Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g16846 | OGI:06023730 | 10/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:9162190-9162888 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATAAAGGGCCCGAAATACCTTGCTTACGTATCATTAGAAAGTGCATTAACATAAATACGGCAGTAAGCAGAGGAAGTACAAAGGTATGTAAACTATAAAAACGAGTCAAAGTGGATTGACCCACACTAGCACTTCCACGTAATAACTCCACTAAAGGTGATCCTATTACCGGAATCGCGTCAGGCACACCTGTCACAATTTTGACTGCCCAATAACCAATTTGATCCCAAGGTAAAGAATAACCAGTTACACCAAACGATGCAGTTAATACAGCTAAAACCACACCAGTGACCCAAGTTAATTCGCGGGGTTTTTTAAACCCACCTGTGAGATACACACGAAATACGTGCAGGATCATCATTAGAACCATCATACTTGCTGACCATCGATGAACTGATCGGATTAACCAACCAAAGTTGGCCTCGGTCATTATGTATTGAACCGAGGAAAAAGCCTCTGTAACGGTTGGGCGATAGTAAAAAGTCATAGCAAAACCGGTAGCAACTTGTACTAGAAAACAAGTAAGTGTAATTCCCCCTAAACAATAAAATATGTTGACATGAGGAGGAACATATTTACTAGTTATATCATCTGCAATTGCCTGAATCTCAAGACGTTCCTCAAACCAATCATATACTTTATTGAGATAGGTAACTAACCCGAACCCCCCTCCGAGAACCGTATATGAGAATTTCAT
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| CDS seq | ATGAAATTCTCATATACGGTTCTCGGAGGGGGGTTCGGGTTAGTTACCTATCTCAATAAAGTATATGATTGGTTTGAGGAACGTCTTGAGATTCAGGCAATTGCAGATGATATAACTAGTAAATATGTTCCTCCTCATGTCAACATATTTTATTGTTTAGGGGGAATTACACTTACTTGTTTTCTAGTACAAGTTGCTACCGGTTTTGCTATGACTTTTTACTATCGCCCAACCGTTACAGAGGCTTTTTCCTCGGTTCAATACATAATGACCGAGGCCAACTTTGGTTGGTTAATCCGATCAGTTCATCGATGGTCAGCAAGTATGATGGTTCTAATGATGATCCTGCACGTATTTCGTGTGTATCTCACAGGTGGGTTTAAAAAACCCCGCGAATTAACTTGGGTCACTGGTGTGGTTTTAGCTGTATTAACTGCATCGTTTGGTGTAACTGGTTATTCTTTACCTTGGGATCAAATTGGTTATTGGGCAGTCAAAATTGTGACAGGTGTGCCTGACGCGATTCCGGTAATAGGATCACCTTTAGTGGAGTTATTACGTGGAAGTGCTAGTGTGGGTCAATCCACTTTGACTCGTTTTTATAGTTTACATACCTTTGTACTTCCTCTGCTTACTGCCGTATTTATGTTAATGCACTTTCTAATGATACGTAAGCAAGGTATTTCGGGCCCTTTATAA
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| Protein seq | MKFSYTVLGGGFGLVTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL |
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| Function | Cytochrome b6 [UniProtKB/Swiss-Prot:P60162] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g16846 | LOC_Os04g16846.1 | Chr04 | 9162190 | 9162888 | - | MSU_osa1r7 | ||
| CDS seq | ATGAAATTCTCATATACGGTTCTCGGAGGGGGGTTCGGGTTAGTTACCTATCTCAATAAAGTATATGATTGGTTTGAGGAACGTCTTGAGATTCAGGCAATTGCAGATGATATAACTAGTAAATATGTTCCTCCTCATGTCAACATATTTTATTGTTTAGGGGGAATTACACTTACTTGTTTTCTAGTACAAGTTGCTACCGGTTTTGCTATGACTTTTTACTATCGCCCAACCGTTACAGAGGCTTTTTCCTCGGTTCAATACATAATGACCGAGGCCAACTTTGGTTGGTTAATCCGATCAGTTCATCGATGGTCAGCAAGTATGATGGTTCTAATGATGATCCTGCACGTATTTCGTGTGTATCTCACAGGTGGGTTTAAAAAACCCCGCGAATTAACTTGGGTCACTGGTGTGGTTTTAGCTGTATTAACTGCATCGTTTGGTGTAACTGGTTATTCTTTACCTTGGGATCAAATTGGTTATTGGGCAGTCAAAATTGTGACAGGTGTGCCTGACGCGATTCCGGTAATAGGATCACCTTTAGTGGAGTTATTACGTGGAAGTGCTAGTGTGGGTCAATCCACTTTGACTCGTTTTTATAGTTTACATACCTTTGTACTTCCTCTGCTTACTGCCGTATTTATGTTAATGCACTTTCTAATGATACGTAAGCAAGGTATTTCGGGCCCTTTATAA
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| Protein seq | MKFSYTVLGGGFGLVTYLNKVYDWFEERLEIQAIADDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFSSVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPDAIPVIGSPLVELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMIRKQGISGPL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 362.360840 | 374.553802 | 54.673241 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g21324 | RBH | 288.147827 | 264.427643 | 41.638622 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006750 | SBH | 365.169739 | 33.285862 | 322.667328 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0035860 | SBH | 516.208984 | 35.845612 | 601.950195 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_Ung0000550 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006730 | SBH | 70.395493 | 0.498259 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0140600 | RBH | 4151.807251 | 321.1246795 | 149.580002 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0550000 | SBH | 6147.8862305 | 331.968552 | 270.663452 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0021490 | SBH | 140.383286 | 0.0 | 48.373127 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006610 | SBH | 448.440643 | 26.425066 | 453.750824 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
