Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g21090 | OGI:04039490 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:11852553-11854107 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCAGGAGTCACGTCAATGTCACCCACCGCAGGTGCGAGATCAGATGCCAGCCCGGAACCCGAATCAGAGTCAGAGTCAGGAGTTCCCAATATCGGCACCGAAGACCCCTGTCAAAATGCTGTCCAGATTCCCGAAGATAACGACAGCCAAGTCAACGTCAGACCAAAGGAAAGTAAGTGCTACCTGTTATGACTGTGGTGAGCAAGGTCATTATGTAAGGAACTGTCCATGGAAGGTGTTCGCCAGGTCACCTGAAAAAGACGAGAAGCAGTGCCCAGGGAGTAACCAAGCTCCAAGTCAGTCTACCGACAAGAAGGATGGTACTTTGCAGCCCAACTCTGGAGCGAACAGGACAGTGATATGGAAGATGGATAATGGCAGGACCATGATCATCACCGGTTCAGAATTTACTCCTGAAGACGCAGCAAGGATACCCAAGCGTCAGAGAGGAAGAAATACCTTCCGAGGAGCGCGTCAGCTAACCCGTCATCTCATAAAGTACGGTCCGCCCAGACCCGAAGATGATGAATCAGGAGAACGGTTTTCTGCTGATGACGATGACGACAACGATGATGATAATGATGAGAATGATGATGCGACCCTTGACAGTTTCAGGGAAAGAGAGTTGAAGTTCAAAGCATGTGCTAGATGTGGGATAGTCGGACACACTGCTAGTTTATGCCTCCCCACATGCCGCTGTGGTGAATATACCCATTACTCAGATGCATGCCCTTTAAGGAAGGTCACATGTTTCTTGTGTGAAGGAACAGATCATGTGCCTAAGGACTGTCAGTTGAATGCGGTCATAGCTAAGACCAAGAAAGAACAAGGGACAACCGTGCAACCCATTCGTCAACCAATGACAATCGACAACAGCGGTCACAATCCTTCTGCTCTTCCTCCAACTCCAGCTCCAGTGGAAGCCAACCATGGAAGAAGCAACGTCACCAAGGATGTTCATAAGTCTCTGCTTGTTCCCGTTTCAGCTGCCAAAGTGCATAATCAGAAGCCTGCACCCTGGGACCAAGCAAGTCGATCCTGTCGCAACTGTCGTAAGCCAGGACATTGTTTCAGTGATTGCCCTCTTCCAAGAGCAGCAAAGGCAGTTCGTCGTGATTCACAAGTTACCAGCACTGCCCATGACACCAATCGACACCTAAATGTGCAACCTCCGCCCCAACGGATTATCGTCAAGGGCACCGTCAAAGGTCGCATTGTTCCACCGGCAATCGTTTCAAGCCTACAACACCAACGCCAGCAAGGTAAGCAATGCCAGGAGAATAATAGCTCGCTACAGCTACAAAGAGGCAGTACACTCCTTCGCCAGCACCCGCGGCAAGCTTCGTCAGCCCCAGGTCACCCAGCAGTTGTCAGCTCTAGCAATGCACCTCGTATTGCTCCAATCCAAAGGCCCATCGGCAAATCACCGCTCGGTAACCCCGCGAGCAAGAAGTTCCTACCTGCTGCAGCTGTCAAGAGAGTTGTTACTCCACCATCGAAGATCAACAAGCAGAGCAACATTCCCGGTGAGACTTCAGCCAGTAGGAATTAA
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| CDS seq | ATGTCAGGAGTCACGTCAATGTCACCCACCGCAGGTGCGAGATCAGATGCCAGCCCGGAACCCGAATCAGAGTCAGAGTCAGGAGTTCCCAATATCGGCACCGAAGACCCCTGTCAAAATGCTGTCCAGATTCCCGAAGATAACGACAGCCAAGTCAACGTCAGACCAAAGGAAAGTCATTATGTAAGGAACTGTCCATGGAAGGTGTTCGCCAGGTCACCTGAAAAAGACGAGAAGCAGTGCCCAGGGAGTAACCAAGCTCCAAGTCAGTCTACCGACAAGAAGGATGGTACTTTGCAGCCCAACTCTGGAGCGAACAGGACAGTGATATGGAAGATGGATAATGGCAGGACCATGATCATCACCGGTTCAGAATTTACTCCTGAAGACGCAGCAAGGATACCCAAGCGTCAGAGAGGAAGAAATACCTTCCGAGGAGCGCGTCAGCTAACCCGTCATCTCATAAAGTACGGTCCGCCCAGACCCGAAGATGATGAATCAGGAGAACGGTTTTCTGCTGATGACGATGACGACAACGATGATGATAATGATGAGAATGATGATGCGACCCTTGACAGTTTCAGGGAAAGAGAGTTGAAGTTCAAAGCATGTGCTAGATGTGGGATAGTCGGACACACTGCTAGTTTATGCCTCCCCACATGCCGCTGTGGTGAATATACCCATTACTCAGATGCATGCCCTTTAAGGAAGGTCACATGTTTCTTGTGTGAAGGAACAGATCATGTGCCTAAGGACTGTCAGTTGAATGCGGTCATAGCTAAGACCAAGAAAGAACAAGGGACAACCGTGCAACCCATTCGTCAACCAATGACAATCGACAACAGCGGTCACAATCCTTCTGCTCTTCCTCCAACTCCAGCTCCAGTGGAAGCCAACCATGGAAGAAGCAACGTCACCAAGGATGTTCATAAGTCTCTGCTTGTTCCCGTTTCAGCTGCCAAAGTGCATAATCAGAAGCCTGCACCCTGGGACCAAGCAAGTCGATCCTGTCGCAACTGTCGTAAGCCAGGACATTGTTTCAGTGATTGCCCTCTTCCAAGAGCAGCAAAGGCAGTTCGTCGTGATTCACAAGTTACCAGCACTGCCCATGACACCAATCGACACCTAAATGTGCAACCTCCGCCCCAACGGATTATCGTCAAGGGCACCGTCAAAGGTCGCATTGTTCCACCGGCAATCGTTTCAAGCCTACAACACCAACGCCAGCAAGGTAAGCAATGCCAGGAGAATAATAGCTCGCTACAGCTACAAAGAGGCAGTACACTCCTTCGCCAGCACCCGCGGCAAGCTTCGTCAGCCCCAGGTCACCCAGCAGTTGTCAGCTCTAGCAATGCACCTCGTATTGCTCCAATCCAAAGGCCCATCGGCAAATCACCGCTCGGTAACCCCGCGAGCAAGAAGTTCCTACCTGCTGCAGCTGTCAAGAGAGTTGTTACTCCACCATCGAAGATCAACAAGCAGAGCAACATTCCCGGTGAGACTTCAGCCAGTAGGAATTAA
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| Protein seq | MSGVTSMSPTAGARSDASPEPESESESGVPNIGTEDPCQNAVQIPEDNDSQVNVRPKESHYVRNCPWKVFARSPEKDEKQCPGSNQAPSQSTDKKDGTLQPNSGANRTVIWKMDNGRTMIITGSEFTPEDAARIPKRQRGRNTFRGARQLTRHLIKYGPPRPEDDESGERFSADDDDDNDDDNDENDDATLDSFRERELKFKACARCGIVGHTASLCLPTCRCGEYTHYSDACPLRKVTCFLCEGTDHVPKDCQLNAVIAKTKKEQGTTVQPIRQPMTIDNSGHNPSALPPTPAPVEANHGRSNVTKDVHKSLLVPVSAAKVHNQKPAPWDQASRSCRNCRKPGHCFSDCPLPRAAKAVRRDSQVTSTAHDTNRHLNVQPPPQRIIVKGTVKGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGSTLLRQHPRQASSAPGHPAVVSSSNAPRIAPIQRPIGKSPLGNPASKKFLPAAAVKRVVTPPSKINKQSNIPGETSASRN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g21090 | LOC_Os04g21090.1 | Chr04 | 11852553 | 11854107 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCAGGAGTCACGTCAATGTCACCCACCGCAGGTGCGAGATCAGATGCCAGCCCGGAACCCGAATCAGAGTCAGAGTCAGGAGTTCCCAATATCGGCACCGAAGACCCCTGTCAAAATGCTGTCCAGATTCCCGAAGATAACGACAGCCAAGTCAACGTCAGACCAAAGGAAAGTCATTATGTAAGGAACTGTCCATGGAAGGTGTTCGCCAGGTCACCTGAAAAAGACGAGAAGCAGTGCCCAGGGAGTAACCAAGCTCCAAGTCAGTCTACCGACAAGAAGGATGGTACTTTGCAGCCCAACTCTGGAGCGAACAGGACAGTGATATGGAAGATGGATAATGGCAGGACCATGATCATCACCGGTTCAGAATTTACTCCTGAAGACGCAGCAAGGATACCCAAGCGTCAGAGAGGAAGAAATACCTTCCGAGGAGCGCGTCAGCTAACCCGTCATCTCATAAAGTACGGTCCGCCCAGACCCGAAGATGATGAATCAGGAGAACGGTTTTCTGCTGATGACGATGACGACAACGATGATGATAATGATGAGAATGATGATGCGACCCTTGACAGTTTCAGGGAAAGAGAGTTGAAGTTCAAAGCATGTGCTAGATGTGGGATAGTCGGACACACTGCTAGTTTATGCCTCCCCACATGCCGCTGTGGTGAATATACCCATTACTCAGATGCATGCCCTTTAAGGAAGGTCACATGTTTCTTGTGTGAAGGAACAGATCATGTGCCTAAGGACTGTCAGTTGAATGCGGTCATAGCTAAGACCAAGAAAGAACAAGGGACAACCGTGCAACCCATTCGTCAACCAATGACAATCGACAACAGCGGTCACAATCCTTCTGCTCTTCCTCCAACTCCAGCTCCAGTGGAAGCCAACCATGGAAGAAGCAACGTCACCAAGGATGTTCATAAGTCTCTGCTTGTTCCCGTTTCAGCTGCCAAAGTGCATAATCAGAAGCCTGCACCCTGGGACCAAGCAAGTCGATCCTGTCGCAACTGTCGTAAGCCAGGACATTGTTTCAGTGATTGCCCTCTTCCAAGAGCAGCAAAGGCAGTTCGTCGTGATTCACAAGTTACCAGCACTGCCCATGACACCAATCGACACCTAAATGTGCAACCTCCGCCCCAACGGATTATCGTCAAGGGCACCGTCAAAGGTCGCATTGTTCCACCGGCAATCGTTTCAAGCCTACAACACCAACGCCAGCAAGGTAAGCAATGCCAGGAGAATAATAGCTCGCTACAGCTACAAAGAGGCAGTACACTCCTTCGCCAGCACCCGCGGCAAGCTTCGTCAGCCCCAGGTCACCCAGCAGTTGTCAGCTCTAGCAATGCACCTCGTATTGCTCCAATCCAAAGGCCCATCGGCAAATCACCGCTCGGTAACCCCGCGAGCAAGAAGTTCCTACCTGCTGCAGCTGTCAAGAGAGTTGTTACTCCACCATCGAAGATCAACAAGCAGAGCAACATTCCCGGTGAGACTTCAGCCAGTAGGAATTAA
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| Protein seq | MSGVTSMSPTAGARSDASPEPESESESGVPNIGTEDPCQNAVQIPEDNDSQVNVRPKESHYVRNCPWKVFARSPEKDEKQCPGSNQAPSQSTDKKDGTLQPNSGANRTVIWKMDNGRTMIITGSEFTPEDAARIPKRQRGRNTFRGARQLTRHLIKYGPPRPEDDESGERFSADDDDDNDDDNDENDDATLDSFRERELKFKACARCGIVGHTASLCLPTCRCGEYTHYSDACPLRKVTCFLCEGTDHVPKDCQLNAVIAKTKKEQGTTVQPIRQPMTIDNSGHNPSALPPTPAPVEANHGRSNVTKDVHKSLLVPVSAAKVHNQKPAPWDQASRSCRNCRKPGHCFSDCPLPRAAKAVRRDSQVTSTAHDTNRHLNVQPPPQRIIVKGTVKGRIVPPAIVSSLQHQRQQGKQCQENNSSLQLQRGSTLLRQHPRQASSAPGHPAVVSSSNAPRIAPIQRPIGKSPLGNPASKKFLPAAAVKRVVTPPSKINKQSNIPGETSASRN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g07070 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0034400 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0005160 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0016420 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0015940 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0016070 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0059700 | SBH | 0.0215025 | 0.281885 | 0.149423 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0015570 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0167400 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0011670 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0011520 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0006320 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0016250 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0015700 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G009220 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0009540 | SBH | 0.0 | 0.0 | 0.0 |
