Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g38042 | OGI:04069060 | 4/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:22645052-22648129 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGAGTGCCATGGCACGGCAAATCAATTTACTCTGCCAAATTGTACACTTTTTTCAGTTTGTCTTCATGAACATAAATCAAATCGATACGTTCATTGATCATTTCAACAGAGAAAAGGAAACAGGTAGATATGATATGCAATCATGCATGCAGTAATCCAAAATTCGACTCCAAAGTCTTCCATTAACACCGAGAGATTCGCGTTCATTCATAATGTGTGAGAGCAACAAACCTGGACAACATCAAACATGTGCAGCATCCAGCACGCGACGAGAATTCCATAGTTGATGGCAATAATTGGGATCGCCCCACCAATAATGGGAACGGCGCGGCCAATCAGCACGAGAGGCGCACGCCCCATCGCGTGGGTGACGTGGCAGCTCGTGCGCGCGATGCCCGCTGACCTGGACGCCACGTGTGCGAGCACCCTGTACAAGCGATGCATCTCTCTCACCATGTTGGCCTTCCAACGTTTGAGTATGTTGTTGCAGACTCCTTTGCAGAAGAAATCACGAACGCATCTTTTTTTTTTTTAACGGAAAACAGCACTAGATTGCCTTTTCATTGAATAGAGCAGGAGAAAATACAAATCCTTAGGGGTAAGAGGAAAACGGAGAACCACTATAGCTGTACACTATACAGAGTGCGGGATTAACTCACGCAACCGCTTAGCTCCTGCTAAAGCCCAAAGGCTCGCCTCCTCTTTGATTTTCATTAGTAGGAAGTTCGTTGCCACCTCTTTGTGATCAAAAATCCGCCGATTCCTCTCTTTCCAAATTTCCTAGACGACTAACAACATGAGCGATCGAAGTCCTTTTTTCAGGACACTAGGCGTGTTTACAATGTTCTCCCGCCACTGTTTGACTGACTAGGCTTCCTCCCATTCCGTTGGGTCCATCTGCTGATAGCCCACCCATGCAGAGATGAGGTGCCAGATCCTCTTGGTGTATCTACAAGTGGCAACGAGGTGCAATGCCGTCTCAGTCTCGCGGCGGCAAAGAGGGCAACAACCATTGTTCTGCCATCCCCTGGTCGCAAGCCGGTCTGAAGTCCAGACTCTATTCTGAATGATGAGCCAAGCATGAAATTTGCATTTCCCCGGCGCCCAGGCTTTCCAAATCAAGGAATTGAAGTTTGTGCTCGGCACCCCGCAGCACTGTGCATGGTAAGCCGAGGAGGCCGTGTAGTGCCCGTTGTTTGTGAACTTCCAAGTAATCTGATCCGGTTCTCCAACGTCTAAGTGCACATTTCGGACCGCTTCCCACAGTGCGACTAGCTGTTCGACGAGATCGACTGTGATAGATGATTGTGAATCAAGCTTCAAATCTTGCACCCAGGCGTCGTCCTCCTTTCCTTGCCGAAGGGATTTTCCTCTGTTTTTTGAGATCGTATAGACAAGCGGCATGAGGTCTTTGGGTCTTCGCCCACCAATCCACGCGGACTCCCAAAATCGCACCGTGTTTCCGTCCCCTATTGTTATGTTTGTTGAGGCGGCGAAGAGGTTCCTATCTATTTCATCACATGGCGTCTCCAGCCCCACCCAAGGTTTGGTCTGGTCCTTCCATTCATGCCACAGCCATCTCAACCTCAAGGCCCTCGTGAATTTGTCCAGATTTAGGACCCCCAATCCTCCTTGGCTGGTCGGCATGCACGTCTTTGTCAAATTGACCTTGCATTTCCCTCCGGTAATATCACCCGTGCCTGCCCAGAGGAAGCGGCGCCGCTGCTTGTCTAGCTGCTCGAGGGATTCCTATGTGATTTTCAGAGCGGTCAGAAGGTAGATTAGTTGCGCCGTTAGCACAGATTTTACGAGCATAGTTCTTCCAGCCGCTGCCATGTTTTTTACTCTCCAGCTTGCTACCCTTCCGAAAATTTTGTCAAAGACAGGTTGCAAGTCCACCTTCCGCAGTCTTCCCAGAGCTAGGGGGAGGCCCAAGTACTTGATGGGGAAATTTACCCTCACCACAGGGACGCCCTCAAGAACCTCATTCAACTCGATGCCGCCGCATCTGATGGCCGCCATTTGGGATTTCTGAAAATTGGTGACGAGCCCAGTTGCAGCGCCGAAGCGCTACAGGATGTCCGTGAAGGCCGAGAAGGCAATTTGCAAGGTATCACAAGTCATTTGTGCAATGGATATAGTTTGTGCCGACGAATATATCCAAAACGCAAGTGCTAAAATGAATCCACTGCTTTTTTATCCAAAAAGATAGCCTACTTTTAACAAGTTATCGTTTCCAATAGATTCAGTGTTAAGATACTGGTGATTGGACAGTGATAAGGTGCTTGTGTGGTTGGTTGGCTCAATTTGCTCTGGTGAGATCTGTATCAAATGCCCCTACCTAATCAAACAAGATGTACTTGGTAGCATTAAGAAAAGGATGACCACATCTATCTCAGTAGTATGTGGCATCTAGCAAGAAAGTTCACTTGTCTCATTCGTTAAAGAAAGTTCACTAATCTCGCCATGACACCATACCTTACCTGACATGATCTGAGCTGAAGTGCTGTGGCCATCAATAATGGCCCAGGAAAACAGTTACTATTAAACTCAGAATTCACTTAACACCAGATCTCTTCTATCTAAATTCTTAATCCTGACAATTCGATCGTTTACTGAGTATTCCTCTGTTTTCATTTCCTGACAAGATATTGTTCAGTCTTCAGTGAAAAAAAGCACACAAGATAGAGCTATATTTGCGGGGAAGCTCTGAGAAACTCTGAACCGAGTACTAGGCCCCGCTTCCATCACCAAACTCCACAATCTAGCCTACTCAGAAAAATTCAGGCGCACGAATTCTATCGATTCAGAAAATACATACTCTGCTTCTGTATCTACCTACTCCAACAACGTTTGCGGAGTAACTTCGGCCAACACCACCACCAGGGGGCATCAAGCACATCCAGTTCGCTCACTTAATTGCAGACAGAAACACATGAACAACAGAACAAGTAACTGTCACTCACCGTAGCGGCTCACTCCGTCGGTTCGGCCCTGCTCCACGAACACGCCGGCGAGACGTCGGCGGCGGCGAGCTTGCTCTTCTCTAACTGCAGCTCGCCTGCTGATCACTCGAGC
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| CDS seq | ATGCCGACCAGCCAAGGAGGATTGGGGGTCCTAAATCTGGACAAATTCACGAGGGCCTTGAGGTTGAGATGGCTGTGGCATGAATGGAAGGACCAGACCAAACCTTGGGTGGGGCTGGAGACGCCATGTGATGAAATAGATAGGAACCTCTTCGCCGCCTCAACAAACATAACAATAGGGGACGGAAACACGGTGCGATTTTGGGAGTCCGCGTGGATTGGTGGGCGAAGACCCAAAGACCTCATGCCGCTTGTCTATACGATCTCAAAAAACAGAGGAAAATCCCTTCGGCAAGGAAAGGAGGACGACGCCTGGGTGCAAGATTTGAAGCTTGATTCACAATCATCTATCACAGTCGATCTCGTCGAACAGCTAGTCGCACTGTGGGAAGCGGTCCGAAATGTGCACTTAGACGTTGGAGAACCGGATCAGATTACTTGGAAGTTCACAAACAACGGGCACTACACGGCCTCCTCGGCTTACCATGCACAGTGCTGCGGGGTGCCGAGCACAAACTTCAATTCCTTGATTTGGAAAGCCTGGGCGCCGGGGAAATGCAAATTTCATGCTTGGCTCATCATTCAGAATAGAGTCTGGACTTCAGACCGGCTTGCGACCAGGGGATGGCAGAACAATGGTTGTTGCCCTCTTTGCCGCCGCGAGACTGAGACGGCATTGCACCTCGTTGCCACTTGTAGATACACCAAGAGGATCTGGCACCTCATCTCTGCATGGGTGGGCTATCAGCAGATGGACCCAACGGAATGGGAGGAAGCCTAG
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| Protein seq | MPTSQGGLGVLNLDKFTRALRLRWLWHEWKDQTKPWVGLETPCDEIDRNLFAASTNITIGDGNTVRFWESAWIGGRRPKDLMPLVYTISKNRGKSLRQGKEDDAWVQDLKLDSQSSITVDLVEQLVALWEAVRNVHLDVGEPDQITWKFTNNGHYTASSAYHAQCCGVPSTNFNSLIWKAWAPGKCKFHAWLIIQNRVWTSDRLATRGWQNNGCCPLCRRETETALHLVATCRYTKRIWHLISAWVGYQQMDPTEWEEA |
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| Function | Putative ribonuclease H protein At1g65750 [UniProtKB/Swiss-Prot:P0C2F6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g38042 | LOC_Os04g38042.1 | Chr04 | 22645052 | 22648129 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCGACCAGCCAAGGAGGATTGGGGGTCCTAAATCTGGACAAATTCACGAGGGCCTTGAGGTTGAGATGGCTGTGGCATGAATGGAAGGACCAGACCAAACCTTGGGTGGGGCTGGAGACGCCATGTGATGAAATAGATAGGAACCTCTTCGCCGCCTCAACAAACATAACAATAGGGGACGGAAACACGGTGCGATTTTGGGAGTCCGCGTGGATTGGTGGGCGAAGACCCAAAGACCTCATGCCGCTTGTCTATACGATCTCAAAAAACAGAGGAAAATCCCTTCGGCAAGGAAAGGAGGACGACGCCTGGGTGCAAGATTTGAAGCTTGATTCACAATCATCTATCACAGTCGATCTCGTCGAACAGCTAGTCGCACTGTGGGAAGCGGTCCGAAATGTGCACTTAGACGTTGGAGAACCGGATCAGATTACTTGGAAGTTCACAAACAACGGGCACTACACGGCCTCCTCGGCTTACCATGCACAGTGCTGCGGGGTGCCGAGCACAAACTTCAATTCCTTGATTTGGAAAGCCTGGGCGCCGGGGAAATGCAAATTTCATGCTTGGCTCATCATTCAGAATAGAGTCTGGACTTCAGACCGGCTTGCGACCAGGGGATGGCAGAACAATGGTTGTTGCCCTCTTTGCCGCCGCGAGACTGAGACGGCATTGCACCTCGTTGCCACTTGTAGATACACCAAGAGGATCTGGCACCTCATCTCTGCATGGGTGGGCTATCAGCAGATGGACCCAACGGAATGGGAGGAAGCCTAG
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| Protein seq | MPTSQGGLGVLNLDKFTRALRLRWLWHEWKDQTKPWVGLETPCDEIDRNLFAASTNITIGDGNTVRFWESAWIGGRRPKDLMPLVYTISKNRGKSLRQGKEDDAWVQDLKLDSQSSITVDLVEQLVALWEAVRNVHLDVGEPDQITWKFTNNGHYTASSAYHAQCCGVPSTNFNSLIWKAWAPGKCKFHAWLIIQNRVWTSDRLATRGWQNNGCCPLCRRETETALHLVATCRYTKRIWHLISAWVGYQQMDPTEWEEA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.321838 | 1.113228 | 0.398742 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g12970 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009430 | SBH | 0.135127 | 0.074211 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0353000 | RBH | 1.884197 | 0.02321 | 0.314832 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0350400 | RBH | 0.8650355 | 0.06821 | 0.311862 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009560 | SBH | 0.155197 | 0.730214 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008730 | SBH | 0.384366 | 0.861570 | 0.457926 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008760 | SBH | 0.604033 | 2.569614 | 0.338576 |
