Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g08836 | OGI:04016240 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:4897173-4897791 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCAAAGTAAGGACACCTGTGATTTAATCTTATGGCTGCAGGAAATAATTATTGCAACGGTAGACAATCCATCGAATGCTGTAGAGTGGGCACTGGCCGAGATGGTAAACAATCCAAATGTTATGAAGAAGGCAGTGGACGAGCTTGATGTCGTTGTCGGTAAGGAAAGACTTGTCGAGGAATCCGACATTCAGAACCTCACATACCTCAAGGCATGTATCCGGGAGGCGTTCCGCATTCACCCCTACCACCCGTTCAATCCACCCCATGTTGCCATATCTGACACGATCATCGCCGGATACTTGATACCAAAGGATAGCCATGTAATGCTAAGCCGAATTGGGCTTGGCCGGAACCCTAGAGTATGGGTTAACCCACTTGAATTTCGACCAGAGCGACATCTGAACAATGCTACTAGTACTATGGTGCTAGCTGAGCCAGAGTTGCGGTTTGTATCATTCGGTGCTGGTAGGCGTGGCTGCCCTCTGCCGTGTCACTTGGCACTTCAATTACAATGATGCTATTCGCAAGGCTTCTACAAGGGTTCACTTGGAGCATACCCCCTGGTGCAGACAAGATAGAGCTTCAGGAGTCAGCTTCGAGCCTCCAATTGTCTAA
More
|
||||||||||
| CDS seq | ATGCAAAGTAAGGACACCTGTGATTTAATCTTATGGCTGCAGGAAATAATTATTGCAACGGTAGACAATCCATCGAATGCTGTAGAGTGGGCACTGGCCGAGATGGTAAACAATCCAAATGTTATGAAGAAGGCAGTGGACGAGCTTGATGTCGTTGTCGGTAAGGAAAGACTTGTCGAGGAATCCGACATTCAGAACCTCACATACCTCAAGGCATGTATCCGGGAGGCGTTCCGCATTCACCCCTACCACCCGTTCAATCCACCCCATGTTGCCATATCTGACACGATCATCGCCGGATACTTGATACCAAAGGATAGCCATGTAATGCTAAGCCGAATTGGGCTTGGCCGGAACCCTAGAGTATGGGTTAACCCACTTGAATTTCGACCAGAGCGACATCTGAACAATGCTACTAGCGTGGCTGCCCTCTGCCGTGTCACTTGGCACTTCAATTACAATGATGCTATTCGCAAGGCTTCTACAAGGGTTCACTTGGAGCATACCCCCTGGTGCAGACAAGATAGAGCTTCAGGAGTCAGCTTCGAGCCTCCAATTGTCTAA
More
|
||||||||||
| Protein seq | MQSKDTCDLILWLQEIIIATVDNPSNAVEWALAEMVNNPNVMKKAVDELDVVVGKERLVEESDIQNLTYLKACIREAFRIHPYHPFNPPHVAISDTIIAGYLIPKDSHVMLSRIGLGRNPRVWVNPLEFRPERHLNNATSVAALCRVTWHFNYNDAIRKASTRVHLEHTPWCRQDRASGVSFEPPIV |
||||||||||
| Function | Tyrosine N-monooxygenase [UniProtKB/Swiss-Prot:Q43135] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g08836 | LOC_Os04g08836.1 | Chr04 | 4897173 | 4897791 | + | MSU_osa1r7 | ||
| CDS seq | ATGCAAAGTAAGGACACCTGTGATTTAATCTTATGGCTGCAGGAAATAATTATTGCAACGGTAGACAATCCATCGAATGCTGTAGAGTGGGCACTGGCCGAGATGGTAAACAATCCAAATGTTATGAAGAAGGCAGTGGACGAGCTTGATGTCGTTGTCGGTAAGGAAAGACTTGTCGAGGAATCCGACATTCAGAACCTCACATACCTCAAGGCATGTATCCGGGAGGCGTTCCGCATTCACCCCTACCACCCGTTCAATCCACCCCATGTTGCCATATCTGACACGATCATCGCCGGATACTTGATACCAAAGGATAGCCATGTAATGCTAAGCCGAATTGGGCTTGGCCGGAACCCTAGAGTATGGGTTAACCCACTTGAATTTCGACCAGAGCGACATCTGAACAATGCTACTAGCGTGGCTGCCCTCTGCCGTGTCACTTGGCACTTCAATTACAATGATGCTATTCGCAAGGCTTCTACAAGGGTTCACTTGGAGCATACCCCCTGGTGCAGACAAGATAGAGCTTCAGGAGTCAGCTTCGAGCCTCCAATTGTCTAA
More
|
|||||||
| Protein seq | MQSKDTCDLILWLQEIIIATVDNPSNAVEWALAEMVNNPNVMKKAVDELDVVVGKERLVEESDIQNLTYLKACIREAFRIHPYHPFNPPHVAISDTIIAGYLIPKDSHVMLSRIGLGRNPRVWVNPLEFRPERHLNNATSVAALCRVTWHFNYNDAIRKASTRVHLEHTPWCRQDRASGVSFEPPIV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0174100 | SBH | 0.0 | 0.0 | 1.751022 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0174100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0002660 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0003000 | SBH | 0.0 | 0.0 | 0.261729 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0002720 | SBH | 0.0 | 0.0 | 0.293840 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002880 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0002800 | SBH | 0.795859 | 0.0 | 65.353134 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0074300 | SBH | 0.0051045 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002950 | SBH | 0.0 | 0.0 | 0.433914 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0074300 | SBH | 1.329293 | 0 | 0.1258275 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002780 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002960 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002850 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002650 | SBH | 0.0 | 0.0 | 2.285650 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0002780 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002980 | RBH | 0.0 | 0.0 | 0.858560 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002850 | SBH | 0.0 | 0.0 | 3.762681 |
