Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g33400 | OGI:04063220 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:20236216-20238126 | ||||||||
| Gene Symbol | OsFbox207, Os_F0611 | ||||||||||
| DNA seq | AAATTAAGCAATTTATAGTCTAGATTCAGAGACAACATAACACTACAGTCTACAGGTCAGCAATCTTCAAAATGTAACCATAGAACTCAGTAGTCGTAGTGTAGATTCAGAAATTCAACTAAACATAGGAAAGAACAGAAGCCTACCAGTGGCATCACAAATACAGTACTCTTCAGCATGAAATGCATCCTACTAGGTCATAATCTAGATTCAGAAAGGCAACTAAACACGACAAAAAGAGCAGCCAACAGCATCATGAATACTGGATAGCAGTCATCTTCTGAGTGAAACCTCAAAGCTCAAACATTTAGAGCGAGTTCAGTAGTCAGCGATGATAGGTGTCGAAGGGATCAGGCAGAGTATTCGCAAGCTCTAAGCTCAAGTGCTCGAGATCATGGCTTTCCATGTCTTCAAACACGATCTCAGCTTCTGTGGAGGCCACGTGGCTTTGGTTGAGCAGAGCTTGCTGACCTGCAACGCATTGGGGGGTGCTGAACACCTTAGACTGAATCGTCATGAGCTGCAGCACCTGTGCTCTAGCAAGGAGAAAACATGCAAATTCAAGCATGTAGATGTTGTGAACTTTGCTTTCCAGTCGGACGCTGTTGAGGTGGTTCATGACACACCCAATGTGATCAAGCTTTTCGTGGTAGCTTGAGCCAACAGTGTCGGTGCTATCCTGAGTCAGATCGAACCTTGTATCAGAGGCCTGCACGGAATGATGAATCCAATGAATCTGTGTTCAGCTAAATTGAACAGGTAGTACCTACACAGACAGTGCAATGCAAGTATTGCAACAGCTCAAGCTCAACCAGTTACCTGAACGTGCAATGTCTCCACGAAAGGAAAGAAATTTAGCAAGTTCATCAGCTTGTCCATGTCATTCTTGCTCGAGAACTTTACACTGATAGCCAGAATCTTCACGCTCAGAAGCGGAGCACGCAAACCATTACAGACATCCTGATGCAATGCACAAGTAAAAATAACTCAGTGAGAGCAACTAAAGAGTAGAGTAGGAGAACGACGAGGATAAATGAAACAAGAAACCACCTTCTCAATAACCTCGTCGAAGAGGAGGAAATTGGACGAGCTGATCACGACATAGCCGAAAGCGGTGAGCTTTGGCGCGCCAGAGACGTTGATGGCCGCGGTGAGGCGCATGTCGCCGAGGAGGCGCTCGAGGCAGGGGGCGTCCTCCACGGTGAGCTCCTCGAGGTTCTTGTACTGCCACACGCCGAGCAGCACGAGGCTGCGGCAAGAGCGGACGCGGATGCTGCGGGGGCCCTCGACGTGCTTGAGCATGACGGTGCGCAGCGCGGGGCAGCCGGAGAGGACGCTCTGGAGGGCGGCCTCGGAGAGGTGGGTGCTCGACAGCGTGAGCTCCGTGAGGCGGGCCGCGGAGGCCCCCCGGTCGGAGACGCGGCACTCGCCGAGGGCGAGGGACTCGAGGGTGGCGCAGCCGAGGAGCGGGTCGGCGAGCGCGAGGTGGCACCACTCGGGCGCGCAGAGGAGGGCGACCTCCCTGGCGCGCTTCGCGGCGAGCTCGCGGAACCAGGCCTCCGCCGCGGCGACGCGGCCGCGGAAGGAGGTGCGGGAGAGGCGGAAGAGCGCGACGGGGCCCGGGTGGGAGGCGAGCACGCGGGTGACGGCGTCGGCGCGCGCGGTCCACGGCGCGATCGGGGACGAGGAGGCGGTGGTTCTGGTTCCTCCTCCCAGTCCCAGGGCGGCGAGGGCGGGGAGGTCGAGGTCGTCTAGGCGGAGCGGGGTGGCGGCCCACACGCCGCGGAAGCGGGTGGAGAGGGCGGCGGTGCGGGCCGCCTCGGCGGTGCCGAGGAGGGAGAAGATCACGGAGAGGAGGGCGTCCGGGAGCTCGCTGATGTAGTCCTCGCCGCCTCCGTCCGCTGCTGCCAT
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| CDS seq | ATGGCAGCAGCGGACGGAGGCGGCGAGGACTACATCAGCGAGCTCCCGGACGCCCTCCTCTCCGTGATCTTCTCCCTCCTCGGCACCGCCGAGGCGGCCCGCACCGCCGCCCTCTCCACCCGCTTCCGCGGCGTGTGGGCCGCCACCCCGCTCCGCCTAGACGACCTCGACCTCCCCGCCCTCGCCGCCCTGGGACTGGGAGGAGGAACCAGAACCACCGCCTCCTCGTCCCCGATCGCGCCGTGGACCGCGCGCGCCGACGCCGTCACCCGCGTGCTCGCCTCCCACCCGGGCCCCGTCGCGCTCTTCCGCCTCTCCCGCACCTCCTTCCGCGGCCGCGTCGCCGCGGCGGAGGCCTGGTTCCGCGAGCTCGCCGCGAAGCGCGCCAGGGAGGTCGCCCTCCTCTGCGCGCCCGAGTGGTGCCACCTCGCGCTCGCCGACCCGCTCCTCGGCTGCGCCACCCTCGAGTCCCTCGCCCTCGGCGAGTGCCGCGTCTCCGACCGGGGGGCCTCCGCGGCCCGCCTCACGGAGCTCACGCTGTCGAGCACCCACCTCTCCGAGGCCGCCCTCCAGAGCGTCCTCTCCGGCTGCCCCGCGCTGCGCACCGTCATGCTCAAGCACGTCGAGGGCCCCCGCAGCATCCGCGTCCGCTCTTGCCGCAGCCTCGTGCTGCTCGGCGTGTGGCAGTACAAGAACCTCGAGGAGCTCACCGTGGAGGACGCCCCCTGCCTCGAGCGCCTCCTCGGCGACATGCGCCTCACCGCGGCCATCAACGTCTCTGGCGCGCCAAAGCTCACCGCTTTCGGCTATGTCGTGATCAGCTCGTCCAATTTCCTCCTCTTCGACGAGGTTATTGAGAAGGATGTCTGTAATGGTTTGCGTGCTCCGCTTCTGAGCGTGAAGATTCTGGCTATCAGTGTAAAGTTCTCGAGCAAGAATGACATGGACAAGCTGATGAACTTGCTAAATTTCTTTCCTTTCGTGGAGACATTGCACGTTCAGGCCTCTGATACAAGGTTCGATCTGACTCAGGATAGCACCGACACTGTTGGCTCAAGCTACCACGAAAAGCTTGATCACATTGGGTGTGTCATGAACCACCTCAACAGCGTCCGACTGGAAAGCAAAGTTCACAACATCTACATGCTTGAATTTGCATGTTTTCTCCTTGCTAGAGCACAGGTGCTGCAGCTCATGACGATTCAGTCTAAGGTGTTCAGCACCCCCCAATGCGTTGCAGGTCAGCAAGCTCTGCTCAACCAAAGCCACGTGGCCTCCACAGAAGCTGAGATCGTGTTTGAAGACATGGAAAGCCATGATCTCGAGCACTTGAGCTTAGAGCTTGCGAATACTCTGCCTGATCCCTTCGACACCTATCATCGCTGA
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| Protein seq | MAAADGGGEDYISELPDALLSVIFSLLGTAEAARTAALSTRFRGVWAATPLRLDDLDLPALAALGLGGGTRTTASSSPIAPWTARADAVTRVLASHPGPVALFRLSRTSFRGRVAAAEAWFRELAAKRAREVALLCAPEWCHLALADPLLGCATLESLALGECRVSDRGASAARLTELTLSSTHLSEAALQSVLSGCPALRTVMLKHVEGPRSIRVRSCRSLVLLGVWQYKNLEELTVEDAPCLERLLGDMRLTAAINVSGAPKLTAFGYVVISSSNFLLFDEVIEKDVCNGLRAPLLSVKILAISVKFSSKNDMDKLMNLLNFFPFVETLHVQASDTRFDLTQDSTDTVGSSYHEKLDHIGCVMNHLNSVRLESKVHNIYMLEFACFLLARAQVLQLMTIQSKVFSTPQCVAGQQALLNQSHVASTEAEIVFEDMESHDLEHLSLELANTLPDPFDTYHR |
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| Function | F-box/FBD/LRR-repeat protein At1g13570 [UniProtKB/Swiss-Prot:Q9FZ70] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g33400 | LOC_Os04g33400.1 | Chr04 | 20236216 | 20238126 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCAGCAGCGGACGGAGGCGGCGAGGACTACATCAGCGAGCTCCCGGACGCCCTCCTCTCCGTGATCTTCTCCCTCCTCGGCACCGCCGAGGCGGCCCGCACCGCCGCCCTCTCCACCCGCTTCCGCGGCGTGTGGGCCGCCACCCCGCTCCGCCTAGACGACCTCGACCTCCCCGCCCTCGCCGCCCTGGGACTGGGAGGAGGAACCAGAACCACCGCCTCCTCGTCCCCGATCGCGCCGTGGACCGCGCGCGCCGACGCCGTCACCCGCGTGCTCGCCTCCCACCCGGGCCCCGTCGCGCTCTTCCGCCTCTCCCGCACCTCCTTCCGCGGCCGCGTCGCCGCGGCGGAGGCCTGGTTCCGCGAGCTCGCCGCGAAGCGCGCCAGGGAGGTCGCCCTCCTCTGCGCGCCCGAGTGGTGCCACCTCGCGCTCGCCGACCCGCTCCTCGGCTGCGCCACCCTCGAGTCCCTCGCCCTCGGCGAGTGCCGCGTCTCCGACCGGGGGGCCTCCGCGGCCCGCCTCACGGAGCTCACGCTGTCGAGCACCCACCTCTCCGAGGCCGCCCTCCAGAGCGTCCTCTCCGGCTGCCCCGCGCTGCGCACCGTCATGCTCAAGCACGTCGAGGGCCCCCGCAGCATCCGCGTCCGCTCTTGCCGCAGCCTCGTGCTGCTCGGCGTGTGGCAGTACAAGAACCTCGAGGAGCTCACCGTGGAGGACGCCCCCTGCCTCGAGCGCCTCCTCGGCGACATGCGCCTCACCGCGGCCATCAACGTCTCTGGCGCGCCAAAGCTCACCGCTTTCGGCTATGTCGTGATCAGCTCGTCCAATTTCCTCCTCTTCGACGAGGTTATTGAGAAGGATGTCTGTAATGGTTTGCGTGCTCCGCTTCTGAGCGTGAAGATTCTGGCTATCAGTGTAAAGTTCTCGAGCAAGAATGACATGGACAAGCTGATGAACTTGCTAAATTTCTTTCCTTTCGTGGAGACATTGCACGTTCAGGCCTCTGATACAAGGTTCGATCTGACTCAGGATAGCACCGACACTGTTGGCTCAAGCTACCACGAAAAGCTTGATCACATTGGGTGTGTCATGAACCACCTCAACAGCGTCCGACTGGAAAGCAAAGTTCACAACATCTACATGCTTGAATTTGCATGTTTTCTCCTTGCTAGAGCACAGGTGCTGCAGCTCATGACGATTCAGTCTAAGGTGTTCAGCACCCCCCAATGCGTTGCAGGTCAGCAAGCTCTGCTCAACCAAAGCCACGTGGCCTCCACAGAAGCTGAGATCGTGTTTGAAGACATGGAAAGCCATGATCTCGAGCACTTGAGCTTAGAGCTTGCGAATACTCTGCCTGATCCCTTCGACACCTATCATCGCTGA
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| Protein seq | MAAADGGGEDYISELPDALLSVIFSLLGTAEAARTAALSTRFRGVWAATPLRLDDLDLPALAALGLGGGTRTTASSSPIAPWTARADAVTRVLASHPGPVALFRLSRTSFRGRVAAAEAWFRELAAKRAREVALLCAPEWCHLALADPLLGCATLESLALGECRVSDRGASAARLTELTLSSTHLSEAALQSVLSGCPALRTVMLKHVEGPRSIRVRSCRSLVLLGVWQYKNLEELTVEDAPCLERLLGDMRLTAAINVSGAPKLTAFGYVVISSSNFLLFDEVIEKDVCNGLRAPLLSVKILAISVKFSSKNDMDKLMNLLNFFPFVETLHVQASDTRFDLTQDSTDTVGSSYHEKLDHIGCVMNHLNSVRLESKVHNIYMLEFACFLLARAQVLQLMTIQSKVFSTPQCVAGQQALLNQSHVASTEAEIVFEDMESHDLEHLSLELANTLPDPFDTYHR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.198647 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0409100 | RBH | 0.0 | 0.327231 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g33400 | RBH | 0.160407 | 0.368182 | 0.521278 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0409100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0012360 | RBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0013180 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0012890 | RBH | 0.000000 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0012510 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0012840 | RBH | 0.0 | 0.0 | 1.844950 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0319100 | RBH | 0.2314065 | 0.345604 | 1.5602065 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0011750 | RBH | 0.0 | 0.0 | 0.123574 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0316000 | RBH | 0.117021 | 0.125743 | 2.9388965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0012330 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0011950 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0011980 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0012530 | RBH | 0.0 | 0.0 | 0.253480 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0012760 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G011890 | RBH | 0.000000 | 0.0 | 0.214537 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0011910 | RBH | 0.000000 | 0.0 | 0.474556 |
