATATATTTTTACTATGGCCCATCAATTTACTGGGTCTCAACACAGATCTATGTGAAAGAAGGAAACCCTGGATCAAGTTCCCATGAAAAGTTACTTGCCATTGGGGGGCGATATGATTGGTTGATAGAGCAAGCTTGGGATAGGACATATGTAAGTTGTATTTGATGCTTCCTGTATACTTATACGTGTCCATGTAGATTTGGTTCTAATAATACTAAGTGAATGCTTACGATGACCACTTGGCTAAGTACACTCTGACCATGGCCGAGGGTTCACATCCAGCTGTTCTATAGTGTAGTCTTTTCACCAGCAATTTAGTGGTGCTTCTACATGTTTCAAATTGTTCTTTTTCACTGAAGTCCTGATAAAGAGATGGATAATTTACTTCCAATAAGAAGTCCTGATAAAGAGATGGATAATTTACTTCCAATAAGATTATAGGCCTTTTCAGGAGAAGTAGAGAGATTGGATCCTACAGAAGAGGAGTGAAAAGGAGTGGCCATCTCCATATGAGGAGAAGTTAGGATTTTTGTGTGTGCACGCCTTTTTATCATGCCATCCCCTGGATCTCATTCTTTGTTTTCTGAGGAAAACCTTGAGGCAGAACATGGAAAGACCACTTAGATAGCTATGCTGTCATCAAATATTTAGACATTCTTAAGTCTACTTGTTTCTTAAATGAGTCAGGTAGTCATATACTACTATATGACAATATTTTCTACTGTGATTGCCTACGTGATCTAACTACTTGTATTTGATAACCCTCACAGAAATCCAAACCCCCGGGTGCTGTTGGTGTCAGCATTGCACTTGAGAAATTTCTTCCTAATAGTCCTTCGTCTGACATTGGGTTCCCAAGGTTACCTCCAAGTGAACAAATAAATTGCTTCCCTATGCTTTACGCCATCTCCAATTGTTCGATGGGATTTTTTTTTTACTTGCTAACATATGTGGCTTTTAGGATTGAACCGAGCATCAGTGTTCTTGTTTGTTCAAAGGGAGGTGGCGGTCTTTTGAATGAGCGTATGGAACTTGTTGCAGAACTTTGGGAAGCTAATATAAAGGTAGGTGCTGCAGAAGTCTTTACCTGCAAGGGTTTGTGACACAAGTCTGTTTTTATCAGTACTGAGAGTTTACTATTATCAGGCCCAATTTGTCCCTCAGGAAGATCCAAGTCTTCAGGAACAATATGAATATGCCAGTGATCATGACATCAAATGCCTTGTGTTCATCACTGAAGCAGGTGTCTCACAAACAGAACTTGTGAAGGTAAATACATTAACGTTGTGTTACAGGTGCATTTGTGCTTTACACTGTCAAGAAGTTATAATTCTCACCAACAGATTAAAAAATCGGGGAAATGTCTTGTGCATACCTTACTGCCATGCATTTACTTATTTGAGCAATGCTCTGCTATTGAGTAGTGAGTACAAACCTTTTTAAAGCATTTGAACTTTGGTTTACCATTGTGCTGCTTGTATCTTAGCTGTACTTTCAAGTAAGTAATGATTTTCATGTTTTTGGAATGTAGGACTAATTTGAACTGTATTTTCATATGAACAGCAGTGAGTTATATTGTGTCGATACTGATTAAATTACTGGTTGTTTAACATAAATTTATGTAATTCATGTTTCCTATTTCAAAAGAGTTGTCAGGAAGTACCATGTGTGATAATGAATTCATCCGACATAAACACAAACTTAACGTCTTTGGTATTCATTGGTCCATTTTATTTGAGGAAAACTAAATAAGTTCTTTACTGTTTTAGAATTTTGCTCAACCTTTTATGCAGAAACTTTTTTATAATTTTATGTGTTTTCCTTCTATTAAGGTTCGACATCTGGATGCAAAAAGGGAGAAGGAAGTTAAAAGAGAGGAACTTGTAAAGTTCTTATCTGATGCAATATGTTTACAATTCAAAAATCCTACAATCTGGAGCTGATTGGCAGCCTGCTCTTTATTCACTTCAGGTTTGCTTTGGCAAAGAATCAAAACTTGCCAAATCTTTAACTCCCTTCCTTGAGAATCTCTTTGGATTCTGGAATTACATTCTCTTTATAAAACTAAGTTAGATTTGAGGTAGCTATAGATATAAACTTCCAGGTGAAAACTCACTCTCTAGTCTGTACAAGCATGAAGCATGTGGAATCGTTCCAGCATTTTTCATGATTGTTTTTGTGATACGGAAAAGTGATGTGATTTTTATCTTTGTGCAGTCTTGGTTGCCCTTCTGTGAACCAAGATTACGCACCGTGGCTTCGGTTCAAGGTTCAAGGCAGTGA
More
|
||||||||||
| CDS seq | ATGTGCAAGTTTTACATATGCTACATATGCCTTTTAAGTTGTTCGGTACTCCACTGTATCCCAGGGATATTCACTGAATTTGCCAATTTGCCATTTCATGAGCTTTTTTTTGGGCGTTCTCTGAAAACATCTGTGTCTTTCCCGCTTCTGCCTTTATTTGCGTGCTTGAAAAAGGATGGCGCTAAGAACAATTCTGATGAGCAACTACTTTACACAACTCATTTACAGATATTATCCTTTAAGCGTTATGAAGTATCATGGGTTCATCGAAGAGCAGTTGGCCATTCAATTCCTTATCGCTTTCTTCAGGGTGATTTCGACATTATTGGAGGTGCTTCACCAATACCAGAGGCTGAAATTGTAAAGGTCACTTTGGATGTTGGGGCACACTTTTATGATCCGAAGGCAATAATTATCCGTCTGAATCATAGCAAACTTGCTGAAGCAGTTTGTTCCTGGGCAGGAGTTCCTCAAGAACGGCGACAAAATGTTGCTGAGTTTTTCTCTTCAACTCTTGTTCAGTATTGGCCAAATAAGGCTGATCGCAAGTCACAATGGAGTTTGATTCGTGGGCAACTATTACAGGATCTTCGTCTTTCGGAAGAGGTGGTTGAGAAGCTACATAAAGCTGATCAGAGATTTTGTGGTTCTGCAGATCAAGTACTTGCTAGATTAAGAGGGACCCTGTTCTATGATAAATCTGCTTGCAAGGCTCTCGATGAGATCTCAGCATTTCTCAAATGTTTGAGAATATGGTCAATCGAAGAACATATTACTATTGATGTACTCATGCCTCCTTCAGAATGTTACTACACAGATCTGTTTTTTCAGATCTATGTGAAAGAAGGAAACCCTGGATCAAGTTCCCATGAAAAGTTACTTGCCATTGGGGGGCGATATGATTGGTTGATAGAGCAAGCTTGGGATAGGACATATAAATCCAAACCCCCGGGTGCTGTTGGTGTCAGCATTGCACTTGAGAAATTTCTTCCTAATAGTCCTTCGTCTGACATTGGGTTCCCAAGGATTGAACCGAGCATCAGTGTTCTTGTTTGTTCAAAGGGAGGTGGCGGTCTTTTGAATGAGCGTATGGAACTTGTTGCAGAACTTTGGGAAGCTAATATAAAGGAAGATCCAAGTCTTCAGGAACAATATGAATATGCCAGTGATCATGACATCAAATGCCTTGTGTTCATCACTGAAGCAGGTGTCTCACAAACAGAACTTGTGAAGCTGTACTTTCAATCTTGGTTGCCCTTCTGTGAACCAAGATTACGCACCGTGGCTTCGGTTCAAGGTTCAAGGCAGTGA
More
|
||||||||||
| Protein seq | MCKFYICYICLLSCSVLHCIPGIFTEFANLPFHELFFGRSLKTSVSFPLLPLFACLKKDGAKNNSDEQLLYTTHLQILSFKRYEVSWVHRRAVGHSIPYRFLQGDFDIIGGASPIPEAEIVKVTLDVGAHFYDPKAIIIRLNHSKLAEAVCSWAGVPQERRQNVAEFFSSTLVQYWPNKADRKSQWSLIRGQLLQDLRLSEEVVEKLHKADQRFCGSADQVLARLRGTLFYDKSACKALDEISAFLKCLRIWSIEEHITIDVLMPPSECYYTDLFFQIYVKEGNPGSSSHEKLLAIGGRYDWLIEQAWDRTYKSKPPGAVGVSIALEKFLPNSPSSDIGFPRIEPSISVLVCSKGGGGLLNERMELVAELWEANIKEDPSLQEQYEYASDHDIKCLVFITEAGVSQTELVKLYFQSWLPFCEPRLRTVASVQGSRQ |
||||||||||
| Function | eIF-2-alpha kinase GCN2 [UniProtKB/Swiss-Prot:Q9LX30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g41530 | LOC_Os04g41530.1 | Chr04 | 24631230 | 24635840 | + | MSU_osa1r7 | ||
| CDS seq | ATGTGCAAGTTTTACATATGCTACATATGCCTTTTAAGTTGTTCGGTACTCCACTGTATCCCAGGGATATTCACTGAATTTGCCAATTTGCCATTTCATGAGCTTTTTTTTGGGCGTTCTCTGAAAACATCTGTGTCTTTCCCGCTTCTGCCTTTATTTGCGTGCTTGAAAAAGGATGGCGCTAAGAACAATTCTGATGAGCAACTACTTTACACAACTCATTTACAGATATTATCCTTTAAGCGTTATGAAGTATCATGGGTTCATCGAAGAGCAGTTGGCCATTCAATTCCTTATCGCTTTCTTCAGGGTGATTTCGACATTATTGGAGGTGCTTCACCAATACCAGAGGCTGAAATTGTAAAGGTCACTTTGGATGTTGGGGCACACTTTTATGATCCGAAGGCAATAATTATCCGTCTGAATCATAGCAAACTTGCTGAAGCAGTTTGTTCCTGGGCAGGAGTTCCTCAAGAACGGCGACAAAATGTTGCTGAGTTTTTCTCTTCAACTCTTGTTCAGTATTGGCCAAATAAGGCTGATCGCAAGTCACAATGGAGTTTGATTCGTGGGCAACTATTACAGGATCTTCGTCTTTCGGAAGAGGTGGTTGAGAAGCTACATAAAGCTGATCAGAGATTTTGTGGTTCTGCAGATCAAGTACTTGCTAGATTAAGAGGGACCCTGTTCTATGATAAATCTGCTTGCAAGGCTCTCGATGAGATCTCAGCATTTCTCAAATGTTTGAGAATATGGTCAATCGAAGAACATATTACTATTGATGTACTCATGCCTCCTTCAGAATGTTACTACACAGATCTGTTTTTTCAGATCTATGTGAAAGAAGGAAACCCTGGATCAAGTTCCCATGAAAAGTTACTTGCCATTGGGGGGCGATATGATTGGTTGATAGAGCAAGCTTGGGATAGGACATATAAATCCAAACCCCCGGGTGCTGTTGGTGTCAGCATTGCACTTGAGAAATTTCTTCCTAATAGTCCTTCGTCTGACATTGGGTTCCCAAGGATTGAACCGAGCATCAGTGTTCTTGTTTGTTCAAAGGGAGGTGGCGGTCTTTTGAATGAGCGTATGGAACTTGTTGCAGAACTTTGGGAAGCTAATATAAAGGAAGATCCAAGTCTTCAGGAACAATATGAATATGCCAGTGATCATGACATCAAATGCCTTGTGTTCATCACTGAAGCAGGTGTCTCACAAACAGAACTTGTGAAGCTGTACTTTCAATCTTGGTTGCCCTTCTGTGAACCAAGATTACGCACCGTGGCTTCGGTTCAAGGTTCAAGGCAGTGA
More
|
|||||||
| Protein seq | MCKFYICYICLLSCSVLHCIPGIFTEFANLPFHELFFGRSLKTSVSFPLLPLFACLKKDGAKNNSDEQLLYTTHLQILSFKRYEVSWVHRRAVGHSIPYRFLQGDFDIIGGASPIPEAEIVKVTLDVGAHFYDPKAIIIRLNHSKLAEAVCSWAGVPQERRQNVAEFFSSTLVQYWPNKADRKSQWSLIRGQLLQDLRLSEEVVEKLHKADQRFCGSADQVLARLRGTLFYDKSACKALDEISAFLKCLRIWSIEEHITIDVLMPPSECYYTDLFFQIYVKEGNPGSSSHEKLLAIGGRYDWLIEQAWDRTYKSKPPGAVGVSIALEKFLPNSPSSDIGFPRIEPSISVLVCSKGGGGLLNERMELVAELWEANIKEDPSLQEQYEYASDHDIKCLVFITEAGVSQTELVKLYFQSWLPFCEPRLRTVASVQGSRQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.290634 | 2.671440 | 0.358894 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0492600 | RBH | 4.115965 | 5.987815 | 2.896758 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0492600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0018240 | SBH | 2.574073 | 7.548616 | 8.430988 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0019020 | SBH | 0.238010 | 1.082019 | 3.401791 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0018730 | SBH | 4.226533 | 5.218070 | 13.852420 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0018440 | SBH | 0.546359 | 0.215875 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0018640 | SBH | 13.974153 | 4.267329 | 15.693559 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0384300 | SBH | 7.419571 | 18.64783 | 9.775972 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0017420 | SBH | 0.719159 | 0.675335 | 1.310210 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0383900 | SBH | 8.5928735 | 26.4042865 | 12.220586 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0017920 | SBH | 0.139550 | 0.116445 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0017770 | SBH | 0.948003 | 3.307356 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0017850 | SBH | 13.785502 | 6.824447 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0018270 | SBH | 1.697007 | 0.935214 | 0.993109 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0018430 | SBH | 1.136284 | 12.191046 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G017740 | SBH | 1.860378 | 1.820064 | 1.657134 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0017650 | SBH | 13.769135 | 25.369385 | 7.455039 |
