Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g11440 | OGI:04019990 | 10/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:6255954-6258351 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTCCATCACAAATCATTCAGAGTAGTCCTTTTAGATAAAGGTCATAGGACCTTGCTTTTCATTGAAAGCAAAGCAAGGAACTGCAGGTATTTCCAACATACAGGATAATATCAGGTTTTCTGGTCAGACCCCAGTCATCTAACAGACATAACTCAACAAGTTTTAACAGAACATCCTAAAGACAGTAAACTAGGACTATAAACCTTCCCCTGGCTTCACCTAGTCAAAGTGATAGCACATACCTAATAGACACAATGTACAACTCCAGCAAAGATAAAACACCAAGCAGCTACATCCAGCAAGACTAGTATCAGGTCAGCCAACTCCAGAATGTGGTAATCGCCAAGCTTTTCATGGCATCATGTAGCGCTGAAGACAAGAGTTCCACCCAACTGACTTCATCAGATAACAGATGGGTCTTACACTGCAAATGTAAAGACAATTCAAAAGGAGATAATCAGAGGGGATGAGGCAAGTTTATTTCTGAAGATTGTACCATTTCTGGTCAACAAGAGTTGCCAGCAAACAACAATAAATAGCATAAAGTCAACTCTAGCACTTTTGGACCCAAACCAATAACCAAAAGAAAAAAGTCAAAATTTGAAGGAATTCTGCTCCAGTTCAGAGCATCTCTGCAAATGCACCACAAAGCAACAGGCCAACAGCAATTGGGAATTTGAAAAGGATATGATTAGCAGTTTCAAATTCCCAACACAACTAATAAAATTCAGAGCCATTGCAGTTCCTTTTCTCAACTGGACTGCAGATTGGATTCTATCTTTATAAGCCAACCAGAGAAAATGTTTCATTTTCATGGAGAAAGGAGCTGATCAAATATCCTTCAACCTCAGATCAGTCACATCAGCAAAAGAAAAAGAAAAAAAAAAGAGGCTATCAACATGTCCTGAAGTGGTAATTTCATCGAGATGTAGGAGAGTATGCATTATAAGACCATAGGACACTATGAAGAAACAATTCATGCAGCAAAATAACACTTGTAGCTTCCTGAATACAAATTCATGTACCATCAGTTTTCAGGCAAGAAGTTTAATTGCATACATAATGCATACTGCAATTAAGAAGTTTGTAAGCTTAAACCTCATCCAATACATAGAGATTGCACCATATATAATTCAGAAGCAGGCAAGGGCAATAGAAAGAAGTCTTAAAAAGAGGAACCACCTCATTCAGCAGGCATCACACGAAAGGCGAAGCATTCACGACATAGTCCAGCAGAGATGGAAAGAATGCATGCGGAACAAGGCTTGCTCTAAGCTTCACTGGAGTAATACTGAGGCCGTCATTATCATGTGGCAAACTCGCCAACAGCTTGCCATCAGTACCAATGTAGAGCATGGCTCGTTTGCAGTTAACCAGCACAAGCACATCCCCATCCTCGGAAGAAACCATCACACTGTAAAGATCACGCTTCACATCAAGCTCTCTCCTGATCTCTAGAACTGGCAATTCAACCCGGTACTTGAGAGACCAGACCTCTCTCTCATAATCCTCCAGCACCCAGATATCTACAAATGTCGCACCATCGTCACAGCAGTACATGCCGAGCATACAATTAATCTCAAACAGGCCATGAAACGCTCTCCACACCGCCTTGCCGAATGGAGACCGCATCCACCGGAACGACTCGGCTGTAATGTCAAACGCCAAAATCATATCTTCGATTCTCTTATACCAATGCAGGCTCCCATGCAGCAGCACAGATGCGCCGTTTGCCTCCGCCTCTGGCCACCCAATGCACCTCGGCAAATCGCCAGAGCCCAATGTGTAGACGTAGCAGGCGTTTCTATCGCCGGGGATCAGAACATCAACGAGCCGCTCCGAAGCAGGTAGCTCTATCCTGTAGAGCAGAAGCCGATACTCGCCGGTGGGGCGGTGCCAGTACAAGCCCATGAGCATGAACCCGGTGAGCAGCGGCAGCGGGATGTCACCGGACTGACGCGTGGTCGGGTTACAGATCGAGAAGCGGACACTGGAATGGGCACCGATGGCCCTCTTCCTCCAGAGGACAAGGATGCCGTCGCAGGAGGCCTCCTCCACGCAGAAGACGGAGCTGTCGAACCGGGCGACGGGGTGGAGGAGCCGGCGCCGGCGGTCGACGGCGAGGACGTCGCCGTTTCTGCAGCCGGTGACGAGGGGGAGGGAGGGCTGGTGGCGGTGGTGGGCGAGGAGGAAGTCGCGGGTGGAGGTGAGGCGGCGCCATGCGCGGCACACCAGGCGGCAGCGGAGGAGGGGTTTGGGGGGAAGCCGTACCAGGATGTCCCAGACGACGAGGACCTCCGGGAGGGCGACGCCGGAGCTGAGCGGCGGCGGGAGTCCTGTCGCCGCCGCCGCCGCCGCCAGTGGAGTGAAGTGACGAGGCCAGAGACGGGCTGACGGC
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| CDS seq | ATGCTCATGGGCTTGTACTGGCACCGCCCCACCGGCGAGTATCGGCTTCTGCTCTACAGGATAGAGCTACCTGCTTCGGAGCGGCTCGTTGATGTTCTGATCCCCGGCGATAGAAACGCCTGCTACGTCTACACATTGGGCTCTGGCGATTTGCCGAGGTGCATTGGGTGGCCAGAGGCGGAGGCAAACGGCGCATCTGTGCTGCTGCATGGGAGCCTGCATTGGTATAAGAGAATCGAAGATATGATTTTGGCGTTTGACATTACAGCCGAGTCGTTCCGGTGGATGCGGTCTCCATTCGGCAAGGCGGTGTGGAGAGCGTTTCATGGCCTGTTTGAGATTAATTGTATGCTCGGCATGTACTGCTGTGACGATGGTGCGACATTTGTAGATATCTGGGTGCTGGAGGATTATGAGAGAGAGGTCTGGTCTCTCAAGTACCGGGTTGAATTGCCAGTTCTAGAGATCAGGAGAGAGCTTGATGTGAAGCGTGATCTTTACAGTGTGATGGTTTCTTCCGAGGATGGGGATGTGCTTGTGCTGGTTAACTGCAAACGAGCCATGCTCTACATTGGTACTGATGGCAAGCTGTTGGCGAGTTTGCCACATGATAATGACGGCCTCAGTATTACTCCAGTGAAGCTTAGAGCAAGCCTTGTTCCGCATGCATTCTTTCCATCTCTGCTGGACTATGTCGTGAATGCTTCGCCTTTCGTGTGA
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| Protein seq | MLMGLYWHRPTGEYRLLLYRIELPASERLVDVLIPGDRNACYVYTLGSGDLPRCIGWPEAEANGASVLLHGSLHWYKRIEDMILAFDITAESFRWMRSPFGKAVWRAFHGLFEINCMLGMYCCDDGATFVDIWVLEDYEREVWSLKYRVELPVLEIRRELDVKRDLYSVMVSSEDGDVLVLVNCKRAMLYIGTDGKLLASLPHDNDGLSITPVKLRASLVPHAFFPSLLDYVVNASPFV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g11440 | LOC_Os04g11440.1 | Chr04 | 6255954 | 6258351 | - | MSU_osa1r7 | ||
| CDS seq | ATGCTCATGGGCTTGTACTGGCACCGCCCCACCGGCGAGTATCGGCTTCTGCTCTACAGGATAGAGCTACCTGCTTCGGAGCGGCTCGTTGATGTTCTGATCCCCGGCGATAGAAACGCCTGCTACGTCTACACATTGGGCTCTGGCGATTTGCCGAGGTGCATTGGGTGGCCAGAGGCGGAGGCAAACGGCGCATCTGTGCTGCTGCATGGGAGCCTGCATTGGTATAAGAGAATCGAAGATATGATTTTGGCGTTTGACATTACAGCCGAGTCGTTCCGGTGGATGCGGTCTCCATTCGGCAAGGCGGTGTGGAGAGCGTTTCATGGCCTGTTTGAGATTAATTGTATGCTCGGCATGTACTGCTGTGACGATGGTGCGACATTTGTAGATATCTGGGTGCTGGAGGATTATGAGAGAGAGGTCTGGTCTCTCAAGTACCGGGTTGAATTGCCAGTTCTAGAGATCAGGAGAGAGCTTGATGTGAAGCGTGATCTTTACAGTGTGATGGTTTCTTCCGAGGATGGGGATGTGCTTGTGCTGGTTAACTGCAAACGAGCCATGCTCTACATTGGTACTGATGGCAAGCTGTTGGCGAGTTTGCCACATGATAATGACGGCCTCAGTATTACTCCAGTGAAGCTTAGAGCAAGCCTTGTTCCGCATGCATTCTTTCCATCTCTGCTGGACTATGTCGTGAATGCTTCGCCTTTCGTGTGA
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| Protein seq | MLMGLYWHRPTGEYRLLLYRIELPASERLVDVLIPGDRNACYVYTLGSGDLPRCIGWPEAEANGASVLLHGSLHWYKRIEDMILAFDITAESFRWMRSPFGKAVWRAFHGLFEINCMLGMYCCDDGATFVDIWVLEDYEREVWSLKYRVELPVLEIRRELDVKRDLYSVMVSSEDGDVLVLVNCKRAMLYIGTDGKLLASLPHDNDGLSITPVKLRASLVPHAFFPSLLDYVVNASPFV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.197798 | 0.0 | 0.280677 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0191600 | RBH | 0.517696 | 0.0 | 1.422925 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0191600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0003630 | RBH | 0.057310 | 3.632566 | 2.368385 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0004160 | SBH | 0.237027 | 2.561781 | 0.545430 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0003680 | SBH | 0.285717 | 0.0 | 3.159131 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0003760 | RBH | 0.016724 | 0.028729 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003680 | RBH | 1.712249 | 1.820239 | 6.803564 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0091200 | RBH | 1.0350435 | 3.7443655 | 8.616605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0003780 | RBH | 0.033433 | 0.138377 | 0.546915 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0094100 | SBH | 1.399276 | 6.8235005 | 5.890034 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0003600 | SBH | 0.031123 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0003840 | RBH | 0.000000 | 3.187945 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0003650 | SBH | 0.854452 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0003550 | RBH | 0.066809 | 0.086527 | 0.240648 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0003700 | SBH | 0.084273 | 1.943489 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G003890 | RBH | 0.0 | 0.967468 | 0.136636 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0003690 | RBH | 0.344507 | 1.432785 | 1.850873 |
