Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g24998 | OGI:04045110 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:14402743-14404092 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGATAACATTGGTAACAAAGGCTATGGGAATGATGGATCCGATGACTCAAGAACCCAAGCCAATGGGAATGAGAAAAGCCTCAACGAAACCTCACCAGAGCTAATCCAAATTGTGGTTAACCAAACCAACATGTTGGCAACAGCCTTTCAACTATTACAGAATCGGAACAACCCAGCAGGGGCAACCAACGTTCAAGTACCTACAGTCCCGCAACAGTGCAAGTTATCAGAATTTCTCAAAACGGGGCCTCCAACCTTTGCCATGGCCGTCGATCCTATGGAAGCCAGTGATTGGTTGCGCACAGTCGAGAAGAAGCTAGGGTTGATTCAGTGCACCGACCAGGAGCGGGTTGGCTTCGCAACTCATCAGTTGGTTGGACCGGCTTCAGAGTGGTGGGATAGCTACGAAGCATCACGGCCAGAAGGACATACCATCACCTGGAACGAGTTTTCATCTGTATTCAAGAGATCACATGTTCCCACAGGAATGATCACACTAAGAAAACGAGAGTTTCGCTACCTGAAGCAAGGAGATTTGACCGTCACAGAGTACCTGCATGAGTTCTATCGTTTGGCTCACTATGCACCAGAAGATGTGGAAACGGATGAAGACAAACAAGAGAAGTTTCTCCAGGGGTTAAAAGATGAGCTTGCAGTGCAACTACTTCTAGAGGATTATGAAGATTTTGAGAAACTTGTGGACAAAGCCATGCAACTCGAAAGTGAGCATAATCGGATGACGAACTGCAAGAGAAGGATTGTCAACATCCCAGTATTTCCAGGTAGTAACCAAAGACAGCGCACTGAGCCACTTCAGATCACCGGATCTCCTGTTGTGCATCAAGAGTTCCTGCCCCAAGAAGATGAATGCAATGCAGACAACAACACTAGCAATACTAATAATGATGATACCACCAACAACCAAGGTTCTGGCCCCATTAGTGACCACTCGAATAAAGCGTGCAATGTCAGTAGCATTCACCAAGATGTCAACGATAGTATCAATGTTGGAACCCAGAATGACAACCTTAGCAATTTTGACACTGAGAAAGACTCCAATGGTGATAGCAACTATGGTACCACTGATGCCAATGTTAGCAAGGATTTCCAACCACCAATTCCAACTCCAAGTCACAATGATCATCCCCAGATGGACAGCTCAGCAAAGAAGACGTTGATTTGTTACAACTGCAAAGAACCAGGTCATTTCTCTAGAGATTGTCCACAGCCGAAGCGTAACCTGCGCCATCACTCCGGCCATTATGCAAGAAGAAGACAGGTCACTCGCCTTGTGGTCACTGGAGCAAACGCCGTACCTGTGAGGCCTCATGTTAATTCTAACCCATAG
More
|
||||||||||
| CDS seq | ATGGATAACATTGGTAACAAAGGCTATGGGAATGATGGATCCGATGACTCAAGAACCCAAGCCAATGGGAATGAGAAAAGCCTCAACGAAACCTCACCAGAGCTAATCCAAATTGTGGTTAACCAAACCAACATGTTGGCAACAGCCTTTCAACTATTACAGAATCGGAACAACCCAGCAGGGGCAACCAACGTTCAAGTACCTACAGTCCCGCAACAGTGCAAGTTATCAGAATTTCTCAAAACGGGGCCTCCAACCTTTGCCATGGCCGTCGATCCTATGGAAGCCAGTGATTGGTTGCGCACAGTCGAGAAGAAGCTAGGGTTGATTCAGTGCACCGACCAGGAGCGGGTTGGCTTCGCAACTCATCAGTTGGTTGGACCGGCTTCAGAGTGGTGGGATAGCTACGAAGCATCACGGCCAGAAGGACATACCATCACCTGGAACGAGTTTTCATCTGTATTCAAGAGATCACATGTTCCCACAGGAATGATCACACTAAGAAAACGAGAGTTTCGCTACCTGAAGCAAGGAGATTTGACCGTCACAGAGTACCTGCATGAGTTCTATCGTTTGGCTCACTATGCACCAGAAGATGTGGAAACGGATGAAGACAAACAAGAGAAGTTTCTCCAGGGGTTAAAAGATGAGCTTGCAGTGCAACTACTTCTAGAGGATTATGAAGATTTTGAGAAACTTGTGGACAAAGCCATGCAACTCGAAAGTGAGCATAATCGGATGACGAACTGCAAGAGAAGGATTGTCAACATCCCAGTATTTCCAGGTAGTAACCAAAGACAGCGCACTGAGCCACTTCAGATCACCGGATCTCCTGTTGTGCATCAAGAGTTCCTGCCCCAAGAAGATGAATGCAATGCAGACAACAACACTAGCAATACTAATAATGATGATACCACCAACAACCAAGGTTCTGGCCCCATTAGTGACCACTCGAATAAAGCGTGCAATGTCAGTAGCATTCACCAAGATGTCAACGATAGTATCAATGTTGGAACCCAGAATGACAACCTTAGCAATTTTGACACTGAGAAAGACTCCAATGGTGATAGCAACTATGGTACCACTGATGCCAATGTTAGCAAGGATTTCCAACCACCAATTCCAACTCCAAGTCACAATGATCATCCCCAGATGGACAGCTCAGCAAAGAAGACGTTGATTTGTTACAACTGCAAAGAACCAGGTCATTTCTCTAGAGATTGTCCACAGCCGAAGCGTAACCTGCGCCATCACTCCGGCCATTATGCAAGAAGAAGACAGGTCACTCGCCTTGTGGTCACTGGAGCAAACGCCGTACCTGTGAGGCCTCATGTTAATTCTAACCCATAG
More
|
||||||||||
| Protein seq | MDNIGNKGYGNDGSDDSRTQANGNEKSLNETSPELIQIVVNQTNMLATAFQLLQNRNNPAGATNVQVPTVPQQCKLSEFLKTGPPTFAMAVDPMEASDWLRTVEKKLGLIQCTDQERVGFATHQLVGPASEWWDSYEASRPEGHTITWNEFSSVFKRSHVPTGMITLRKREFRYLKQGDLTVTEYLHEFYRLAHYAPEDVETDEDKQEKFLQGLKDELAVQLLLEDYEDFEKLVDKAMQLESEHNRMTNCKRRIVNIPVFPGSNQRQRTEPLQITGSPVVHQEFLPQEDECNADNNTSNTNNDDTTNNQGSGPISDHSNKACNVSSIHQDVNDSINVGTQNDNLSNFDTEKDSNGDSNYGTTDANVSKDFQPPIPTPSHNDHPQMDSSAKKTLICYNCKEPGHFSRDCPQPKRNLRHHSGHYARRRQVTRLVVTGANAVPVRPHVNSNP |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g24998 | LOC_Os04g24998.1 | Chr04 | 14402743 | 14404092 | + | MSU_osa1r7 | ||
| CDS seq | ATGGATAACATTGGTAACAAAGGCTATGGGAATGATGGATCCGATGACTCAAGAACCCAAGCCAATGGGAATGAGAAAAGCCTCAACGAAACCTCACCAGAGCTAATCCAAATTGTGGTTAACCAAACCAACATGTTGGCAACAGCCTTTCAACTATTACAGAATCGGAACAACCCAGCAGGGGCAACCAACGTTCAAGTACCTACAGTCCCGCAACAGTGCAAGTTATCAGAATTTCTCAAAACGGGGCCTCCAACCTTTGCCATGGCCGTCGATCCTATGGAAGCCAGTGATTGGTTGCGCACAGTCGAGAAGAAGCTAGGGTTGATTCAGTGCACCGACCAGGAGCGGGTTGGCTTCGCAACTCATCAGTTGGTTGGACCGGCTTCAGAGTGGTGGGATAGCTACGAAGCATCACGGCCAGAAGGACATACCATCACCTGGAACGAGTTTTCATCTGTATTCAAGAGATCACATGTTCCCACAGGAATGATCACACTAAGAAAACGAGAGTTTCGCTACCTGAAGCAAGGAGATTTGACCGTCACAGAGTACCTGCATGAGTTCTATCGTTTGGCTCACTATGCACCAGAAGATGTGGAAACGGATGAAGACAAACAAGAGAAGTTTCTCCAGGGGTTAAAAGATGAGCTTGCAGTGCAACTACTTCTAGAGGATTATGAAGATTTTGAGAAACTTGTGGACAAAGCCATGCAACTCGAAAGTGAGCATAATCGGATGACGAACTGCAAGAGAAGGATTGTCAACATCCCAGTATTTCCAGGTAGTAACCAAAGACAGCGCACTGAGCCACTTCAGATCACCGGATCTCCTGTTGTGCATCAAGAGTTCCTGCCCCAAGAAGATGAATGCAATGCAGACAACAACACTAGCAATACTAATAATGATGATACCACCAACAACCAAGGTTCTGGCCCCATTAGTGACCACTCGAATAAAGCGTGCAATGTCAGTAGCATTCACCAAGATGTCAACGATAGTATCAATGTTGGAACCCAGAATGACAACCTTAGCAATTTTGACACTGAGAAAGACTCCAATGGTGATAGCAACTATGGTACCACTGATGCCAATGTTAGCAAGGATTTCCAACCACCAATTCCAACTCCAAGTCACAATGATCATCCCCAGATGGACAGCTCAGCAAAGAAGACGTTGATTTGTTACAACTGCAAAGAACCAGGTCATTTCTCTAGAGATTGTCCACAGCCGAAGCGTAACCTGCGCCATCACTCCGGCCATTATGCAAGAAGAAGACAGGTCACTCGCCTTGTGGTCACTGGAGCAAACGCCGTACCTGTGAGGCCTCATGTTAATTCTAACCCATAG
More
|
|||||||
| Protein seq | MDNIGNKGYGNDGSDDSRTQANGNEKSLNETSPELIQIVVNQTNMLATAFQLLQNRNNPAGATNVQVPTVPQQCKLSEFLKTGPPTFAMAVDPMEASDWLRTVEKKLGLIQCTDQERVGFATHQLVGPASEWWDSYEASRPEGHTITWNEFSSVFKRSHVPTGMITLRKREFRYLKQGDLTVTEYLHEFYRLAHYAPEDVETDEDKQEKFLQGLKDELAVQLLLEDYEDFEKLVDKAMQLESEHNRMTNCKRRIVNIPVFPGSNQRQRTEPLQITGSPVVHQEFLPQEDECNADNNTSNTNNDDTTNNQGSGPISDHSNKACNVSSIHQDVNDSINVGTQNDNLSNFDTEKDSNGDSNYGTTDANVSKDFQPPIPTPSHNDHPQMDSSAKKTLICYNCKEPGHFSRDCPQPKRNLRHHSGHYARRRQVTRLVVTGANAVPVRPHVNSNP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g17450 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0217700 | RBH | 0.033767 | 0.15651 | 0.06548 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0313500 | RBH | 0 | 0.0028415 | 0.0123135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
