Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g25880 | OGI:04047560 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:15042562-15044709 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTACCCTTTAGCCACTAAAAAGCCGCCGGTTAGAACTTTACGCCTTCCATAGGGACGTTCGCGATTTACTATCCCCGACGTCGAACCGTTGGTTGTAAAGCCCAGCAAAACCAAACCTAAGGTCGAAGTGCTGCTCCTAGCACCCCACACCTCGATGCGTATAGTGGTCGAAGCTTCACTATTCCCTCGACCTCCACAGCACACCGCACAGTTAGCTTTCGGGCTCTGTGTGATCCTAGCCGCTCCGCCGCCACCCACGGTTGTCGGAGTAACACTTCCGCCCCACCAAACCTACACCAACCTCCTATTCCTCTAGCCGTTATGCTATCTGTTGACACCGGCTAGAGAAGATACCAAATCTAGTCGTTATACTACCCAACTCTAGCAATGACTAGCCAACAACTAAACCCTAGCCGATGCCTTCCGAGTTAAATTCCAGTCACCATCTAAATTCCATACCCACCTATCCACCATACTCTCAGCCACCTACTCTCTACCTACCAGAACCTATACATCAATTATAGAGCCGAGCTGATATGCTATCCTATTTCAGTATCGACTCGAGGAGAATTAAACCTTAGTTTCCATACAACCTAAACCTAGCTACCACCAACCAATACCAGTCACATACCCTCTTAACCAATACCATTATCCAAACTAGTTACTTCCCATCCTCCTACTAATCAAACCCACACATACAATATAAGCGACTGTAGTTGCTTAATCCCCTCTAGCCTCCAACCCTTTAGAACATACACATGAAATGTTAACCCAATAATCCCTATACCCTATAAAGGAGATATATATACCCCAAACCTAGCCTTTCTCGCCCTTCATCGCTTGCTATTTTATGGCTTTTATTGAATTTGGTTCTTCATTTCTTCAGTAGAGTCTATTATATTTGAGAAAATCCATAAAATGCCATCGACATCCACCTTGATCCCAGAAATGCCATCGACAAATGCAACTTCTTGAAAATGCCATTATTCAAGCTTATTTCTCCCAGAAATGCCATCACACCGTTAGTCCACACCGTTAGAACAAAACATTTTATGAGAATGACTAAATTGCCCTCACTCCAAATAATACTATCCCAATCCACAGGTAAAAAAAAACTACCGCTAATGCTTGATGCGTCACATGGCCGGCCTACCTCAAAGGCGTCGCCCTGACACGCGGCCAGCCAGAGGAAGTGGGAGGCTCACATCGGCGGTGGCGAATGTCTCGTCGTTGCTGTGGTTGGAGTCAGAGTCGGCGCTTCGCTCGCCATTGCTGGAGGAAGAGGAGGAGAGGCGGGTGAGCCCGACGGTGGTCATGCTCCAGACACGGGCGCCGCAGTAGGGGCAGCGGACGCGCGGCTCGAGCGGGGCGCGGTGGATGACGAGGAACGCGCACGTCCGCGACCGCATGAACCCACGATACACGCCCACGACGTCGTCGTACGCGGCGCCGGCAGCGGCCGCCGCGTGCTCGCAAAGTGGCCCGGCACGGCGGCGGCCGCCGCGCCGCACCAGAAGAAGAGCAGGTTCGCCATCGCCGGCCAACCTCCCCCAATGCGTCGATGCCTAGGACCGTCGTGCAGACGCCTACTGCCGATGCGCCATCGCCTGGGACTGCCGCGCCTGCGGCCGACACGCTGCCGCCGGCAGCCACCACCTCGCCGCCCGTCGCGTCAACGTCTGGGACCACCGCGCGGACGCCTGCTGCCAACGCACCGCTGCCTGGGAGCCCCGCACCGCCACCTAGGACTGATGCGTCGCCGCCTGCCACCTCCTCGCCACCCGTCGCATCGACGCCTGGGACCGCCGCGCTTGCAGCCGACACGGCGCCGCCTGGGACCGCCGCACCTGCAGCCAACGCGCCGCCGCCTAGAAGCCCCACGCCTGCTGCCGACGCGCCGCCTCCTGGGACCACCGTGTCGCCGCCTGGGAGCCACACGCCGCCACCTGGGAGCCTCGCGCCACCGCCTACCACCTCCTCGCCGCCCGTCGCGTCGACGCCTGGGACGACCGTGTCACCGCCTAGGAGCCACACGCCGCCGCCTGGGAGCCCCGCGCCACCGCCTACCACCTCCTCGCCGCCCGTCGCGTCAACGCCTGGAATCGACATGCCACCGCCTGGGAGCGCCGCCTTGCCGCTGTCGCTCAT
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| CDS seq | ATGAGCGACAGCGGCAAGGCGGCGCTCCCAGGCGGTGGCATGTCGATTCCAGGCGTTGACGCGACGGGCGGCGAGGAGGTGGTAGGCGGTGGCGCGGGGCTCCCAGGCGGCGGCGTGTGGCTCCTAGGCGGTGACACGGTCGTCCCAGGCGTCGACGCGACGGGCGGCGAGGAGGTGGTAGGCGGTGGCGCGAGGCTCCCAGGTGGCGGCGTGTGGCTCCCAGGCGGCGACACGGTGGTCCCAGGAGGCGGCGCGTCGGCAGCAGGCGTGGGGCTTCTAGGCGGCGGCGCGTTGGCTGCAGGTGCGGCGGTCCCAGGCGGCGCCGTGTCGGCTGCAAGCGCGGCGGTCCCAGGCGTCGATGCGACGGGTGGCGAGGAGGTGGCAGGCGGCGACGCATCAGTCCTAGGTGGCGGTGCGGGGCTCCCAGGCAGCGGTGCGTTGGCAGCAGGCGTCCGCGCGGTGGTCCCAGACGTTGACGCGACGGGCGGCGAGGTGGTGGCTGCCGGCGGCAGCGTGTCGGCCGCAGGCGCGGCAGTCCCAGGCGATGGCGCATCGGCACACGCGGCGGCCGCTGCCGGCGCCGCGTACGACGACGTCGTGGGCGTGTATCGTGGGTTCATGCGGTCGCGGACGTGCGCGTTCCTCGTCATCCACCGCGCCCCGCTCGAGCCGCGCGTCCGCTGCCCCTACTGCGGCGCCCGTGTCTGGAGCATGACCACCGTCGGGCTCACCCGCCTCTCCTCCTCTTCCTCCAGCAATGGCGAGCGAAGCGCCGACTCTGACTCCAACCACAGCAACGACGAGACATTCGCCACCGCCGATGTTTGGTGGGGCGGAAGTGTTACTCCGACAACCGTGGGTGGCGGCGGAGCGGCTAGGATCACACAGAGCCCGAAAGCTAACTGTGCGGTGTGCTGTGGAGGTCGAGGGAATAGTGAAGCTTCGACCACTATACGCATCGAGGTGTGGGGTGCTAGGAGCAGCACTTCGACCTTAGGTTTGGTTTTGCTGGGCTTTACAACCAACGGTTCGACGTCGGGGATAGTAAATCGCGAACGTCCCTATGGAAGGCGTAAAGTTCTAACCGGCGGCTTTTTAGTGGCTAAAGGGTAA
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| Protein seq | MSDSGKAALPGGGMSIPGVDATGGEEVVGGGAGLPGGGVWLLGGDTVVPGVDATGGEEVVGGGARLPGGGVWLPGGDTVVPGGGASAAGVGLLGGGALAAGAAVPGGAVSAASAAVPGVDATGGEEVAGGDASVLGGGAGLPGSGALAAGVRAVVPDVDATGGEVVAAGGSVSAAGAAVPGDGASAHAAAAAGAAYDDVVGVYRGFMRSRTCAFLVIHRAPLEPRVRCPYCGARVWSMTTVGLTRLSSSSSSNGERSADSDSNHSNDETFATADVWWGGSVTPTTVGGGGAARITQSPKANCAVCCGGRGNSEASTTIRIEVWGARSSTSTLGLVLLGFTTNGSTSGIVNRERPYGRRKVLTGGFLVAKG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g25880 | LOC_Os04g25880.1 | Chr04 | 15042562 | 15044709 | - | MSU_osa1r7 | ||
| CDS seq | ATGAGCGACAGCGGCAAGGCGGCGCTCCCAGGCGGTGGCATGTCGATTCCAGGCGTTGACGCGACGGGCGGCGAGGAGGTGGTAGGCGGTGGCGCGGGGCTCCCAGGCGGCGGCGTGTGGCTCCTAGGCGGTGACACGGTCGTCCCAGGCGTCGACGCGACGGGCGGCGAGGAGGTGGTAGGCGGTGGCGCGAGGCTCCCAGGTGGCGGCGTGTGGCTCCCAGGCGGCGACACGGTGGTCCCAGGAGGCGGCGCGTCGGCAGCAGGCGTGGGGCTTCTAGGCGGCGGCGCGTTGGCTGCAGGTGCGGCGGTCCCAGGCGGCGCCGTGTCGGCTGCAAGCGCGGCGGTCCCAGGCGTCGATGCGACGGGTGGCGAGGAGGTGGCAGGCGGCGACGCATCAGTCCTAGGTGGCGGTGCGGGGCTCCCAGGCAGCGGTGCGTTGGCAGCAGGCGTCCGCGCGGTGGTCCCAGACGTTGACGCGACGGGCGGCGAGGTGGTGGCTGCCGGCGGCAGCGTGTCGGCCGCAGGCGCGGCAGTCCCAGGCGATGGCGCATCGGCACACGCGGCGGCCGCTGCCGGCGCCGCGTACGACGACGTCGTGGGCGTGTATCGTGGGTTCATGCGGTCGCGGACGTGCGCGTTCCTCGTCATCCACCGCGCCCCGCTCGAGCCGCGCGTCCGCTGCCCCTACTGCGGCGCCCGTGTCTGGAGCATGACCACCGTCGGGCTCACCCGCCTCTCCTCCTCTTCCTCCAGCAATGGCGAGCGAAGCGCCGACTCTGACTCCAACCACAGCAACGACGAGACATTCGCCACCGCCGATGTTTGGTGGGGCGGAAGTGTTACTCCGACAACCGTGGGTGGCGGCGGAGCGGCTAGGATCACACAGAGCCCGAAAGCTAACTGTGCGGTGTGCTGTGGAGGTCGAGGGAATAGTGAAGCTTCGACCACTATACGCATCGAGGTGTGGGGTGCTAGGAGCAGCACTTCGACCTTAGGTTTGGTTTTGCTGGGCTTTACAACCAACGGTTCGACGTCGGGGATAGTAAATCGCGAACGTCCCTATGGAAGGCGTAAAGTTCTAACCGGCGGCTTTTTAGTGGCTAAAGGGTAA
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| Protein seq | MSDSGKAALPGGGMSIPGVDATGGEEVVGGGAGLPGGGVWLLGGDTVVPGVDATGGEEVVGGGARLPGGGVWLPGGDTVVPGGGASAAGVGLLGGGALAAGAAVPGGAVSAASAAVPGVDATGGEEVAGGDASVLGGGAGLPGSGALAAGVRAVVPDVDATGGEVVAAGGSVSAAGAAVPGDGASAHAAAAAGAAYDDVVGVYRGFMRSRTCAFLVIHRAPLEPRVRCPYCGARVWSMTTVGLTRLSSSSSSNGERSADSDSNHSNDETFATADVWWGGSVTPTTVGGGGAARITQSPKANCAVCCGGRGNSEASTTIRIEVWGARSSTSTLGLVLLGFTTNGSTSGIVNRERPYGRRKVLTGGFLVAKG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008190 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0008810 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0008370 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0008270 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0008410 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0242300 | RBH | 0 | 0 | 0.0119725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008020 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0238600 | RBH | 0 | 0 | 0.009999 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0008000 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0007710 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0008170 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0008030 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007680 | RBH | 0.222252 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007780 | RBH | 0.0 | 0.0 | 0.0 |
