Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os04g22160 OGI:04041440 | 2/16 Nipponbare | IRGSP 1.0 | MSU Chr04:12553250-12556265
Gene Symbol -
DNA seq

ATGTTGGGTGAAGCATGGAGAGCAAGAATCAGGAAGTGGAGCAGCAGCAGACAGAAGTGTGTGCATAATCAGGAAGATGAAAATGAGCATGACATGTTTATACCTTCTCCATTGGGCGGTGAAATGGTTGATGTGGATCACGATCTGCTGCAAGACATGTTACGTGATGTTGAGGACCTAGCCCAGAATGAGAGAGATGGAATGAAATTCAGCAGGTTGGTAAGTGATTCCGAGACGCCTTTGTACGCTGGATGCAAAGCAAAACACACTAAGTTGTCAGTTACCTTGAACCTAATGAAGGTAAAGGCAAGTAGTGGATGGACAGACAAGAGTTTCACAGATCTTTTAGGAATTTTGAAGGCTATGCATCCTGTTGAGAACACATTGCCCGAGACGACATACGAAGCAAAGCAGGTTCTGTGTCCACTGGGGTTAGAGGTCCGTAGAATTCACGCTTGTCCCAACGACTGCATATTGTACCACAAGCAATATGCGGACTTGGATGCTTGTCCTGTCTGCAAGGTTTCACGATACAAGCGAAAGAAAAGTGCTGACGAAGGAAATAAGTCAAAGAGGGGTGGTCCGGCAAAGGTTGTGTGGTATCTACCTATCATTGATCGTTTCAAAAGAATCTTTGCCAACCCGAACGAAGCGAAGTTAGTACGTTGGCACGCCACGGAAAGAAGGAATGATGGTATGCTTAGACACCCAGCGGATTCGATTGAATGGAGGAATATAGATCGAAAACACAAAGACTTTGCTGCCGACCCTAGAAACATGAGGATATGTCTTTGTACGGATGGCATGAATCCTTTCGGTGACATGAGTAGTACTCACAGCATTTGGCCAGTTCTTATTGCGAACTATAACCTCCCGCTATGGTTATGCTTTAAACAGAAATATATTATGTTGTGCTTGTTAATCTAAGGTCCAAGGCAACCCGGCAATGATATCGATGTATTCCTGGAGCCTGTTATCGACGATCTGGAGATTCTTTGGAAAGAAAGTGTGGAAACTTGGGATGCATATGGTCAGGAGAACTTCAAGCTAAGAGTTCTATTGTTCTGCACCATTAATGACTACCCTGCACTCGGTAATCTTTCCGGACAAACTATAAAAGGAAAGAAGGCATGCTCCGATTGCAAGGAACATCCACGAAACCGGTGGCTGAAGAAATCACGAAAGATGGTATACATGGGTCACCGGAGGTTGCTCCCGGTACGTCACACATTTAGAAGAAAGAAGAAAATTTTTAATGGTAAGAGAGAACTTCAGCCTGCTCCCAAAGATTTGTCCGGAGATGAGGTCCACAATATGGTCAAGGACATAAGCAATGAGTTTGGGAAGAAAAGAAAACGTAGCAAGACAAAGGAGAAGGGTATGTGGAAGAAAAAAATCCATATTTTGGCGGCTACCTTACTGGAAAGATCTTGATGTCCGTCATTGCATTGATCTCATGCATGTAGAAAAGAATGTGTGTGAGAGTTTGGTTGGCCTGATGTTGAATATTCCCGGGAAGACAAAGGACGGGTTGAACGCGCGCCTTGATCTACAGGACATGAATATTCGCAGCGAACTCCAGCCCAAACGAGATGCAGAGATAGGTAAAGTGTACCTCCCTCCAGCCTGCCACACACTGTCGGAGGATGAGAAGATCGCAATGTTATCATGCTTGAAGGATATTAAAGTTCCATCGGGCTATTCAGCGAGGATAAGTAAGTATGTTAAATTGGACGATCTAAAACTTGTTGGAATGAAGTCTCACGATTGCCACGTGCTAATCACACAAATCTTGCCAGTTGCTATCAGAGGCATTCTACCACCGAAAGTGCGTCACACGATCCAACGTCTGTGCGCCTTCTTCAATGCAATTGGACAGAAGGTTATAGATCCTGAAGATCTAGATGGGCTGCAGACCGATATTGTGAATACCCTCTGTCACCTGGAGATGTTTTTCCCACTGTCTTTCTTTGATATAATGGTTCATCTCTCTGTTCATCTGGTGAAGCAAACAAAACTATGTGGTCCGGCTTTTCTAAGGGAAATGTGGCCGTTTGAAAGGTACATGGGAGTTCTAAAGTCGTACATTCGTAGCAGAGCTAAACCCGAGGGGAGCATCATTAAAGGTTACACGACCGAGGAGGCTATTGAGTTCTGTGTCAATTACATGTCCGATGCCGATCCTATCGGAGTTCCAGCGTCTCGTCACGAGGGAAGGTTGTCAGGTGTTGGCACAATTGGAAGGAAAAGAATTAGGCCCGATCAAGCGTCGTACGTGCAGGCTCATTATGCTGTGCTCCAACATATGGCAGAAGTTGTCCCATACTTTGAGGAGCACTTAGCGAAAATCCGAGATGAGAACTTGGGGCGATCTGATGCATGGATTAACAGAGAACATAATTCTCGGTTCAACGAATGGTTCAAGAATCGTGTGACAATGTCCACGGATGTCCCAAATGAGACAGTACAATTGTTGGGGATGGGACCGTCTTGGACCATAGACACATGGCAAGGATACGATATAAATGGATACACATTTTACACCGTCAAACAAGATGACAAAAGCACAGTGCAAAACAGCGGCGTCCGTATAGATGCATTCCAGGATCAAGTTGGGTCAAACACATACTACGGCCGCATTGAGGAGATCTGGGAGCTAAACTACGTCAAGTTCAAGGTTCCTTTGTTCCACTGCCGTTGGGTGAATCTACGCACTAGTGTCAAAGCCGACAAGGAAGGTTTCACTTTAGTAGATCTATCTAAGGTGGGATACGCCGATGAACCATTTGTACTTGCGAAACAGGTCGAGCAGATATTCTACACAAAAGACCCTTCAAACAAGAAGATGCACATCGTGAGGGATGGAAAGCGCCAAATTGTAGGAGTTGACAACGTCGTCGATGAAGAAGAATACAACCATAATCTTCATGTAAGACCTCACATTGACCTTGACGATGATCCCCAAGAGTCTGTGGCATATGCTCGTTCAGATCATACCGAAGGCATAACCTTATGA

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CDS seq

ATGTTGGGTGAAGCATGGAGAGCAAGAATCAGGAAGTGGAGCAGCAGCAGACAGAAGTGTGTGCATAATCAGGAAGATGAAAATGAGCATGACATGTTTATACCTTCTCCATTGGGCGGTGAAATGGTTGATGTGGATCACGATCTGCTGCAAGACATGTTACGTGATGTTGAGGACCTAGCCCAGAATGAGAGAGATGGAATGAAATTCAGCAGGTTGGTAAGTGATTCCGAGACGCCTTTGTACGCTGGATGCAAAGCAAAACACACTAAGTTGTCAGTTACCTTGAACCTAATGAAGGTAAAGGCAAGTAGTGGATGGACAGACAAGAGTTTCACAGATCTTTTAGGAATTTTGAAGGCTATGCATCCTGTTGAGAACACATTGCCCGAGACGACATACGAAGCAAAGCAGGTTCTGTGTCCACTGGGGTTAGAGGTCCGTAGAATTCACGCTTGTCCCAACGACTGCATATTGTACCACAAGCAATATGCGGACTTGGATGCTTGTCCTGTCTGCAAGGTTTCACGATACAAGCGAAAGAAAAGTGCTGACGAAGGAAATAAGTCAAAGAGGGGTGGTCCGGCAAAGGTTGTGTGGTATCTACCTATCATTGATCGTTTCAAAAGAATCTTTGCCAACCCGAACGAAGCGAAGTTAGTACGTTGGCACGCCACGGAAAGAAGGAATGATGGTCCAAGGCAACCCGGCAATGATATCGATGTATTCCTGGAGCCTGTTATCGACGATCTGGAGATTCTTTGGAAAGAAAGTGTGGAAACTTGGGATGCATATGGTCAGGAGAACTTCAAGCTAAGAGTTCTATTGTTCTGCACCATTAATGACTACCCTGCACTCGGTAATCTTTCCGGACAAACTATAAAAGGAAAGAAGGCATGCTCCGATTGCAAGGAACATCCACGAAACCGGTGGCTGAAGAAATCACGAAAGATGGTATACATGGGTCACCGGAGGTTGCTCCCGGTACGTCACACATTTAGAAGAAAGAAGAAAATTTTTAATGGTAAGAGAGAACTTCAGCCTGCTCCCAAAGATTTGTCCGGAGATGAGGTCCACAATATGGTCAAGGACATAAGCAATGAGTTTGGGAAGAAAAGAAAACGTAGCAAGACAAAGGAGAAGGAAAAGAATGTGTGTGAGAGTTTGGTTGGCCTGATGTTGAATATTCCCGGGAAGACAAAGGACGGGTTGAACGCGCGCCTTGATCTACAGGACATGAATATTCGCAGCGAACTCCAGCCCAAACGAGATGCAGAGATAGGTAAAGTGTACCTCCCTCCAGCCTGCCACACACTGTCGGAGGATGAGAAGATCGCAATGTTATCATGCTTGAAGGATATTAAAGTTCCATCGGGCTATTCAGCGAGGATAAGTAAGTATGTTAAATTGGACGATCTAAAACTTGTTGGAATGAAGTCTCACGATTGCCACGTGCTAATCACACAAATCTTGCCAGTTGCTATCAGAGGCATTCTACCACCGAAAGTGCGTCACACGATCCAACGTCTGTGCGCCTTCTTCAATGCAATTGGACAGAAGGTTATAGATCCTGAAGATCTAGATGGGCTGCAGACCGATATTGTGAATACCCTCTGTCACCTGGAGATGTTTTTCCCACTGTCTTTCTTTGATATAATGGTTCATCTCTCTGTTCATCTGGTGAAGCAAACAAAACTATGTGGTCCGGCTTTTCTAAGGGAAATGTGGCCGTTTGAAAGGTACATGGGAGTTCTAAAGTCGTACATTCGTAGCAGAGCTAAACCCGAGGGGAGCATCATTAAAGGTTACACGACCGAGGAGGCTATTGAGTTCTGTGTCAATTACATGTCCGATGCCGATCCTATCGGAGTTCCAGCGTCTCGTCACGAGGGAAGGTTGTCAGGTGTTGGCACAATTGGAAGGAAAAGAATTAGGCCCGATCAAGCGTCGTACGTGCAGGCTCATTATGCTGTGCTCCAACATATGGCAGAAGTTGTCCCATACTTTGAGGAGCACTTAGCGAAAATCCGAGATGAGAACTTGGGGCGATCTGATGCATGGATTAACAGAGAACATAATTCTCGGTTCAACGAATGGTTCAAGAATCGTGTGACAATGTCCACGGATGTCCCAAATGAGACAGTACAATTGTTGGGGATGGGACCGTCTTGGACCATAGACACATGGCAAGGATACGATATAAATGGATACACATTTTACACCGTCAAACAAGATGACAAAAGCACAGTGCAAAACAGCGGCGTCCGTATAGATGCATTCCAGGATCAAGTTGGGTCAAACACATACTACGGCCGCATTGAGGAGATCTGGGAGCTAAACTACGTCAAGTTCAAGGTTCCTTTGTTCCACTGCCGTTGGGTGAATCTACGCACTAGTGTCAAAGCCGACAAGGAAGGTTTCACTTTAGTAGATCTATCTAAGGTGGGATACGCCGATGAACCATTTGTACTTGCGAAACAGGTCGAGCAGATATTCTACACAAAAGACCCTTCAAACAAGAAGATGCACATCGTGAGGGATGGAAAGCGCCAAATTGTAGGAGTTGACAACGTCGTCGATGAAGAAGAATACAACCATAATCTTCATGTAAGACCTCACATTGACCTTGACGATGATCCCCAAGAGTCTGTGGCATATGCTCGTTCAGATCATACCGAAGGCATAACCTTATGA

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Protein seq

MLGEAWRARIRKWSSSRQKCVHNQEDENEHDMFIPSPLGGEMVDVDHDLLQDMLRDVEDLAQNERDGMKFSRLVSDSETPLYAGCKAKHTKLSVTLNLMKVKASSGWTDKSFTDLLGILKAMHPVENTLPETTYEAKQVLCPLGLEVRRIHACPNDCILYHKQYADLDACPVCKVSRYKRKKSADEGNKSKRGGPAKVVWYLPIIDRFKRIFANPNEAKLVRWHATERRNDGPRQPGNDIDVFLEPVIDDLEILWKESVETWDAYGQENFKLRVLLFCTINDYPALGNLSGQTIKGKKACSDCKEHPRNRWLKKSRKMVYMGHRRLLPVRHTFRRKKKIFNGKRELQPAPKDLSGDEVHNMVKDISNEFGKKRKRSKTKEKEKNVCESLVGLMLNIPGKTKDGLNARLDLQDMNIRSELQPKRDAEIGKVYLPPACHTLSEDEKIAMLSCLKDIKVPSGYSARISKYVKLDDLKLVGMKSHDCHVLITQILPVAIRGILPPKVRHTIQRLCAFFNAIGQKVIDPEDLDGLQTDIVNTLCHLEMFFPLSFFDIMVHLSVHLVKQTKLCGPAFLREMWPFERYMGVLKSYIRSRAKPEGSIIKGYTTEEAIEFCVNYMSDADPIGVPASRHEGRLSGVGTIGRKRIRPDQASYVQAHYAVLQHMAEVVPYFEEHLAKIRDENLGRSDAWINREHNSRFNEWFKNRVTMSTDVPNETVQLLGMGPSWTIDTWQGYDINGYTFYTVKQDDKSTVQNSGVRIDAFQDQVGSNTYYGRIEEIWELNYVKFKVPLFHCRWVNLRTSVKADKEGFTLVDLSKVGYADEPFVLAKQVEQIFYTKDPSNKKMHIVRDGKRQIVGVDNVVDEEEYNHNLHVRPHIDLDDDPQESVAYARSDHTEGITL

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os04g22160 LOC_Os04g22160.1 Chr04 12553250 12556265 + MSU_osa1r7
CDS seq

ATGTTGGGTGAAGCATGGAGAGCAAGAATCAGGAAGTGGAGCAGCAGCAGACAGAAGTGTGTGCATAATCAGGAAGATGAAAATGAGCATGACATGTTTATACCTTCTCCATTGGGCGGTGAAATGGTTGATGTGGATCACGATCTGCTGCAAGACATGTTACGTGATGTTGAGGACCTAGCCCAGAATGAGAGAGATGGAATGAAATTCAGCAGGTTGGTAAGTGATTCCGAGACGCCTTTGTACGCTGGATGCAAAGCAAAACACACTAAGTTGTCAGTTACCTTGAACCTAATGAAGGTAAAGGCAAGTAGTGGATGGACAGACAAGAGTTTCACAGATCTTTTAGGAATTTTGAAGGCTATGCATCCTGTTGAGAACACATTGCCCGAGACGACATACGAAGCAAAGCAGGTTCTGTGTCCACTGGGGTTAGAGGTCCGTAGAATTCACGCTTGTCCCAACGACTGCATATTGTACCACAAGCAATATGCGGACTTGGATGCTTGTCCTGTCTGCAAGGTTTCACGATACAAGCGAAAGAAAAGTGCTGACGAAGGAAATAAGTCAAAGAGGGGTGGTCCGGCAAAGGTTGTGTGGTATCTACCTATCATTGATCGTTTCAAAAGAATCTTTGCCAACCCGAACGAAGCGAAGTTAGTACGTTGGCACGCCACGGAAAGAAGGAATGATGGTCCAAGGCAACCCGGCAATGATATCGATGTATTCCTGGAGCCTGTTATCGACGATCTGGAGATTCTTTGGAAAGAAAGTGTGGAAACTTGGGATGCATATGGTCAGGAGAACTTCAAGCTAAGAGTTCTATTGTTCTGCACCATTAATGACTACCCTGCACTCGGTAATCTTTCCGGACAAACTATAAAAGGAAAGAAGGCATGCTCCGATTGCAAGGAACATCCACGAAACCGGTGGCTGAAGAAATCACGAAAGATGGTATACATGGGTCACCGGAGGTTGCTCCCGGTACGTCACACATTTAGAAGAAAGAAGAAAATTTTTAATGGTAAGAGAGAACTTCAGCCTGCTCCCAAAGATTTGTCCGGAGATGAGGTCCACAATATGGTCAAGGACATAAGCAATGAGTTTGGGAAGAAAAGAAAACGTAGCAAGACAAAGGAGAAGGAAAAGAATGTGTGTGAGAGTTTGGTTGGCCTGATGTTGAATATTCCCGGGAAGACAAAGGACGGGTTGAACGCGCGCCTTGATCTACAGGACATGAATATTCGCAGCGAACTCCAGCCCAAACGAGATGCAGAGATAGGTAAAGTGTACCTCCCTCCAGCCTGCCACACACTGTCGGAGGATGAGAAGATCGCAATGTTATCATGCTTGAAGGATATTAAAGTTCCATCGGGCTATTCAGCGAGGATAAGTAAGTATGTTAAATTGGACGATCTAAAACTTGTTGGAATGAAGTCTCACGATTGCCACGTGCTAATCACACAAATCTTGCCAGTTGCTATCAGAGGCATTCTACCACCGAAAGTGCGTCACACGATCCAACGTCTGTGCGCCTTCTTCAATGCAATTGGACAGAAGGTTATAGATCCTGAAGATCTAGATGGGCTGCAGACCGATATTGTGAATACCCTCTGTCACCTGGAGATGTTTTTCCCACTGTCTTTCTTTGATATAATGGTTCATCTCTCTGTTCATCTGGTGAAGCAAACAAAACTATGTGGTCCGGCTTTTCTAAGGGAAATGTGGCCGTTTGAAAGGTACATGGGAGTTCTAAAGTCGTACATTCGTAGCAGAGCTAAACCCGAGGGGAGCATCATTAAAGGTTACACGACCGAGGAGGCTATTGAGTTCTGTGTCAATTACATGTCCGATGCCGATCCTATCGGAGTTCCAGCGTCTCGTCACGAGGGAAGGTTGTCAGGTGTTGGCACAATTGGAAGGAAAAGAATTAGGCCCGATCAAGCGTCGTACGTGCAGGCTCATTATGCTGTGCTCCAACATATGGCAGAAGTTGTCCCATACTTTGAGGAGCACTTAGCGAAAATCCGAGATGAGAACTTGGGGCGATCTGATGCATGGATTAACAGAGAACATAATTCTCGGTTCAACGAATGGTTCAAGAATCGTGTGACAATGTCCACGGATGTCCCAAATGAGACAGTACAATTGTTGGGGATGGGACCGTCTTGGACCATAGACACATGGCAAGGATACGATATAAATGGATACACATTTTACACCGTCAAACAAGATGACAAAAGCACAGTGCAAAACAGCGGCGTCCGTATAGATGCATTCCAGGATCAAGTTGGGTCAAACACATACTACGGCCGCATTGAGGAGATCTGGGAGCTAAACTACGTCAAGTTCAAGGTTCCTTTGTTCCACTGCCGTTGGGTGAATCTACGCACTAGTGTCAAAGCCGACAAGGAAGGTTTCACTTTAGTAGATCTATCTAAGGTGGGATACGCCGATGAACCATTTGTACTTGCGAAACAGGTCGAGCAGATATTCTACACAAAAGACCCTTCAAACAAGAAGATGCACATCGTGAGGGATGGAAAGCGCCAAATTGTAGGAGTTGACAACGTCGTCGATGAAGAAGAATACAACCATAATCTTCATGTAAGACCTCACATTGACCTTGACGATGATCCCCAAGAGTCTGTGGCATATGCTCGTTCAGATCATACCGAAGGCATAACCTTATGA

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Protein seq

MLGEAWRARIRKWSSSRQKCVHNQEDENEHDMFIPSPLGGEMVDVDHDLLQDMLRDVEDLAQNERDGMKFSRLVSDSETPLYAGCKAKHTKLSVTLNLMKVKASSGWTDKSFTDLLGILKAMHPVENTLPETTYEAKQVLCPLGLEVRRIHACPNDCILYHKQYADLDACPVCKVSRYKRKKSADEGNKSKRGGPAKVVWYLPIIDRFKRIFANPNEAKLVRWHATERRNDGPRQPGNDIDVFLEPVIDDLEILWKESVETWDAYGQENFKLRVLLFCTINDYPALGNLSGQTIKGKKACSDCKEHPRNRWLKKSRKMVYMGHRRLLPVRHTFRRKKKIFNGKRELQPAPKDLSGDEVHNMVKDISNEFGKKRKRSKTKEKEKNVCESLVGLMLNIPGKTKDGLNARLDLQDMNIRSELQPKRDAEIGKVYLPPACHTLSEDEKIAMLSCLKDIKVPSGYSARISKYVKLDDLKLVGMKSHDCHVLITQILPVAIRGILPPKVRHTIQRLCAFFNAIGQKVIDPEDLDGLQTDIVNTLCHLEMFFPLSFFDIMVHLSVHLVKQTKLCGPAFLREMWPFERYMGVLKSYIRSRAKPEGSIIKGYTTEEAIEFCVNYMSDADPIGVPASRHEGRLSGVGTIGRKRIRPDQASYVQAHYAVLQHMAEVVPYFEEHLAKIRDENLGRSDAWINREHNSRFNEWFKNRVTMSTDVPNETVQLLGMGPSWTIDTWQGYDINGYTFYTVKQDDKSTVQNSGVRIDAFQDQVGSNTYYGRIEEIWELNYVKFKVPLFHCRWVNLRTSVKADKEGFTLVDLSKVGYADEPFVLAKQVEQIFYTKDPSNKKMHIVRDGKRQIVGVDNVVDEEEYNHNLHVRPHIDLDDDPQESVAYARSDHTEGITL

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0302900 SBH 0.441710 0.816046 0.992700
Nipponbare | IRGSP 1.0 | MSU LOC_Os10g27140 SBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os11g0302900 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0201000 RBH 0 0 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0192000 SBH 0.0113405 0 0.0184
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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