Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g18140 | OGI:04032130 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:10028650-10030627 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAAGCCCTCGGAGTGTCCTCCTTGGTAAATTCATTCCCCTTCTCTTTATTCCCCTTCTCTTGACTTTGTGTGAGGTGTGCAGCATGCTGTTAGAATTGATCCTGGCTCCATTTTTTTTTGTCAGGATTGATCCTGGCAATGCTGTTAGAGTTGTTGTTAAATGTGCTTCATATGTAGCAAACTTAGAGTATGGACTGCTATCAATGTCAGAGCAAGAGCATGATTGGTGGGTTGATAAATGCAAAGGTTATAGTTTAGATAAATTCTGTGATGATATGACTAGCAAGGTAATATGGGGCCCTAGCCAGGAAATTGTAGTGTGGGGATTAGACTTTGATAGTGGGACTGAATGGAAGGTAACCAACAATGAACAGTTTGAGAAGTGGTTTCAGTCTGGGTGGAAAGAGAAAGTGGTATATCTTGGGGTAGAAGTGGTTACTAAAAAGGGATACAAAACTGCTGAAAGCTATGTAGATCGAGTTGAGTCAACAACTCAAGTTGTCACTAGTGTTTTAAGTGTAGATCTTGATGTTCCATCAATTGCTGAAGGTGGTGTGATAAGTGCAAAACCAACTGGTCAGTCAATTGCTAGATGTGGTGTGATAAATTCAGATTCAATTGATATTTGCTCTCCAGTTCAAATGACCAATGAAGAAGATACTGGTGACACTTGTAACCATGCACCAAATGTAGAAGACTCAGCTGCTCTTGTGGACTGGAGTAAGTTGGCAATCATTTTGGATGGCTTAGATGGTGATGCTCATGCATTGTTGGATGAGGATGAACTATTTGATGCAATGGGTTTCAAAAATACAGATGAGAGAGCAGCAGCAACAGCAATACAAGAAGAAGCTGCACTCCCTGTTATTCCAATTGAGATTCAACAAGATATGATAGATGCAGTCATTGTAGTTAGTGATGAGGTACCTGCTGACCCAGAACTTGTTTGGGATAGGGATGATCCACCAATGGAAGTAGGGACAAAGTATCCATCAATGAATGAGTTCAGAATGGCAGTGAAACAGCATGCAATTGTTAGTGAGTTTGAGCTTGAGACTGAAAAATCTGATCCAGATAGATTTCGAGGAAAGTGTTCTGCAAATGGTTGCCCATGGAAAATCAGAGCAAAGACGCAGGCTGATAAAAGTGTCAGGGTATTATACTAACTATTTAATTGTTGTTAAATTGTACATTATGCTGTATGCATTGATTTTGTTTACCTAATAAGTTGCTAATATGGTTTGCTTGTGCAGATCCAAATAAATGAGGAGGATCATCACTGTGCTTCAAGAAGCAGGGTTCTTGGGAAGATGGCATCTCAAGCTTGGGTGGCTGAAAGGGCTATTCCATTTTTGAAGAAGAAGAAAGACATGGGTGCAAAGGAACTTCAAGGTAAGCTACAGGAGACATACAAGACCACCATAGGCTATCAGACAACGTGGTATGGTTTGCAGAGGGCTAAAGATAAGTTATTTGGAAAGTTTGATGATTCATTTGATTGGTTGTATAGGTTCAAGGCTGAGATAGAAATGAGATCCCCTGGTAGTGTAGTTGAGATTGACATAGTTAGAGTTGGAGATAAGGTTCACTTTAACAGATTCTTTTGTGCTTTCAAAGCTTGCATAGATGGATTCTTAGAGGGCTGTAGGCCATACATTAGTATAGATTCTACTGCTCTCAATGGAATGTGGAATGGACACATGCCTGCAGCCAATGCAATAGATGGGCATAATTGGATGTTTCCATTGGCTTTTGGTCTTTTTGATTCAGAGACCAAAGATAATTGGGTTTGGTTCATGGAGCAATTAGGTAATGCAATAGGGCCAGTAGAGAATTTAGTTGTGCATACTGATGCTTGCAAAGGCCTAGAAACTGCTGTAAAAAAAGTTTTCCCATGGGCTGAACAAAGAGAGTGCTTTAGGCACTTGATGGAGAATATGAATAAATTGTTTCATGGGAACATATCTACCCTATAA
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| CDS seq | ATGAAGCCCTCGGAGTGTCCTCCTTGGATTGATCCTGGCAATGCTGTTAGAGTTGTTGTTAAATGTGCTTCATATGTAGCAAACTTAGAGTATGGACTGCTATCAATGTCAGAGCAAGAGCATGATTGGTGGGTTGATAAATGCAAAGGTTATAGTTTAGATAAATTCTGTGATGATATGACTAGCAAGGTAATATGGGGCCCTAGCCAGGAAATTGTAGTGTGGGGATTAGACTTTGATAGTGGGACTGAATGGAAGGTAACCAACAATGAACAGTTTGAGAAGTGGTTTCAGTCTGGGTGGAAAGAGAAAGTGGTATATCTTGGGGTAGAAGTGGTTACTAAAAAGGGATACAAAACTGCTGAAAGCTATGTAGATCGAGTTGAGTCAACAACTCAAGTTGTCACTAGTGTTTTAAGTGTAGATCTTGATGTTCCATCAATTGCTGAAGGTGGTGTGATAAGTGCAAAACCAACTGGTCAGTCAATTGCTAGATGTGGTGTGATAAATTCAGATTCAATTGATATTTGCTCTCCAGTTCAAATGACCAATGAAGAAGATACTGGTGACACTTGTAACCATGCACCAAATGTAGAAGACTCAGCTGCTCTTGTGGACTGGAGTAAGTTGGCAATCATTTTGGATGGCTTAGATGGTGATGCTCATGCATTGTTGGATGAGGATGAACTATTTGATGCAATGGGTTTCAAAAATACAGATGAGAGAGCAGCAGCAACAGCAATACAAGAAGAAGCTGCACTCCCTGTTATTCCAATTGAGATTCAACAAGATATGATAGATGCAGTCATTGTAGTTAGTGATGAGGTACCTGCTGACCCAGAACTTGTTTGGGATAGGGATGATCCACCAATGGAAGTAGGGACAAAGTATCCATCAATGAATGAGTTCAGAATGGCAGTGAAACAGCATGCAATTGTTAGTGAGTTTGAGCTTGAGACTGAAAAATCTGATCCAGATAGATTTCGAGGAAAGTGTTCTGCAAATGGTTGCCCATGGAAAATCAGAGCAAAGACGCAGGCTGATAAAAGTGTCAGGATCCAAATAAATGAGGAGGATCATCACTGTGCTTCAAGAAGCAGGGTTCTTGGGAAGATGGCATCTCAAGCTTGGGTGGCTGAAAGGGCTATTCCATTTTTGAAGAAGAAGAAAGACATGGGTGCAAAGGAACTTCAAGGTAAGCTACAGGAGACATACAAGACCACCATAGGCTATCAGACAACGTGGTATGGTTTGCAGAGGGCTAAAGATAAGTTATTTGGAAAGTTTGATGATTCATTTGATTGGTTGTATAGGTTCAAGGCTGAGATAGAAATGAGATCCCCTGGTAGTGTAGTTGAGATTGACATAGTTAGAGTTGGAGATAAGGTTCACTTTAACAGATTCTTTTGTGCTTTCAAAGCTTGCATAGATGGATTCTTAGAGGGCTGTAGGCCATACATTAGTATAGATTCTACTGCTCTCAATGGAATGTGGAATGGACACATGCCTGCAGCCAATGCAATAGATGGGCATAATTGGATGTTTCCATTGGCTTTTGGTCTTTTTGATTCAGAGACCAAAGATAATTGGGTTTGGTTCATGGAGCAATTAGGTAATGCAATAGGGCCAGTAGAGAATTTAGTTGTGCATACTGATGCTTGCAAAGGCCTAGAAACTGCTGTAAAAAAAGTTTTCCCATGGGCTGAACAAAGAGAGTGCTTTAGGCACTTGATGGAGAATATGAATAAATTGTTTCATGGGAACATATCTACCCTATAA
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| Protein seq | MKPSECPPWIDPGNAVRVVVKCASYVANLEYGLLSMSEQEHDWWVDKCKGYSLDKFCDDMTSKVIWGPSQEIVVWGLDFDSGTEWKVTNNEQFEKWFQSGWKEKVVYLGVEVVTKKGYKTAESYVDRVESTTQVVTSVLSVDLDVPSIAEGGVISAKPTGQSIARCGVINSDSIDICSPVQMTNEEDTGDTCNHAPNVEDSAALVDWSKLAIILDGLDGDAHALLDEDELFDAMGFKNTDERAAATAIQEEAALPVIPIEIQQDMIDAVIVVSDEVPADPELVWDRDDPPMEVGTKYPSMNEFRMAVKQHAIVSEFELETEKSDPDRFRGKCSANGCPWKIRAKTQADKSVRIQINEEDHHCASRSRVLGKMASQAWVAERAIPFLKKKKDMGAKELQGKLQETYKTTIGYQTTWYGLQRAKDKLFGKFDDSFDWLYRFKAEIEMRSPGSVVEIDIVRVGDKVHFNRFFCAFKACIDGFLEGCRPYISIDSTALNGMWNGHMPAANAIDGHNWMFPLAFGLFDSETKDNWVWFMEQLGNAIGPVENLVVHTDACKGLETAVKKVFPWAEQRECFRHLMENMNKLFHGNISTL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g18140 | LOC_Os04g18140.1 | Chr04 | 10028650 | 10030627 | + | MSU_osa1r7 | ||
| CDS seq | ATGAAGCCCTCGGAGTGTCCTCCTTGGATTGATCCTGGCAATGCTGTTAGAGTTGTTGTTAAATGTGCTTCATATGTAGCAAACTTAGAGTATGGACTGCTATCAATGTCAGAGCAAGAGCATGATTGGTGGGTTGATAAATGCAAAGGTTATAGTTTAGATAAATTCTGTGATGATATGACTAGCAAGGTAATATGGGGCCCTAGCCAGGAAATTGTAGTGTGGGGATTAGACTTTGATAGTGGGACTGAATGGAAGGTAACCAACAATGAACAGTTTGAGAAGTGGTTTCAGTCTGGGTGGAAAGAGAAAGTGGTATATCTTGGGGTAGAAGTGGTTACTAAAAAGGGATACAAAACTGCTGAAAGCTATGTAGATCGAGTTGAGTCAACAACTCAAGTTGTCACTAGTGTTTTAAGTGTAGATCTTGATGTTCCATCAATTGCTGAAGGTGGTGTGATAAGTGCAAAACCAACTGGTCAGTCAATTGCTAGATGTGGTGTGATAAATTCAGATTCAATTGATATTTGCTCTCCAGTTCAAATGACCAATGAAGAAGATACTGGTGACACTTGTAACCATGCACCAAATGTAGAAGACTCAGCTGCTCTTGTGGACTGGAGTAAGTTGGCAATCATTTTGGATGGCTTAGATGGTGATGCTCATGCATTGTTGGATGAGGATGAACTATTTGATGCAATGGGTTTCAAAAATACAGATGAGAGAGCAGCAGCAACAGCAATACAAGAAGAAGCTGCACTCCCTGTTATTCCAATTGAGATTCAACAAGATATGATAGATGCAGTCATTGTAGTTAGTGATGAGGTACCTGCTGACCCAGAACTTGTTTGGGATAGGGATGATCCACCAATGGAAGTAGGGACAAAGTATCCATCAATGAATGAGTTCAGAATGGCAGTGAAACAGCATGCAATTGTTAGTGAGTTTGAGCTTGAGACTGAAAAATCTGATCCAGATAGATTTCGAGGAAAGTGTTCTGCAAATGGTTGCCCATGGAAAATCAGAGCAAAGACGCAGGCTGATAAAAGTGTCAGGATCCAAATAAATGAGGAGGATCATCACTGTGCTTCAAGAAGCAGGGTTCTTGGGAAGATGGCATCTCAAGCTTGGGTGGCTGAAAGGGCTATTCCATTTTTGAAGAAGAAGAAAGACATGGGTGCAAAGGAACTTCAAGGTAAGCTACAGGAGACATACAAGACCACCATAGGCTATCAGACAACGTGGTATGGTTTGCAGAGGGCTAAAGATAAGTTATTTGGAAAGTTTGATGATTCATTTGATTGGTTGTATAGGTTCAAGGCTGAGATAGAAATGAGATCCCCTGGTAGTGTAGTTGAGATTGACATAGTTAGAGTTGGAGATAAGGTTCACTTTAACAGATTCTTTTGTGCTTTCAAAGCTTGCATAGATGGATTCTTAGAGGGCTGTAGGCCATACATTAGTATAGATTCTACTGCTCTCAATGGAATGTGGAATGGACACATGCCTGCAGCCAATGCAATAGATGGGCATAATTGGATGTTTCCATTGGCTTTTGGTCTTTTTGATTCAGAGACCAAAGATAATTGGGTTTGGTTCATGGAGCAATTAGGTAATGCAATAGGGCCAGTAGAGAATTTAGTTGTGCATACTGATGCTTGCAAAGGCCTAGAAACTGCTGTAAAAAAAGTTTTCCCATGGGCTGAACAAAGAGAGTGCTTTAGGCACTTGATGGAGAATATGAATAAATTGTTTCATGGGAACATATCTACCCTATAA
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| Protein seq | MKPSECPPWIDPGNAVRVVVKCASYVANLEYGLLSMSEQEHDWWVDKCKGYSLDKFCDDMTSKVIWGPSQEIVVWGLDFDSGTEWKVTNNEQFEKWFQSGWKEKVVYLGVEVVTKKGYKTAESYVDRVESTTQVVTSVLSVDLDVPSIAEGGVISAKPTGQSIARCGVINSDSIDICSPVQMTNEEDTGDTCNHAPNVEDSAALVDWSKLAIILDGLDGDAHALLDEDELFDAMGFKNTDERAAATAIQEEAALPVIPIEIQQDMIDAVIVVSDEVPADPELVWDRDDPPMEVGTKYPSMNEFRMAVKQHAIVSEFELETEKSDPDRFRGKCSANGCPWKIRAKTQADKSVRIQINEEDHHCASRSRVLGKMASQAWVAERAIPFLKKKKDMGAKELQGKLQETYKTTIGYQTTWYGLQRAKDKLFGKFDDSFDWLYRFKAEIEMRSPGSVVEIDIVRVGDKVHFNRFFCAFKACIDGFLEGCRPYISIDSTALNGMWNGHMPAANAIDGHNWMFPLAFGLFDSETKDNWVWFMEQLGNAIGPVENLVVHTDACKGLETAVKKVFPWAEQRECFRHLMENMNKLFHGNISTL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.094659 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0484950 | SBH | 0.298804 | 0.485973 | 1.384007 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g04150 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0484950 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0005380 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0006000 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005810 | RBH | 0.000000 | 0.0 | 6.410179 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0005430 | RBH | 0.136074 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0005440 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0141400 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005510 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0160900 | RBH | 0.007268 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0005310 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0005660 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0005400 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0005230 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005540 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G005560 | RBH | 0.000000 | 0.0 | 0.567078 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0005390 | RBH | 1.860915 | 0.000000 | 3.900529 |
