Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g10860 | OGI:01011440 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:5890687-5893234 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGACTTCGAGCTATGTGAGCCTAGAGGATCAGGAAGAGTATAAAATGATGGGTTTTTTCAAGCGAGGAGGAAGGTTACAAATTCTATTTAGACTATGCAAAGGGTAAGGGTTTCAGTGTGAGGAAAAACAACTTGAAGCGGAAGGACGGTGAGATTATATGGAGGCAATTCGTATGCTCAAGTGAAGGGTACAGGGAGTTGAAGCACTTTGAGAGGATAGAGCGGAAAAGGGAGCCATGGGCACTGACCCACTGTGGTTGCTTAGCTAAGCTTGAGATTGAGTGGAACGAGGAGAAGGGGGTGTGGTTTGTTAAGGAGTTTAATAACCAACATACGCACGAACTTGCAAATCCTGACCATGTTGCTTTTTTAGGAGTTCATCGTGTGGTGAGTGATTCTAAGAAAGCCCAAGCGGTCGAGCTTCGCATGAGTGGCCTTAGGCCCTTTCAAATCATGGAGGTTATGGAGAATAACCACGATGAGTCGGAAGAGGTTGGTTTTGTGATGAAGGACCTTTATAATTTCTTTACTCGGTACGAGATGAAGAATATCAAGGGTCGTGATGCTGAAGATATGTTGAAATATCTAACAAGGAAGCAAGAAGAAGATCCAGAATTTTTCTTCAAATACACCACGGATGAGGAAGGGCGTCTTAGGAATGTGTTTTGGGCAGATGCTGAATCTGGTTTAAACTATGCTGCTTTTGGTGGTGTTGTTATTTTCGATAGCACTTACCGGGTGAACAAGTACAATCTTCCTTTCATTCCTTTCATAGGAGTTAACCACCATAGAAGTACAACAATTTTTGGGTGCGGAATTCTATCCAATGAGTCTGTCAACTCTTACTATTGGCTCCTTGAGACTTTTTTGGAGGCAATGCGTCAAGTGCATCCAAAATCATTAATTACCGATGGCGACCTAGCAATGGCGAATGCTATCAGTAAGGTAATGCCGGGTGCTTACCATAGATTGTGTATTTGGCATATAGAGGAGAATATGAGTCGTCACCTTCGTAAGCCAACACTTGATGAGCTAAGAAAATTAATTTATGCGAGTATGGATGAGGAGGAGTTCGAGAGACGCTTGGGCTGATTTTAAGGAGAATGGAGGCATGGGAAATGGACAATGGATCGCTCTGATGTACCTCCTTAGGGAGAATGTGGGCTACTGCCTATACAGATGGGAAATACTTGTTGGGTATGCGCAGCAACCAACGTAGTGAGTCACTGAACTCAAAGCTTCACACCCTTCTAAAGAGAAACATGTCACTAATGTGCTTAGTCAAACATGTTAAGTTGTGCATACAACATCTGCGTAAGAAGGAGGCTCAGTTGGATGCTAAGTGTACCAATTCGCTCCCTTTTTGTAGAATAGACGCCGACCCATTGGAGAAAGACGCTGCCCGTATATTCACAGCAGTCGTGTTCAAGAATGTCCGTGCACAGATACGGCTAATTGCTGGACTTGAAGTCATAAGTGGGACTAATCAAGATGGTTCGTCACTGTATGTTGTTGGTTTGAAGGACGATAATGAGGTGTGAGATGAAGTGAGAGTTACTTTTAAAGGCTAGGCGTTGGAAGGTGTGGAATGTCACTGCCGGAAGATGGAGTGCGAAGACATCCCTTGCTCAGACATTTTTGTTGTACTCAAGTTCCTTGGTTTTGACACCATCCCTCGTTGTTGTGTCGTGGATAGGTGGACAATGGGAGCAAAGGCGGCATTTAGGTCAGACAGGAATACCGATCCTAATGTGTGGTCTAAACACATGGTTCGTTTTCGTAGCCTCCGAAATCTGGGTAGTGATGCTTTCTTTGAGGCCGCTAGGAACCCTGAGCAGACAGAAAAGGCGATGGATTTCTTAAAGGGGATTTTGGATAAAGGATCTTCATCCCATGAGAACATCGTGGCCGGAGATTTTGGTCCTATGCCAACTCACTTTTTGTCTAATAACCAGCCATTAGAGAAGAGGGTCAGTGATCCTGATGAGATTAGGGCAAAAGGAGCTCCATCGAAGAGACGAAGGCCATTCCGTGAGACATTGCACACAAAAAACTAATAAGGTTATTGTGCCTCACAAACTTTGTATCTTTTGTATTAATGGCATTGTTTTTTATTGGATTAATTTAATCTTTTCTCAAGATGTGCATATTAAGTGTTTTCCCTGGTGCATGCGTTTGGATTAGAAAAGTTGTCTACTAAACTTTCTTATACAGTTTGTGTTGAATGATATGTTACTGTTCCTGGTTCAGAGGTAGCAGTTGTCTTCTCATAGAAATCCCTGGAAGTCGAGAGAGTACTCCCACTTGATAAAATGGAAGTTTATTTTGGTGTTGAGTTTTGTTCAGAGTTATTACGCTATTTTTTCATGGTGGATGTATTTGTGTCTTTCTTACCGTGTGTAACATTCATAGTACATGTACATATTGCAGAATCTCTTCAGTTTGTCACGTTAATAACAAAAAATCGAAATAACCTTACTGATAAATTCTTTGTTTATGCAGGCATTTTTTGATATCCATGATGCCCACATGTGGGATTTGTCTTGA
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| CDS seq | ATGACTTCGAGCTATGAGGAAGGTTACAAATTCTATTTAGACTATGCAAAGGGTAAGGGTTTCAGTGTGAGGAAAAACAACTTGAAGCGGAAGGACGGTGAGATTATATGGAGGCAATTCGTATGCTCAAGTGAAGGGTACAGGGAGTTGAAGCACTTTGAGAGGATAGAGCGGAAAAGGGAGCCATGGGCACTGACCCACTGTGGTTGCTTAGCTAAGCTTGAGATTGAGTGGAACGAGGAGAAGGGGGTGTGGTTTGTTAAGGAGTTTAATAACCAACATACGCACGAACTTGCAAATCCTGACCATGTTGCTTTTTTAGGAGTTCATCGTGTGGTGAGTGATTCTAAGAAAGCCCAAGCGGTCGAGCTTCGCATGAGTGGCCTTAGGCCCTTTCAAATCATGGAGGTTATGGAGAATAACCACGATGAGTCGGAAGAGGTTGGTTTTGTGATGAAGGACCTTTATAATTTCTTTACTCGGTACGAGATGAAGAATATCAAGGGTCGTGATGCTGAAGATATGTTGAAATATCTAACAAGGAAGCAAGAAGAAGATCCAGAATTTTTCTTCAAATACACCACGGATGAGGAAGGGCGTCTTAGGAATGTGTTTTGGGCAGATGCTGAATCTGGTTTAAACTATGCTGCTTTTGGTGGTGTTGTTATTTTCGATAGCACTTACCGGGTGAACAAGTACAATCTTCCTTTCATTCCTTTCATAGGAGTTAACCACCATAGAAGTACAACAATTTTTGGGTGCGGAATTCTATCCAATGAGTCTGTCAACTCTTACTATTGGCTCCTTGAGACTTTTTTGGAGGCAATGCGTCAAGTGCATCCAAAATCATTAATTACCGATGGCGACCTAGCAATGGCGAATGCTATCAGTAAGTTGTGCATACAACATCTGCGTAAGAAGGAGGCTCAGTTGGATGCTAAGTGTACCAATTCGCTCCCTTTTTGTAGAATAGACGCCGACCCATTGGAGAAAGACGCTGCCCGTATATTCACAGCAGTCGTGTTCAAGAATGTCCGTGCACAGATACGGCTAATTGCTGGACTTGAAGTCATAAGTGGGACTAATCAAGATGGTTCGTCACTGTATGTTGTTGGTTTGAAGGACGATAATGAGGCGTTGGAAGGTGTGGAATGTCACTGCCGGAAGATGGAGTGCGAAGACATCCCTTGCTCAGACATTTTTGTTGTACTCAAGTTCCTTGGTTTTGACACCATCCCTCGTTGTTGTGTCGTGGATAGGTGGACAATGGGAGCAAAGGCGGCATTTAGGTCAGACAGGAATACCGATCCTAATGTGTGGTCTAAACACATGGTTCGTTTTCGTAGCCTCCGAAATCTGGGTAGTGATGCTTTCTTTGAGGCCGCTAGGAACCCTGAGCAGACAGAAAAGGCGATGGATTTCTTAAAGGGGATTTTGGATAAAGGATCTTCATCCCATGAGAACATCGTGGCCGGAGATTTTGGTCCTATGCCAACTCACTTTTTGTCTAATAACCAGCCATTAGAGAAGAGGGCATTTTTTGATATCCATGATGCCCACATGTGGGATTTGTCTTGA
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| Protein seq | MTSSYEEGYKFYLDYAKGKGFSVRKNNLKRKDGEIIWRQFVCSSEGYRELKHFERIERKREPWALTHCGCLAKLEIEWNEEKGVWFVKEFNNQHTHELANPDHVAFLGVHRVVSDSKKAQAVELRMSGLRPFQIMEVMENNHDESEEVGFVMKDLYNFFTRYEMKNIKGRDAEDMLKYLTRKQEEDPEFFFKYTTDEEGRLRNVFWADAESGLNYAAFGGVVIFDSTYRVNKYNLPFIPFIGVNHHRSTTIFGCGILSNESVNSYYWLLETFLEAMRQVHPKSLITDGDLAMANAISKLCIQHLRKKEAQLDAKCTNSLPFCRIDADPLEKDAARIFTAVVFKNVRAQIRLIAGLEVISGTNQDGSSLYVVGLKDDNEALEGVECHCRKMECEDIPCSDIFVVLKFLGFDTIPRCCVVDRWTMGAKAAFRSDRNTDPNVWSKHMVRFRSLRNLGSDAFFEAARNPEQTEKAMDFLKGILDKGSSSHENIVAGDFGPMPTHFLSNNQPLEKRAFFDIHDAHMWDLS |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g10860 | LOC_Os04g10860.1 | Chr04 | 5890687 | 5893234 | + | MSU_osa1r7 | ||
| CDS seq | ATGACTTCGAGCTATGAGGAAGGTTACAAATTCTATTTAGACTATGCAAAGGGTAAGGGTTTCAGTGTGAGGAAAAACAACTTGAAGCGGAAGGACGGTGAGATTATATGGAGGCAATTCGTATGCTCAAGTGAAGGGTACAGGGAGTTGAAGCACTTTGAGAGGATAGAGCGGAAAAGGGAGCCATGGGCACTGACCCACTGTGGTTGCTTAGCTAAGCTTGAGATTGAGTGGAACGAGGAGAAGGGGGTGTGGTTTGTTAAGGAGTTTAATAACCAACATACGCACGAACTTGCAAATCCTGACCATGTTGCTTTTTTAGGAGTTCATCGTGTGGTGAGTGATTCTAAGAAAGCCCAAGCGGTCGAGCTTCGCATGAGTGGCCTTAGGCCCTTTCAAATCATGGAGGTTATGGAGAATAACCACGATGAGTCGGAAGAGGTTGGTTTTGTGATGAAGGACCTTTATAATTTCTTTACTCGGTACGAGATGAAGAATATCAAGGGTCGTGATGCTGAAGATATGTTGAAATATCTAACAAGGAAGCAAGAAGAAGATCCAGAATTTTTCTTCAAATACACCACGGATGAGGAAGGGCGTCTTAGGAATGTGTTTTGGGCAGATGCTGAATCTGGTTTAAACTATGCTGCTTTTGGTGGTGTTGTTATTTTCGATAGCACTTACCGGGTGAACAAGTACAATCTTCCTTTCATTCCTTTCATAGGAGTTAACCACCATAGAAGTACAACAATTTTTGGGTGCGGAATTCTATCCAATGAGTCTGTCAACTCTTACTATTGGCTCCTTGAGACTTTTTTGGAGGCAATGCGTCAAGTGCATCCAAAATCATTAATTACCGATGGCGACCTAGCAATGGCGAATGCTATCAGTAAGTTGTGCATACAACATCTGCGTAAGAAGGAGGCTCAGTTGGATGCTAAGTGTACCAATTCGCTCCCTTTTTGTAGAATAGACGCCGACCCATTGGAGAAAGACGCTGCCCGTATATTCACAGCAGTCGTGTTCAAGAATGTCCGTGCACAGATACGGCTAATTGCTGGACTTGAAGTCATAAGTGGGACTAATCAAGATGGTTCGTCACTGTATGTTGTTGGTTTGAAGGACGATAATGAGGCGTTGGAAGGTGTGGAATGTCACTGCCGGAAGATGGAGTGCGAAGACATCCCTTGCTCAGACATTTTTGTTGTACTCAAGTTCCTTGGTTTTGACACCATCCCTCGTTGTTGTGTCGTGGATAGGTGGACAATGGGAGCAAAGGCGGCATTTAGGTCAGACAGGAATACCGATCCTAATGTGTGGTCTAAACACATGGTTCGTTTTCGTAGCCTCCGAAATCTGGGTAGTGATGCTTTCTTTGAGGCCGCTAGGAACCCTGAGCAGACAGAAAAGGCGATGGATTTCTTAAAGGGGATTTTGGATAAAGGATCTTCATCCCATGAGAACATCGTGGCCGGAGATTTTGGTCCTATGCCAACTCACTTTTTGTCTAATAACCAGCCATTAGAGAAGAGGGCATTTTTTGATATCCATGATGCCCACATGTGGGATTTGTCTTGA
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| Protein seq | MTSSYEEGYKFYLDYAKGKGFSVRKNNLKRKDGEIIWRQFVCSSEGYRELKHFERIERKREPWALTHCGCLAKLEIEWNEEKGVWFVKEFNNQHTHELANPDHVAFLGVHRVVSDSKKAQAVELRMSGLRPFQIMEVMENNHDESEEVGFVMKDLYNFFTRYEMKNIKGRDAEDMLKYLTRKQEEDPEFFFKYTTDEEGRLRNVFWADAESGLNYAAFGGVVIFDSTYRVNKYNLPFIPFIGVNHHRSTTIFGCGILSNESVNSYYWLLETFLEAMRQVHPKSLITDGDLAMANAISKLCIQHLRKKEAQLDAKCTNSLPFCRIDADPLEKDAARIFTAVVFKNVRAQIRLIAGLEVISGTNQDGSSLYVVGLKDDNEALEGVECHCRKMECEDIPCSDIFVVLKFLGFDTIPRCCVVDRWTMGAKAAFRSDRNTDPNVWSKHMVRFRSLRNLGSDAFFEAARNPEQTEKAMDFLKGILDKGSSSHENIVAGDFGPMPTHFLSNNQPLEKRAFFDIHDAHMWDLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g28580 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0018080 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0018230 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0003460 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0083200 | SBH | 0 | 0.029045 | 0.030088 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0012290 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0085400 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0011960 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0011840 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0015470 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0011850 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G012040 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0011990 | SBH | 0.0 | 0.0 | 0.0 |
