Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g39940 | OGI:04072380 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:23782369-23784821 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCGACAACATACACTGCTGCGAAACAAGCGCAAGCTTACAACGGATTTCGAAACTTGCGAGAGCTTTAACCCGAGAGCTCAGATGCGGCGGGCCGCCGGGCACAGGGTGCTCCCCGGACGAGAAGCCGGAGGTATTGGCGATAGGCGGTTGAGGAACAAAGGGGTTAAGGTTCCCCAGGGAGTCACCGGCGAGGAACAAAGGGATTAAGTTCCCCCCATAACTCCGCGGAGGCCTTGCCGCCGCCGATGCGTGGAACGGCGGCGGTCGTCGGCGGAGGACTACGGAGGCTTTGGGACGGGAAGCGTGTCAGGCGAGCGAGAAGAAGACGGTGGAAGCAAAGCAACGGCGGGTGCAAAGCCGGCGTGTGGTCCACTAGCGCACTAGTGCGCAGATTGTGCAGCCTATAGGGCCTCCGGCCCACTTCCGGTGTGTGCTTGGGCCTCAGGCCTCCGGCCTCCCACTTCGGCCCATCACGATTCGTAAAAGGCCCGCCCCGCTTGGAGCAACCTACTCCGTCTCAAGACTCTCAACATAGTTCCCCTGTCTCATAGAACAAATCTAGCATAAGATAGTTGCCAAATACAAAGTTTTATTTTCCTTTCGTTATCTTCTTTCTTCTTCATATAAGTTTGCTTTTTATGGAACGAAAGAAGAGTAAATAATACACTGTAACGAATTCGGTGTATTATTCAGGTTATTAATTAATTTATTTTGACACTAGGAGTACAAGTAAACCCACAGCCTACCCCACCCGCCATCCCCGCCACTCTCACCGAAACGCGCGGCACATGCCAAGCTCCCGTCTCCGCCGCGGCGCACCCCGCACCTGCAGTATCGCACGCGCGGCGCGGCGTGCTGCTTCTGGAACGGCGGATGTACAGCACAGCAGTATCACTCCCCTCTCTACTATCTCTGTTTGTCCTGTGGGCGTCGCAACGTTACACTTGGACCTTTCGGAAAATGAAACCCATCATCAATGTTCGGGAAGTATAGCAGTATCCGGCGAGCAGAACCGAAAGGTAGTAAAAAAATTTCGAAATCCACCGTACGTGTACGTGCGGGTGCGTAAACGCGTACTACTCCTGCTCGCTTCCTAGCTGGAGCATACACGTACCGGATTCGAAATCCTAAATGCGCGCCATGAATTACTACTACTCCTACTATATCTCTCCCTCCCCCGCATTTAGTGAGATGGACACCGCGCGTTTGTCCGCCCGTTAATTCCGTGCTGCTCTGCTGCCGCTGCGGCTGCGGCTTTGCCCCTTCTATACTCTGCTCCTGCGCACGCACGCACGCACGCGCATTTCAAATCAAAATCATCCCCCACGCCTTCCTCTGCTTCTTCTCCTTCTTTCGCAGGTGCCCCCATGAGCAGAGGAGACAGAGTGGATAATCAGCGAGTGGTCGGAGGAGGAGGAGGATGCACGCGTGCTTCCATGGCGGCGGTGGTGGTGGTGGCAGGATCAGGTCCATCCGGATCATCAGGGACCTCACCAAGAACGTACGCCAGCAGCTGCGCACACTGTGAATGCATGGTGTTATGGATGGAGGTGTGAGTTTGATTTTTGGTGATTTTTTGTGTGCGTTTGCAGATGAAGGCCATGTCGCTCAAGGTGAAGATGGGCGGTGGCGGAGGGAGTCACGGGCGGACGCGGCGGCGGAGACGGGGGAAGCGGCCGGAGGAGGAGGACGAGGAGGAGGTGGTGGAGATGGAGGGGAAGGACATTGCGGCGGCGGCGGCGCCGTCCGCGTCGGCCAAGATCGCGCCGGCGCAGGCGCAGGAAGCCGATGGCAACGAGGCCACGACTAGTGGTGGCGGCGGCGATGACGATCGCCGGCGGGGCAAGGACGAGCAAGGAGGGAGGGGGCAGGAGCACAGCGACAAGTGCTGCTGCCCACCGGAGGACGGCGCCGGGGTGGTGGAGGAAGATGAGGCAATGGCCACCACGGATCATGCCATGGCGGCGGCGGCGGCGGAGGAGGAGGAGAGCGATCACGAGTGGGTGGCGGAGCCGGAGCCCGGGGTGCTGATGACGTTGGTGGCGCGCCCCGACGGCACCAACCACCTCCGCAGGATACGGTTCAGCGAGGAGCTGTTCGACGGCGCCCGGGCGGCGCAGCGGTGGTGGGCGGACAACTACGACGCCATCGTCGAGCTCTACAGCGTGGTCCAGCCCGAGCCCTCGCACGACGGCGGCGACGACGACGACGACTCCGAATCGGTGCCCGCCACCCCGTGCCAGTCCGAGGACGACGACCACCGCCGGCGGCGGGAGCAGGGGTCCGATTCGGCCTCCAACTTCTCCGGCCCGTCCAGTGGCAGCGGTAGCGGCAGCGGCAGCGGTGGCAGGTCGGCCAGCACCGTCGGCTCCCCCATCCTCGGCCTCGTCACCGCGCCCGGCGGCGGCGGCGGCGCGCCCGCGACGCCGACCGAGCACAGCCCGACGTAA
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| CDS seq | ATGCGACAACATACACTGCTGCGAAACAAGCGCAAGCTTACAACGGATTTCGAAACTTGCGAGAGCTTTAACCCGAGAGCTCAGATGCGGCGGGCCGCCGGGCACAGGGTGCTCCCCGGACGAGAAGCCGGAGGTGCCCCCATGAGCAGAGGAGACAGAGTGGATAATCAGCGAGTGGTCGGAGGAGGAGGAGGATGCACGCGTGCTTCCATGGCGGCGGTGGTGGTGGTGGCAGGATCAGGTCCATCCGGATCATCAGGGACCTCACCAAGAACGTACGCCAGCAGCTGCGCACACTGTGAATGCATGGTGTTATGGATGGAGATGAAGGCCATGTCGCTCAAGGTGAAGATGGGCGGTGGCGGAGGGAGTCACGGGCGGACGCGGCGGCGGAGACGGGGGAAGCGGCCGGAGGAGGAGGACGAGGAGGAGGTGGTGGAGATGGAGGGGAAGGACATTGCGGCGGCGGCGGCGCCGTCCGCGTCGGCCAAGATCGCGCCGGCGCAGGCGCAGGAAGCCGATGGCAACGAGGCCACGACTAGTGGTGGCGGCGGCGATGACGATCGCCGGCGGGGCAAGGACGAGCAAGGAGGGAGGGGGCAGGAGCACAGCGACAAGTGCTGCTGCCCACCGGAGGACGGCGCCGGGGTGGTGGAGGAAGATGAGGCAATGGCCACCACGGATCATGCCATGGCGGCGGCGGCGGCGGAGGAGGAGGAGAGCGATCACGAGTGGGTGGCGGAGCCGGAGCCCGGGGTGCTGATGACGTTGGTGGCGCGCCCCGACGGCACCAACCACCTCCGCAGGATACGGTTCAGCGAGGAGCTGTTCGACGGCGCCCGGGCGGCGCAGCGGTGGTGGGCGGACAACTACGACGCCATCGTCGAGCTCTACAGCGTGGTCCAGCCCGAGCCCTCGCACGACGGCGGCGACGACGACGACGACTCCGAATCGGTGCCCGCCACCCCGTGCCAGTCCGAGGACGACGACCACCGCCGGCGGCGGGAGCAGGGGTCCGATTCGGCCTCCAACTTCTCCGGCCCGTCCAGTGGCAGCGGTAGCGGCAGCGGCAGCGGTGGCAGGTCGGCCAGCACCGTCGGCTCCCCCATCCTCGGCCTCGTCACCGCGCCCGGCGGCGGCGGCGGCGCGCCCGCGACGCCGACCGAGCACAGCCCGACGTAA
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| Protein seq | MRQHTLLRNKRKLTTDFETCESFNPRAQMRRAAGHRVLPGREAGGAPMSRGDRVDNQRVVGGGGGCTRASMAAVVVVAGSGPSGSSGTSPRTYASSCAHCECMVLWMEMKAMSLKVKMGGGGGSHGRTRRRRRGKRPEEEDEEEVVEMEGKDIAAAAAPSASAKIAPAQAQEADGNEATTSGGGGDDDRRRGKDEQGGRGQEHSDKCCCPPEDGAGVVEEDEAMATTDHAMAAAAAEEEESDHEWVAEPEPGVLMTLVARPDGTNHLRRIRFSEELFDGARAAQRWWADNYDAIVELYSVVQPEPSHDGGDDDDDSESVPATPCQSEDDDHRRRREQGSDSASNFSGPSSGSGSGSGSGGRSASTVGSPILGLVTAPGGGGGAPATPTEHSPT |
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| Function | Putative protein Brevis radix-like 5 [UniProtKB/Swiss-Prot:Q2QWK1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g39940 | LOC_Os04g39940.1 | Chr04 | 23782369 | 23784821 | + | MSU_osa1r7 | ||
| CDS seq | ATGCGACAACATACACTGCTGCGAAACAAGCGCAAGCTTACAACGGATTTCGAAACTTGCGAGAGCTTTAACCCGAGAGCTCAGATGCGGCGGGCCGCCGGGCACAGGGTGCTCCCCGGACGAGAAGCCGGAGGTGCCCCCATGAGCAGAGGAGACAGAGTGGATAATCAGCGAGTGGTCGGAGGAGGAGGAGGATGCACGCGTGCTTCCATGGCGGCGGTGGTGGTGGTGGCAGGATCAGGTCCATCCGGATCATCAGGGACCTCACCAAGAACGTACGCCAGCAGCTGCGCACACTGTGAATGCATGGTGTTATGGATGGAGATGAAGGCCATGTCGCTCAAGGTGAAGATGGGCGGTGGCGGAGGGAGTCACGGGCGGACGCGGCGGCGGAGACGGGGGAAGCGGCCGGAGGAGGAGGACGAGGAGGAGGTGGTGGAGATGGAGGGGAAGGACATTGCGGCGGCGGCGGCGCCGTCCGCGTCGGCCAAGATCGCGCCGGCGCAGGCGCAGGAAGCCGATGGCAACGAGGCCACGACTAGTGGTGGCGGCGGCGATGACGATCGCCGGCGGGGCAAGGACGAGCAAGGAGGGAGGGGGCAGGAGCACAGCGACAAGTGCTGCTGCCCACCGGAGGACGGCGCCGGGGTGGTGGAGGAAGATGAGGCAATGGCCACCACGGATCATGCCATGGCGGCGGCGGCGGCGGAGGAGGAGGAGAGCGATCACGAGTGGGTGGCGGAGCCGGAGCCCGGGGTGCTGATGACGTTGGTGGCGCGCCCCGACGGCACCAACCACCTCCGCAGGATACGGTTCAGCGAGGAGCTGTTCGACGGCGCCCGGGCGGCGCAGCGGTGGTGGGCGGACAACTACGACGCCATCGTCGAGCTCTACAGCGTGGTCCAGCCCGAGCCCTCGCACGACGGCGGCGACGACGACGACGACTCCGAATCGGTGCCCGCCACCCCGTGCCAGTCCGAGGACGACGACCACCGCCGGCGGCGGGAGCAGGGGTCCGATTCGGCCTCCAACTTCTCCGGCCCGTCCAGTGGCAGCGGTAGCGGCAGCGGCAGCGGTGGCAGGTCGGCCAGCACCGTCGGCTCCCCCATCCTCGGCCTCGTCACCGCGCCCGGCGGCGGCGGCGGCGCGCCCGCGACGCCGACCGAGCACAGCCCGACGTAA
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| Protein seq | MRQHTLLRNKRKLTTDFETCESFNPRAQMRRAAGHRVLPGREAGGAPMSRGDRVDNQRVVGGGGGCTRASMAAVVVVAGSGPSGSSGTSPRTYASSCAHCECMVLWMEMKAMSLKVKMGGGGGSHGRTRRRRRGKRPEEEDEEEVVEMEGKDIAAAAAPSASAKIAPAQAQEADGNEATTSGGGGDDDRRRGKDEQGGRGQEHSDKCCCPPEDGAGVVEEDEAMATTDHAMAAAAAEEEESDHEWVAEPEPGVLMTLVARPDGTNHLRRIRFSEELFDGARAAQRWWADNYDAIVELYSVVQPEPSHDGGDDDDDSESVPATPCQSEDDDHRRRREQGSDSASNFSGPSSGSGSGSGSGGRSASTVGSPILGLVTAPGGGGGAPATPTEHSPT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0475250 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0475250 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0016910 | RBH | 0.0 | 1.039687 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0017700 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0017400 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0017120 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0017350 | RBH | 0.406176 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0370700 | RBH | 0.1495095 | 0.178308 | 0.266729 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0016140 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0369000 | RBH | 0.1913815 | 0.0835355 | 0.3591425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0016700 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0016560 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0016580 | RBH | 0.729278 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0017070 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0017180 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G016410 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0016420 | RBH | 1.633699 | 1.210432 | 0.949269 |
