Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g08180 | OGI:04014100 | 7/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:4349134-4352198 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCCACGCTCCCCCCCCCCCCCTCCTCCTCCTCCATCTCCGCCCCTCGTCTCACCCCACCCATGGCGCCGCATGCCGCGAGCAGGATGCTGCTGTCGCTGGCCCGGGACGGCGCGGGGCGACGGTGGCTCCGCATCCGCGGTGGGGATTCGAGGCCAATCTCGGTTCACAGGTGGACCTGCAATTGTTAGGGGTAATAAAAAATAAAATAAAATCCATTCATAGATAGGCGAGCATTTGGAAATTTTGTTTAACTCAAATTGATTTTCAAGTGTAGGTTTGTGACGGATTGTGATTATTCTGGTTGTGAAATTTCTGGTGATGAGGACTCCGGTCGCGGGTTGCTGCTCCATTGGAGGTAAGTAGTACAATAGTTTTGTTACGGAATTGTTTCCATTGGTTTAGACAAATCTATCAGATGTTACACAACTTTTTCCCCCCTGTTTCAATTTAAGTTCTCACTGCATTTATCGAAGAGAATCTTGCTCCTCTATTCTAGTGACAGTTGCCTTCTTTGTGTTGAATAATCAAAGAATATTTAGCTTTTCTTGTTTCAACTTTCAACAGTTCGAAACATGATAGAAGCAACAACGATTGTGATACTAATGGAGGCGCATTTGAAGGTTATTTATCACTTAAACTAGGTTTTTCTGCTGATTTTCTTTCTTAAGTAATATCTGGAACGTTGAGTTTCAACGCTTTTGGTCAAATCCACATGAATCTGTATCTTTCTTTTGAATATAAATTACTCAATTGTACAGTTAATTAGTGGTTGATAAAAATCTGGCTTCAGTTTATACATCATTGTTCATTCATGCTTTCTTTAGAGCCCGATACTTATTTATGAAAATAAAAATATGTCTCTTTTCAAAGTTGCTGCAATATTTAAAGATTTTATTGGGAAGGAAAAGTTTTGTTGCTTGCAGGGTCAGCTAACCACCTTGCCATCTGAATTTTGATTACATATGCCCCCGAGCAATTCAAAGAGAAGACAGTGGAAGCATTACCTCTTCAACTTATGCAACATTCAGCTTTCACAGCAGCTTCCTCGTCAAGTGCATCAAGGTTCAGATTTTGCCCTAGTTTCTCCTGAGTTACGTATGTGGTAGCTATGTCTGGCAATATGCCACTGCCAAGTTCACCGAGAACATGGCTGTGTAAGGAGGGCTTCCTTGAGATGTATTTTTTTGGTATGTCATATTGCCAGCTCTTTCATCGGTGAACTATCTAAGAAGCTGGCAGAAAAGAACAAATGGCAGACTCGCCCCAATCACAAGATGTATGAGGATCAATGGGTGGTTGCTAATTAACAACAATATGCATGCAGTGGCGGCTGCCCAAATTCTAGTTTCTTGCAACTTTGCCTCTGGTACTGTTTTCTCCTGTAACTGACTTCTCTTCTATCATATTTTGCCCTGCTACTTGAAATAAAAATCAGGTACATCCCTTCTTTATGTATAAAATTTCTTTCATTGTAGGTGAAAATTTATTTGATTTTAGAATCTTTCTCCTGATTATATGAGACTGTGGTGCTAGATTTTATAACCTGTGAAGATCACAACTGAAAGGCTGAAAGCAATGTTTTCAGGAACAATGTTATTCTTGTTCATTTTTTAGATTGGAACAATTATGTGGATTGTTGACCATGTATACTCCAATAGTTCACACATTCCAATTTTCCAAGAAACCAGGCATTAGTGGTGATAATTGTTAAGGTACATGCTAATTAAGTACATTTGGTTAATTGGATCTGTGTGACTGAAAGGAATAATGATTATTTTCCTTTTTCAGCATAGCCAATATACTTGAATATCAGATCTGTCATGGCAATATGGCATAGATAATTGAATAAATGATCAACTCCATTATCTGGTGTTCGAATAGATTTATGTTCCTGGAGCATATATTCGGTGTCTTTCATATAGCATTGGTCGAGTAATATACTACCAAGAGAAGATGACAGAATGGAAGAGTGTACAGAGATTTATGAAATGGGCAGCTAGATCAAGTCAGTAAGAAAGGAAAAGAAATTGAGGTATTGATCTTCTCGAGACGGCTATTGTGTTCATTTCACTTCAGTGGCATGTTAATGTTTTAGTTGGTTCCATGGGACAATCCTTTTTTTATGTTGATAGTCGGTACTGGATTATAAAGGGCAAGGTATGCATTTGCATGAATTCTGAGAGAAGCTATGGACTTCATGAGAGAAGCTATGGATCAACATATATAGTTTAAACAAAACTTAAAAGAGCCTGGGAGTACCTGTTGAATTTTTTTTTGAGGGAAACTACGGCAGACGTTTGACGCCGGCCTGAACTTTATTGATAGTTGTTTGTAAAACAATGTACAAAGAAGGGAATTACAAAGGGGATAAGAAAAGCACTAAAGCGGGTTTTTTTTTGAAAGGAAAGCGGCAAGAGTATTGCCTAATATATTAGAGGAAGAGAAATTAAAAGTAAACACTAAAGCGGTTTTGAACTAGGGATTTTGTATTACAAGAAGATTATCAACCCACGAAATTAGGTGAGGTTTGAGGCGAAGGGGGCATCTGTGAGACCAGAGGAGGAGCTCGTTGATGCAGCACTGTCGGAGACAGCGATCGAATTCGTCCGTGTTGTTGAAGGCTTTGTTGTTTTGGCATTTCCAAATGTTCCAAGTGATCGCAAGGAGAATTGTGTGCCAAATCCGTTGAATTTTGAACATGCAGGTAATGAAAAAATATAAGTTGAAGTAAAGTGGAATTTATTGGTTGGAAAAACCAGCATGATGGAATCATGTAATCCATCTCGTGTATTTGCTTGTAGTAGCAAATTATTTAGTTAAGCCAAGTTCAATGTCTTTCTGCATATTGGCAAAGGTTGTAATTGATGATCATCTTTGATAGATTGGCTGGGGTCAGTTACTCTCTGCTACCTGTCATTTCGTTGGAGAATGGACTACATGGTGCATGGTTTGCAAGTGTCAGTCTACAGCAAATTAAGTTTTAGTCCCGTTGCAGTTTCATGGTACTTATTCAGCGTGTAATATCCCTGAAGACAAGCTAAGAGAATGGAGTTCCAGTTAG
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| CDS seq | ATGGCCACGCTCCCCCCCCCCCCCTCCTCCTCCTCCATCTCCGCCCCTCGTCTCACCCCACCCATGGCGCCGCATGCCGCGAGCAGGATGCTGCTGTCGCTGGCCCGGGACGGCGCGGGGCGACGGTGGCTCCGCATCCGCGGTGGGGATTCGAGGCCAATCTCGGTTCACAGGTTTGTGACGGATTGTGATTATTCTGGTTGTGAAATTTCTGGTGATGAGGACTCCGGTCGCGGGTTGCTGCTCCATTGGAGTTCGAAACATGATAGAAGCAACAACGATTGTGATACTAATGGAGGCGCATTTGAAGTTGGTTCCATGGGACAATCCTTTTTTTATGTTGATAGTCGGTACTGGATTATAAAGGGCAAGGTGAGGTTTGAGGCGAAGGGGGCATCTGTGAGACCAGAGGAGGAGCTCGTTGATGCAGCACTGTCGGAGACAGCGATCGAATTCGTCCGTGTTGTTGAAGGCTTTGTTGTTTTGGCATTTCCAAATGTTCCAAGTGATCGCAAGGAGAATTGTGTGCCAAATCCGTTGAATTTTGAACATGCAGCGTGTAATATCCCTGAAGACAAGCTAAGAGAATGGAGTTCCAGTTAG
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| Protein seq | MATLPPPPSSSSISAPRLTPPMAPHAASRMLLSLARDGAGRRWLRIRGGDSRPISVHRFVTDCDYSGCEISGDEDSGRGLLLHWSSKHDRSNNDCDTNGGAFEVGSMGQSFFYVDSRYWIIKGKVRFEAKGASVRPEEELVDAALSETAIEFVRVVEGFVVLAFPNVPSDRKENCVPNPLNFEHAACNIPEDKLREWSSS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g08180 | LOC_Os04g08180.1 | Chr04 | 4349134 | 4352198 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCACGCTCCCCCCCCCCCCCTCCTCCTCCTCCATCTCCGCCCCTCGTCTCACCCCACCCATGGCGCCGCATGCCGCGAGCAGGATGCTGCTGTCGCTGGCCCGGGACGGCGCGGGGCGACGGTGGCTCCGCATCCGCGGTGGGGATTCGAGGCCAATCTCGGTTCACAGGTTTGTGACGGATTGTGATTATTCTGGTTGTGAAATTTCTGGTGATGAGGACTCCGGTCGCGGGTTGCTGCTCCATTGGAGTTCGAAACATGATAGAAGCAACAACGATTGTGATACTAATGGAGGCGCATTTGAAGTTGGTTCCATGGGACAATCCTTTTTTTATGTTGATAGTCGGTACTGGATTATAAAGGGCAAGGTGAGGTTTGAGGCGAAGGGGGCATCTGTGAGACCAGAGGAGGAGCTCGTTGATGCAGCACTGTCGGAGACAGCGATCGAATTCGTCCGTGTTGTTGAAGGCTTTGTTGTTTTGGCATTTCCAAATGTTCCAAGTGATCGCAAGGAGAATTGTGTGCCAAATCCGTTGAATTTTGAACATGCAGCGTGTAATATCCCTGAAGACAAGCTAAGAGAATGGAGTTCCAGTTAG
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| Protein seq | MATLPPPPSSSSISAPRLTPPMAPHAASRMLLSLARDGAGRRWLRIRGGDSRPISVHRFVTDCDYSGCEISGDEDSGRGLLLHWSSKHDRSNNDCDTNGGAFEVGSMGQSFFYVDSRYWIIKGKVRFEAKGASVRPEEELVDAALSETAIEFVRVVEGFVVLAFPNVPSDRKENCVPNPLNFEHAACNIPEDKLREWSSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.084979 | 0.068709 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0163700 | RBH | 1.093454 | 0.721097 | 0.311514 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0163700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0002270 | RBH | 0.000000 | 0.000000 | 0.586426 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0002330 | SBH | 0.455620 | 0.000000 | 2.314983 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002490 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0068200 | RBH | 2.19578 | 4.828482 | 3.155125 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0066700 | RBH | 1.31209 | 1.4343925 | 2.2960325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0002360 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002420 | RBH | 0.000000 | 0.0 | 0.617582 |
