Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g27096 | OGI:04051600 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:16044638-16046020 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACCGGTAGCTGCCTAAATCGTTCACGTGCTCGGTGAAATCAAAAGCCCCGCTATGGATAGATTCCGAGACGCGGATCCGGACGGCCACCATTGACGCCGATACCCATTGAAATCCCCAGGTCATCGCCTCCGTGACAGCGTGGACGCCACCGATGCTGGAGTTGGACGATGTCAATGCCCAACATCGGCATGCTCTTCTTGCTCCCCAATAGTTATGTATTCCATATCCAACGAAACAAGCTTCTAGCGGCACCAATAACGAATTCAGGACACTGCAGACTCTGATCGATCCATTGGGAAGACGAATTTATGTATGCGCTCACGAAAAGGGGAGGGATGATGGGGAATTACAGCGAGGCACTAGGTGAGTAGGTGGTGCCACTGAGTGGAGTCAGTGGCGAATCGTGGCGCTGAGATGGAACAGGAAAAATGTTAGCCCCATCGTACCTATGCCTTGCCTAATCAACTGTTAGATTTTTTTTTTACCTCTTGGTAGCTAGCAATTGGTGGTATATCCTTATGAATGGTAAAAAGCTATGAAAAAAATCGCTCGCTCAGATCTGAGCATCTCGCTCCACGGAGTATCTGTTAGAAAATTAGCCCCGAAATCACCATTGAAACCAAACAAGAAAAAAACATTATAGAAAATCCAAACACGTTAATGATACCGAGGAATGATATTTAATAACGAGGTTAAATTATAAACTGATCCCCAGGACAGTAATTGAGAGGAAGAGCATTTCACTTAGCTTTATAACTGCTAGATTTAGTTCATGCTAAATGACGATTTTACCTCTCAATGCCTTTTTTTTTTTTTTTTGACAGTTACATCTCTTTACGTTTCTACTACTGTCAACTAAGATGGCAGTAGAAATAGATGGTAGCATCATAGCAGAAAGTAAACAGATGAAATGGAGGGAATAGAAATGATGGATCCAAAGTTACTTCTAATTAGATGAGTAGGACTTGTTACTTACTTGGTGATCCCCTCGAACACCATCCCAAAGGATCCACGTCCCAGGAAGCTCCCCCGACTCCAGGACCGGACCTTCCTCCTCCTCCTCCCAACATCATTACTCCCGTTCGTCGGGATGTAGAACATGGACTCGGTGGTCGTCCTCCTCGTCGTCTCATCATCCGTCGACTCCGACAGCGAAGACCAGCACGTGAAGAACTCACCGGACAGCAACACCGCCACCGCCTCCTCCTCCTCCTCCTCGTCGGCCGCCGGAGGAAATACGGCCATCGACGGTGCAGCAGCAGCAGCTAGATGCTGCTGATCTGGGGAGGCGATTTCCACGTCCACGCTTGGCGTGGTCTCCTCCTCCGGGAGGTGGGGAACAGCGGCCACGGACATGGCCAGCTGCAGCAGGGCAGCCAT
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| CDS seq | ATGGCTGCCCTGCTGCAGCTGGCCATGTCCGTGGCCGCTGTTCCCCACCTCCCGGAGGAGGAGACCACGCCAAGCGTGGACGTGGAAATCGCCTCCCCAGATCAGCAGCATCTAGCTGCTGCTGCTGCACCGTCGATGGCCGTATTTCCTCCGGCGGCCGACGAGGAGGAGGAGGAGGAGGCGGTGGCGGTGTTGCTGTCCGGTGAGTTCTTCACGTGCTGGTCTTCGCTGTCGGAGTCGACGGATGATGAGACGACGAGGAGGACGACCACCGAGTCCATGTTCTACATCCCGACGAACGGGAGTAATGATGTTGGGAGGAGGAGGAGGAAGGTCCGGTCCTGGAGTCGGGGGAGCTTCCTGGGACGTGGATCCTTTGGGATGGTGTTCGAGGGGATCACCAAAGTCTGCAGTGTCCTGAATTCGTTATTGGTGCCGCTAGAAGCTTGTTTCGTTGGATATGGAATACATAACTATTGGGGAGCAAGAAGAGCATGCCGATGTTGGGCATTGACATCGTCCAACTCCAGCATCGGTGGCGTCCACGCTGTCACGGAGGCGATGACCTGGGGATTTCAATGGGTATCGGCGTCAATGGTGGCCGTCCGGATCCGCGTCTCGGAATCTATCCATAGCGGGGCTTTTGATTTCACCGAGCACGTGAACGATTTAGGCAGCTACCGGTAG
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| Protein seq | MAALLQLAMSVAAVPHLPEEETTPSVDVEIASPDQQHLAAAAAPSMAVFPPAADEEEEEEAVAVLLSGEFFTCWSSLSESTDDETTRRTTTESMFYIPTNGSNDVGRRRRKVRSWSRGSFLGRGSFGMVFEGITKVCSVLNSLLVPLEACFVGYGIHNYWGARRACRCWALTSSNSSIGGVHAVTEAMTWGFQWVSASMVAVRIRVSESIHSGAFDFTEHVNDLGSYR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g27096 | LOC_Os04g27096.1 | Chr04 | 16044638 | 16046020 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCTGCCCTGCTGCAGCTGGCCATGTCCGTGGCCGCTGTTCCCCACCTCCCGGAGGAGGAGACCACGCCAAGCGTGGACGTGGAAATCGCCTCCCCAGATCAGCAGCATCTAGCTGCTGCTGCTGCACCGTCGATGGCCGTATTTCCTCCGGCGGCCGACGAGGAGGAGGAGGAGGAGGCGGTGGCGGTGTTGCTGTCCGGTGAGTTCTTCACGTGCTGGTCTTCGCTGTCGGAGTCGACGGATGATGAGACGACGAGGAGGACGACCACCGAGTCCATGTTCTACATCCCGACGAACGGGAGTAATGATGTTGGGAGGAGGAGGAGGAAGGTCCGGTCCTGGAGTCGGGGGAGCTTCCTGGGACGTGGATCCTTTGGGATGGTGTTCGAGGGGATCACCAAAGTCTGCAGTGTCCTGAATTCGTTATTGGTGCCGCTAGAAGCTTGTTTCGTTGGATATGGAATACATAACTATTGGGGAGCAAGAAGAGCATGCCGATGTTGGGCATTGACATCGTCCAACTCCAGCATCGGTGGCGTCCACGCTGTCACGGAGGCGATGACCTGGGGATTTCAATGGGTATCGGCGTCAATGGTGGCCGTCCGGATCCGCGTCTCGGAATCTATCCATAGCGGGGCTTTTGATTTCACCGAGCACGTGAACGATTTAGGCAGCTACCGGTAG
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| Protein seq | MAALLQLAMSVAAVPHLPEEETTPSVDVEIASPDQQHLAAAAAPSMAVFPPAADEEEEEEAVAVLLSGEFFTCWSSLSESTDDETTRRTTTESMFYIPTNGSNDVGRRRRKVRSWSRGSFLGRGSFGMVFEGITKVCSVLNSLLVPLEACFVGYGIHNYWGARRACRCWALTSSNSSIGGVHAVTEAMTWGFQWVSASMVAVRIRVSESIHSGAFDFTEHVNDLGSYR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.207167 | 0.294852 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0340100 | RBH | 0.000000 | 0.308017 | 1.145414 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0340100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008740 | RBH | 0.000000 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0009390 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0009170 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0008830 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0008990 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0253900 | RBH | 0.372196 | 6.9438775 | 0.4483495 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008130 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0250500 | RBH | 0.612563 | 2.756523 | 0.290317 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0008540 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008380 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008440 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0008760 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009070 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008190 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008270 | RBH | 0.0 | 0.0 | 0.0 |
