Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g12080 | OGI:04021260 | 10/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:6634002-6638846 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CACATTCGCCTCTTCTCTCGATCTTTCTGCTCTTGTTCTTTCTTAGTTTTCCGGCGGTTCTATCTCTCCTCCAAGACAAATGGAATCCTCTCCCCTATGCACTCTCTATCCTCGCGGTGGAGTTCTCCAATACCTTGATCATCACCTATGCCCACCCTTGCCTTCTCTTTTCGCCCGGTCTGTCGGATCTGAGAATGATGGTGTTTGGGGATGTCCAATCCACTCAGTGGCGGTGGTTCTTGGGGCCGACAGATCTATGCATGAGAAGGCATAGGCTTGGCAGATCCATATTCTTCCTGCCGCCCCTTTCTTGCTCTGAGCTCAAAGCCTGCAGGAATGCAGGATGAGGATGCCACCGAGGCAACTTCTGTAGGGGATCATGGGCTCATGGCGGTGGCAGATCTGGTGGGTAGAGGACATTGTGGAATAGGAGAAATAGGATAGGGAAGCGGTGGCCGAGATGGAGAAGGGAGAGGGGGAGGCACAGTCGCGCAGATGGTTGATGACTGATGACGCATCAGTAGGCTGGTTGCTTGGCCATGGTCTGCACACTCTCTGTTTTTATCAACCTACGTTTTTGTTGCAACTCCTGTGGTTCGGTTCTTGTAGCTTTCATTAAGTCATTATAAATTCAATTTCCTAATAAATCATTAATCATGACATCCCAATCTTGTTTTATGTTTATTATACAGATATATCCAGAGGAATTGTTTCGAAATATCACAATTAATCTGTTCAAAACAATATTACCATATGTACAACTCATATTTACCCATAGCAAATCACAGGTAATTAGCTAGTATTTCCAAAGTTAAAATGACTAATCTAAGGTATAGATTGGAAAACAAGTTTTCTATCTGTATCTCAAATTATTGTATTAAAGTTTTGTTGATCAAATGCTCCACTGATATTCAGGGAGGATTCAAAGAATTTTGTCGTGTATATTTCTCTTTCAAATAATAGCTTTCAAGCTTTCACTCCAACTAATCATGCAGGAAAGAAGGGGACAAATGTGATTGTTGCCACCACAGTTTCTATTGGAACAATACTACTAGTGGCTGTCTTTATTGCCGTTTTCATCTACAGGAGAAAGACAACGAAGACAATGATACCACCAGGTATGACATGCACTAAAAAAAAATCCATTTTGGAAGACGAACCCATTTTACTTTACAGACGGTACATAAGAACGTCTGTTCTATACATCTGGGCCCGTAGTCATGGAACGCTTCTACACATTGATTTTTCGTTTTCTGCTGCCAGATTACTAGTATACCGATATTACCATAAGATAAGTCTAAATCTAGAATCTGTCAAAATAATTATCTCGTACTCAAACTCATATATAATTCGCATTAGATCCGCTCGAAAGAATTTACATAAGCTTACATAAACATAACATAAGTTTACATAAGCTGACGTTATTTAAATTTAAATAGTATGTAGAATGATGATTCAAATGTAAAAGTAATATGATGTGGTTTATGAGAGAATAAAAGAAGGAAGATAATTTAGATCATACATCTACGGGCTAAAAAAATTAAAATGATATGGCTTAATGAGAGAAGAAAAAAAAGAGATAATTTGAGCCATAGAATAATCATCTAAGAACTAAATACAATTGATGTGATATGATTTAATGGCAGAAAAGAAAAATAACATGAACTAAGTGATGATGAACTATATAGGTGTATAGAATATTATAAAAAAAATGATGGGGCGATATATTGAAATATTATGTGAATTATGTCGGACGATATAACATACTTACTTTTAAATCTCTAAAGTTTAATAAAATTATTAAATTAGAGATAATATAGCATGCTTGCATGATACTTAAATGTAATAATTGTTAGTGGATGATGATGTGGCATCTTTACATGTTAAGTTTTAGAAATTAGTGTGCTACAACTTTATTGTAAGAGTGGATTTATAAAATGAAATCCTTCCAGAGGAATAAAAATATACCCATTACACAGCGTGCATGTAACTTCTGAATTTCAGTATACGAAAGTGTCCAGATAGCACGGTGCAATGTACGATTTATTGCCAAGACAACTCATATAAAGTAATACATCGGAGGCTCAATATTAAGTTCTGATGCGACAAAATATGTGATTGCAAATGATTCACAATGTAATCTTGCGTGCCCCCAATTCCCTTTCTTCGTTTCGTAACCCAAATGATTGAAATAGCTAAGACACCGAGATAAACTTTTAACACAGAAGATGAAACTTTCAACTAATAAAATGAAACTTTCTATGAAAAGCCTTTCGATTTCAATTTTTTTTAAAAAAAAATGCTCTGAAACTCTCAATTGAAATAAAACTTTTTGCATCTCCCTAGAAATTTCAAATCAATTAGATTGTGGAAGTGCAATAAATATCAGTCTTTGGCCTCAGCTAGCTACGTCCCCTCGCACTCATGCGTCTACATTTTTTTTTTGTCAGACAACACCGGCAATGAGGAGGACAATGACTATGTTGACCCACCGACCCTTAACTTAACAGTGTTGAGAGCTGCAACAAGGAACTTCTCGGCAGAAAATAAGCTGGGAGAAGGAGGTTTCGGAGAAGTTTTTAAGGTACATTTTCAACTGTATATAAAGCAAAGTTTACATTTCGACACCCATACATAATGGGAACAAAACACTCTAACCTGCTCAAAACTAGGAAGCATGTCTCAGATGTCTTAGAGATACAAGAGGAAGTAGAGAAAGGAATCAGTCAGTGTTATAGAATTAATCAGCAATAAAAAATCGGTTTATATCACTAAAAGTACTTGCAGTAATGAAAGTGAAATTCAAGCATTTGATTTGTTTTTCTTCAAAAGAGTGCATTTATAGCTTGTAAATATAAAGTATAACCTTAGGACATCTTTGGTTACTAGTACTAGTACTAAGTTGCCATAAGTTATAACTGTGGGTTGTCCTTAAAAATGTAACTTATGACAACTCACAGTTGGAATGGTCTAACAATGTCATGGGAAAAATAATTTCTTTTTACAGCTAGGGATGGGAGTATTGGGCCCATGCATTTCCATCCCTACATCTAAGCACAAAGTAATTCATTTTTCCAGGGTATACTAGAAGACGGGGAAGAAATAGCAGTGAAAAGGCTTTCGAAGACCTCCTCACAGGGGTTCCATGAATTGAAAAATGAACTCGTGCTAGCTGCCAAGCTCAAGCACAAAAATTTGGTGCGGTTACTAGGTGTTTGCTTGCAGGAAGAAAAACTACTTGTGTATGAATACATGCCTAATAGAAGCCTAGATACCATCCTTTTTGGTAATTCCTCCAACTATGTTTGTCCATCATGCTCTGATATTGAAAAAATGAAATACTAAAATTCGTATATCAAGAGTTTAGATCCATTTTATGCCGCTAAGTCTCGTGCATGTTGCTCACTTTTGGGCTCACCAAAGGGAAGTATGCATATCCATGGAACTTAGTGACATAAGATGTCTTCATCCATATCTTGATTAGACTGTCCATGTATTTAATTTGCAGAGCCTGAGAAACGACAACAACTGGATTGGAGAAAAAGGTTTATGATCATTTGTGGAATTGCTCGAGGCCTTCTATATCTGCATGAAGAGTCTAGCCAGAAGATCATAGATAGGGATCTGAAGCCAAGCAATGTCCTATTAGATGAGGATATGATCCCCAAGATCTCAGATTTTGGCCTTGCCAGGGCTTTTGGTGGAGAGCAATCGAAGGATGTTACAAGACGCCCTGTTGGAACCCTGTAAGTGTATTATAAGATCCTGTACTAAACTCTACCTCTTCGGATGCACTGTGACAATTGAATGATTTGAACATTGTCCGTATGAGACACGTTCAAATCGAGCAGGCACTTGCCATCTATCTTTGCTCAACTCTTTGATGAAAAGAGTCAAAAGACTGCTTACTTATTTTTCCTGTTGGCATTACTATTTCGTGCAGTGGGTATATGTCGCCGGAGTATGCCTACTGCGGGCATGTCTCCACTAAGTCAGATATGTTCAGTTTTGGGGTCATTGTTCTTGAGATGGTGACCGGTAGAAGGAGCAACGGGATGTATGCTTCCACCAAGTCAGATACTTATGAATCTGCCGACTCCACGTCTCTACTGAGCTACGTGAGTACATATTGAGGACTAATAGCTTTAGTTTCTAACTATGTTTAGAGAAAAACGTACGTACATGCTCTAGCTTCCAGTTCATGAACAACGAGCTCCATCATTGTGCAGGTATGGGAGAAATGGAGGACACGATCCCTAGCTGACGCAGTGGACGCGTCGTTGGGTGGCCGATACCCTGAAAACGAGGTCTTCAGCTGCGTGCAGATTGGGCTACTGTGTGTCCAAGAGAATCCAGCCGACAGGCCGGACATTTCAGCTGTGGTGCTAATGTTGAGCAGCAATTCCACGTCGCTGCAGACTCCTTCTAAGCCGGCGTTCTTCTTCGGCTCTGGCAGCATCGCAAGCTTGGATGCTGCTGGTGGACATGCATTTTTCGGTGGCCGGGGTTCAGAAGTTGCGGCCATCAGCAGTAACAAGATGTCCAGTAACCCCGTTTCAGAGAATGAGGTCACGATTTCAGAGCTTCAACCGAGGTAGAAGAACAAATGCGTCTGCATCAATTGTCAGTATTCAGGACACTTGATGTCCCCCGAATATCGGTGGTAATATGGCAATAATGTCCAACAGATAAGTTAGTGTTCAGCGTATAAATTATTACACTAAAGCCTCTCCAAATCTCTCTAAGAATGCATTCCCGGTATGAAACTAATGGAAAAGCTATAATGATATCGATTAGATCGCACATTTTGATATTGGAACTACTGAAATCCTTCAAATGATCTGA
More
|
||||||||||
| CDS seq | ATGGAGAAGGGAGAGGGGGAGGCACAGTCGCGCAGATGGTTGATGACTGATGACGCATCAGTAGGCTGGTTGCTTGGCCATGGAAAGAAGGGGACAAATGTGATTGTTGCCACCACAGTTTCTATTGGAACAATACTACTAGTGGCTGTCTTTATTGCCGTTTTCATCTACAGGAGAAAGACAACGAAGACAATGATACCACCAGACAACACCGGCAATGAGGAGGACAATGACTATGTTGACCCACCGACCCTTAACTTAACAGTGTTGAGAGCTGCAACAAGGAACTTCTCGGCAGAAAATAAGCTGGGAGAAGGAGGTTTCGGAGAAGTTTTTAAGGGTATACTAGAAGACGGGGAAGAAATAGCAGTGAAAAGGCTTTCGAAGACCTCCTCACAGGGGTTCCATGAATTGAAAAATGAACTCGTGCTAGCTGCCAAGCTCAAGCACAAAAATTTGGTGCGGTTACTAGGTGTTTGCTTGCAGGAAGAAAAACTACTTGTGTATGAATACATGCCTAATAGAAGCCTAGATACCATCCTTTTTGAGCCTGAGAAACGACAACAACTGGATTGGAGAAAAAGGTTTATGATCATTTGTGGAATTGCTCGAGGCCTTCTATATCTGCATGAAGAGTCTAGCCAGAAGATCATAGATAGGGATCTGAAGCCAAGCAATGTCCTATTAGATGAGGATATGATCCCCAAGATCTCAGATTTTGGCCTTGCCAGGGCTTTTGGTGGAGAGCAATCGAAGGATGTTACAAGACGCCCTGTTGGAACCCTTGGGTATATGTCGCCGGAGTATGCCTACTGCGGGCATGTCTCCACTAAGTCAGATATGTTCAGTTTTGGGGTCATTGTTCTTGAGATGGTGACCGGTAGAAGGAGCAACGGGATGTATGCTTCCACCAAGTCAGATACTTATGAATCTGCCGACTCCACGTCTCTACTGAGCTACGTATGGGAGAAATGGAGGACACGATCCCTAGCTGACGCAGTGGACGCGTCGTTGGGTGGCCGATACCCTGAAAACGAGGTCTTCAGCTGCGTGCAGATTGGGCTACTGTGTGTCCAAGAGAATCCAGCCGACAGGCCGGACATTTCAGCTGTGGTGCTAATGTTGAGCAGCAATTCCACGTCGCTGCAGACTCCTTCTAAGCCGGCGTTCTTCTTCGGCTCTGGCAGCATCGCAAGCTTGGATGCTGCTGGTGGACATGCATTTTTCGGTGGCCGGGGTTCAGAAGTTGCGGCCATCAGCAGTAACAAGATGTCCAGTAACCCCGTTTCAGAGAATGAGGTCACGATTTCAGAGCTTCAACCGAGGTAG
More
|
||||||||||
| Protein seq | MEKGEGEAQSRRWLMTDDASVGWLLGHGKKGTNVIVATTVSIGTILLVAVFIAVFIYRRKTTKTMIPPDNTGNEEDNDYVDPPTLNLTVLRAATRNFSAENKLGEGGFGEVFKGILEDGEEIAVKRLSKTSSQGFHELKNELVLAAKLKHKNLVRLLGVCLQEEKLLVYEYMPNRSLDTILFEPEKRQQLDWRKRFMIICGIARGLLYLHEESSQKIIDRDLKPSNVLLDEDMIPKISDFGLARAFGGEQSKDVTRRPVGTLGYMSPEYAYCGHVSTKSDMFSFGVIVLEMVTGRRSNGMYASTKSDTYESADSTSLLSYVWEKWRTRSLADAVDASLGGRYPENEVFSCVQIGLLCVQENPADRPDISAVVLMLSSNSTSLQTPSKPAFFFGSGSIASLDAAGGHAFFGGRGSEVAAISSNKMSSNPVSENEVTISELQPR |
||||||||||
| Function | Cysteine-rich receptor-like protein kinase 6 [UniProtKB/Swiss-Prot:Q0D5R3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g12080 | LOC_Os04g12080.1 | Chr04 | 6634002 | 6638846 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGAAGGGAGAGGGGGAGGCACAGTCGCGCAGATGGTTGATGACTGATGACGCATCAGTAGGCTGGTTGCTTGGCCATGGAAAGAAGGGGACAAATGTGATTGTTGCCACCACAGTTTCTATTGGAACAATACTACTAGTGGCTGTCTTTATTGCCGTTTTCATCTACAGGAGAAAGACAACGAAGACAATGATACCACCAGACAACACCGGCAATGAGGAGGACAATGACTATGTTGACCCACCGACCCTTAACTTAACAGTGTTGAGAGCTGCAACAAGGAACTTCTCGGCAGAAAATAAGCTGGGAGAAGGAGGTTTCGGAGAAGTTTTTAAGGGTATACTAGAAGACGGGGAAGAAATAGCAGTGAAAAGGCTTTCGAAGACCTCCTCACAGGGGTTCCATGAATTGAAAAATGAACTCGTGCTAGCTGCCAAGCTCAAGCACAAAAATTTGGTGCGGTTACTAGGTGTTTGCTTGCAGGAAGAAAAACTACTTGTGTATGAATACATGCCTAATAGAAGCCTAGATACCATCCTTTTTGAGCCTGAGAAACGACAACAACTGGATTGGAGAAAAAGGTTTATGATCATTTGTGGAATTGCTCGAGGCCTTCTATATCTGCATGAAGAGTCTAGCCAGAAGATCATAGATAGGGATCTGAAGCCAAGCAATGTCCTATTAGATGAGGATATGATCCCCAAGATCTCAGATTTTGGCCTTGCCAGGGCTTTTGGTGGAGAGCAATCGAAGGATGTTACAAGACGCCCTGTTGGAACCCTTGGGTATATGTCGCCGGAGTATGCCTACTGCGGGCATGTCTCCACTAAGTCAGATATGTTCAGTTTTGGGGTCATTGTTCTTGAGATGGTGACCGGTAGAAGGAGCAACGGGATGTATGCTTCCACCAAGTCAGATACTTATGAATCTGCCGACTCCACGTCTCTACTGAGCTACGTATGGGAGAAATGGAGGACACGATCCCTAGCTGACGCAGTGGACGCGTCGTTGGGTGGCCGATACCCTGAAAACGAGGTCTTCAGCTGCGTGCAGATTGGGCTACTGTGTGTCCAAGAGAATCCAGCCGACAGGCCGGACATTTCAGCTGTGGTGCTAATGTTGAGCAGCAATTCCACGTCGCTGCAGACTCCTTCTAAGCCGGCGTTCTTCTTCGGCTCTGGCAGCATCGCAAGCTTGGATGCTGCTGGTGGACATGCATTTTTCGGTGGCCGGGGTTCAGAAGTTGCGGCCATCAGCAGTAACAAGATGTCCAGTAACCCCGTTTCAGAGAATGAGGTCACGATTTCAGAGCTTCAACCGAGGTAG
More
|
|||||||
| Protein seq | MEKGEGEAQSRRWLMTDDASVGWLLGHGKKGTNVIVATTVSIGTILLVAVFIAVFIYRRKTTKTMIPPDNTGNEEDNDYVDPPTLNLTVLRAATRNFSAENKLGEGGFGEVFKGILEDGEEIAVKRLSKTSSQGFHELKNELVLAAKLKHKNLVRLLGVCLQEEKLLVYEYMPNRSLDTILFEPEKRQQLDWRKRFMIICGIARGLLYLHEESSQKIIDRDLKPSNVLLDEDMIPKISDFGLARAFGGEQSKDVTRRPVGTLGYMSPEYAYCGHVSTKSDMFSFGVIVLEMVTGRRSNGMYASTKSDTYESADSTSLLSYVWEKWRTRSLADAVDASLGGRYPENEVFSCVQIGLLCVQENPADRPDISAVVLMLSSNSTSLQTPSKPAFFFGSGSIASLDAAGGHAFFGGRGSEVAAISSNKMSSNPVSENEVTISELQPR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.828382 | 0.248131 | 0.263559 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0197200 | RBH | 1.213751 | 0.390195 | 0.951809 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g12180 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0197200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0003920 | RBH | 0.0 | 0.000000 | 0.580739 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0004440 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0003950 | RBH | 0.606579 | 0.0 | 1.128833 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0018060 | SBH | 0.0 | 0.679471 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003930 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0097800 | RBH | 0.1347815 | 0.051341 | 1.3843725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0004070 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0080200 | SBH | 0.018337 | 0 | 0.143939 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0003950 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0003190 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004020 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0003850 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G004190 | RBH | 0.0 | 0.378157 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0003920 | RBH | 0.0 | 0.0 | 0.000000 |
