Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g07110 | OGI:04011460 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:3766125-3768464 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCTAGAGATGAAATCACTTTCCCAACCAAGTCCTTTTTCTTACTGCTGTACATGTATGAAACTTGCACGTTTTTTGGGATTACACGATGGACACTTGTGAGCAACTTGGTTGTTAACCATGTCCATGTAGACATTGAATTGAAGCTGGCGCAGCTAGCTAGCAACAATGGCGGGAGGAGGGGTGATGCACGTCCTGAACGAATGGGCGATCGAGATCCTGTTGCTGGTCAGCTTCTTCCTCCAGCTCGTCCTCCTCTTCTTCGCCGGGTTCCGCCGCGTGGGCGCCTCCGCCGTGCTGAAGCTGGTGGTCTGGCCGGCGTACCAGCTCGCCGACTTCGTCGCCACGTTCACCATCGGCCACCTCTCGGTCGGCCACGAGCGGCGGCGGCTGGTGGCGTTCTGGGCGCCGTTCCTGCTGCTCCACCTCGGCGGCCCGGACAACATCACTGCCTACTCCCTCGCCGACAACCAGCTCTGGAAGCGCCACCTCGTGTTCGGCCTCGTCCCCCAGGCGCTCGGCGCCGCCAACGTCATCTACCGCTCCTTCGCCGGCACCACCACCACGCTGCTCTCGGCCGCCATGCTCATGTTCGCCATTGGCGTCCTCAAGTACGGCGAGCGGACATGGGCGCTCAAGTACGCCAACCTCAGCAGCATCCGGAGCTCCGTCAATGTCGTCAAGACGCCGCCGGAGCGTCGGGTTCAGTACTACCCTCCGTCGTCGCTGCCTCGGCGTGACGGCGAGGAGGCCGACGAGGAGGAGCTTCTTCTTGTTGCTCACTTCCACTTCCATATCTGCAAGCGCGCCATGGCGGACTCGTCGGTGGAGGTGGACTCCGGCGACTACGACCCCAAGATTTTCTCCTACGGGTGGAAGGAGATGTGCCGGGTGGTGGAGATGGAGCTCTCCCTCATGTACGACATCCTCTACACCAAGGCGGCCGTGATGCACACCTGGTTCGGCTTCGCCATCCGCGTCGTCTCGCCGCTCGCCGTCGCCGCCGCGCTCGGCCTGTTCCGCCTCGAGGACGACCTCGGCAGCTACCGGCAGATCGACGTCGACATCACCTACGCGCTGCTGGTCGCCGCCTTCGTCCTGGAGACGACGTCGCTGTGCCGGGCGGTCGGGTCGACGTGGATCGCCGCCTTGCTGCAGACCACGCGGTGGGCGTGGCTCCGCCACGAGGCCCTCTGCACCGGCCGGTGGTCCCGCCTCCGCCGTGCCGTCGCGTCGCTCCGGCGGCTCGTCCACCGGGACGGGCACAGGTACTGGTCCGGCACCATGGGGCAGTTCAACGTGCTCCACTTCTGCACCCGCGACGGCGCGGCGGAGCGGCTCGGCGCGGCGGCGGAGAAGGCCGGGCTCGGGAGCTGGTGGAACAGGCACGTCAACGCCGGCAGCATCGTCATCTCCGACGAGGTCAAGGAGCTCGTGTTCGGACACATCCAGAACATGTTGAGAGCCGTGGACTCCATGTCGACCACCGAGCTCGACGCCATCAGGACAACGAGAGGCCAGCGCGCGCTCCGGCGCCACGGACTTGACGGCGACCTCGCCGCCAGCCTCGGCGAGGAGTTCCACCAAGGCATCCTCACCTGGCACGTCGCCACGGACATCTACCTCGCCGTCAGCGGCGGCGACCGATCTTCTCCAGCCAACGCCGGCGACAGGGCGGCGGCGGCGCGGCAGCTCACGGAGGCGGTCCGCGCGCTGTCCAACTACATGATGTTCCTCGTCGCCATACGCCCCGACATGCTCCCGGGCCTCGTGCTCCGGAGGCTGTACCAGGTGACATGCGAAGACATGGCCAGGATATGGCGGGAACGCAAGGACACCCACGAATCATCGTCTTCTTCCTCCAGCTGCCGCTTCATCGACGTCCTAAGCATGGTCACCAGGCTGTTCCAGCTGCACGTCGACGACCCGACCTCCGCCTCCAGGACGCCGGAGAGGAAGAAGCTGGCGGCGATGCTACGTGACAACGCCTACAATGGCGATCAGAATGTGAGGAGCCATGGCGTCTTCGCCGGCGCTCTGCTCGCCGACGAGCTGCTGCTGAAGGAGAAGGAGCGGCGGATGTCGTCGGACGGCGGCGGCGGGTGGTTGTTGCCGGTGATCTTCGAGGTGTGGGTGGAGATGCTGCTGTACGCCGGCAACCGGTGCAGCAGGGAGTCGCATGCGAAGCAGCTCAACAGTGGGGGTGAGCTCATCACGCTGGTGTGGCTGTTGGCTGAACACGCTGGGCTGTATCGTATAAACAAACCTAAGCAGCATTTCAAGTGTGCTGAATATGCTAGTGATATGGTATAGTTTACTGAGGTAGACTTTGTCTCATTTTT
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| CDS seq | ATGGCGGGAGGAGGGGTGATGCACGTCCTGAACGAATGGGCGATCGAGATCCTGTTGCTGGTCAGCTTCTTCCTCCAGCTCGTCCTCCTCTTCTTCGCCGGGTTCCGCCGCGTGGGCGCCTCCGCCGTGCTGAAGCTGGTGGTCTGGCCGGCGTACCAGCTCGCCGACTTCGTCGCCACGTTCACCATCGGCCACCTCTCGGTCGGCCACGAGCGGCGGCGGCTGGTGGCGTTCTGGGCGCCGTTCCTGCTGCTCCACCTCGGCGGCCCGGACAACATCACTGCCTACTCCCTCGCCGACAACCAGCTCTGGAAGCGCCACCTCGTGTTCGGCCTCGTCCCCCAGGCGCTCGGCGCCGCCAACGTCATCTACCGCTCCTTCGCCGGCACCACCACCACGCTGCTCTCGGCCGCCATGCTCATGTTCGCCATTGGCGTCCTCAAGTACGGCGAGCGGACATGGGCGCTCAAGTACGCCAACCTCAGCAGCATCCGGAGCTCCGTCAATGTCGTCAAGACGCCGCCGGAGCGTCGGGTTCAGTACTACCCTCCGTCGTCGCTGCCTCGGCGTGACGGCGAGGAGGCCGACGAGGAGGAGCTTCTTCTTGTTGCTCACTTCCACTTCCATATCTGCAAGCGCGCCATGGCGGACTCGTCGGTGGAGGTGGACTCCGGCGACTACGACCCCAAGATTTTCTCCTACGGGTGGAAGGAGATGTGCCGGGTGGTGGAGATGGAGCTCTCCCTCATGTACGACATCCTCTACACCAAGGCGGCCGTGATGCACACCTGGTTCGGCTTCGCCATCCGCGTCGTCTCGCCGCTCGCCGTCGCCGCCGCGCTCGGCCTGTTCCGCCTCGAGGACGACCTCGGCAGCTACCGGCAGATCGACGTCGACATCACCTACGCGCTGCTGGTCGCCGCCTTCGTCCTGGAGACGACGTCGCTGTGCCGGGCGGTCGGGTCGACGTGGATCGCCGCCTTGCTGCAGACCACGCGGTGGGCGTGGCTCCGCCACGAGGCCCTCTGCACCGGCCGGTGGTCCCGCCTCCGCCGTGCCGTCGCGTCGCTCCGGCGGCTCGTCCACCGGGACGGGCACAGGTACTGGTCCGGCACCATGGGGCAGTTCAACGTGCTCCACTTCTGCACCCGCGACGGCGCGGCGGAGCGGCTCGGCGCGGCGGCGGAGAAGGCCGGGCTCGGGAGCTGGTGGAACAGGCACGTCAACGCCGGCAGCATCGTCATCTCCGACGAGGTCAAGGAGCTCGTGTTCGGACACATCCAGAACATGTTGAGAGCCGTGGACTCCATGTCGACCACCGAGCTCGACGCCATCAGGACAACGAGAGGCCAGCGCGCGCTCCGGCGCCACGGACTTGACGGCGACCTCGCCGCCAGCCTCGGCGAGGAGTTCCACCAAGGCATCCTCACCTGGCACGTCGCCACGGACATCTACCTCGCCGTCAGCGGCGGCGACCGATCTTCTCCAGCCAACGCCGGCGACAGGGCGGCGGCGGCGCGGCAGCTCACGGAGGCGGTCCGCGCGCTGTCCAACTACATGATGTTCCTCGTCGCCATACGCCCCGACATGCTCCCGGGCCTCGTGCTCCGGAGGCTGTACCAGGTGACATGCGAAGACATGGCCAGGATATGGCGGGAACGCAAGGACACCCACGAATCATCGTCTTCTTCCTCCAGCTGCCGCTTCATCGACGTCCTAAGCATGGTCACCAGGCTGTTCCAGCTGCACGTCGACGACCCGACCTCCGCCTCCAGGACGCCGGAGAGGAAGAAGCTGGCGGCGATGCTACGTGACAACGCCTACAATGGCGATCAGAATGTGAGGAGCCATGGCGTCTTCGCCGGCGCTCTGCTCGCCGACGAGCTGCTGCTGAAGGAGAAGGAGCGGCGGATGTCGTCGGACGGCGGCGGCGGGTGGTTGTTGCCGGTGATCTTCGAGGTGTGGGTGGAGATGCTGCTGTACGCCGGCAACCGGTGCAGCAGGGAGTCGCATGCGAAGCAGCTCAACAGTGGGGGTGAGCTCATCACGCTGGTGTGGCTGTTGGCTGAACACGCTGGGCTGTATCGTATAAACAAACCTAAGCAGCATTTCAAGTGTGCTGAATATGCTAGTGATATGGTATAG
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| Protein seq | MAGGGVMHVLNEWAIEILLLVSFFLQLVLLFFAGFRRVGASAVLKLVVWPAYQLADFVATFTIGHLSVGHERRRLVAFWAPFLLLHLGGPDNITAYSLADNQLWKRHLVFGLVPQALGAANVIYRSFAGTTTTLLSAAMLMFAIGVLKYGERTWALKYANLSSIRSSVNVVKTPPERRVQYYPPSSLPRRDGEEADEEELLLVAHFHFHICKRAMADSSVEVDSGDYDPKIFSYGWKEMCRVVEMELSLMYDILYTKAAVMHTWFGFAIRVVSPLAVAAALGLFRLEDDLGSYRQIDVDITYALLVAAFVLETTSLCRAVGSTWIAALLQTTRWAWLRHEALCTGRWSRLRRAVASLRRLVHRDGHRYWSGTMGQFNVLHFCTRDGAAERLGAAAEKAGLGSWWNRHVNAGSIVISDEVKELVFGHIQNMLRAVDSMSTTELDAIRTTRGQRALRRHGLDGDLAASLGEEFHQGILTWHVATDIYLAVSGGDRSSPANAGDRAAAARQLTEAVRALSNYMMFLVAIRPDMLPGLVLRRLYQVTCEDMARIWRERKDTHESSSSSSSCRFIDVLSMVTRLFQLHVDDPTSASRTPERKKLAAMLRDNAYNGDQNVRSHGVFAGALLADELLLKEKERRMSSDGGGGWLLPVIFEVWVEMLLYAGNRCSRESHAKQLNSGGELITLVWLLAEHAGLYRINKPKQHFKCAEYASDMV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g07110 | LOC_Os04g07110.1 | Chr04 | 3766125 | 3768464 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGGGAGGAGGGGTGATGCACGTCCTGAACGAATGGGCGATCGAGATCCTGTTGCTGGTCAGCTTCTTCCTCCAGCTCGTCCTCCTCTTCTTCGCCGGGTTCCGCCGCGTGGGCGCCTCCGCCGTGCTGAAGCTGGTGGTCTGGCCGGCGTACCAGCTCGCCGACTTCGTCGCCACGTTCACCATCGGCCACCTCTCGGTCGGCCACGAGCGGCGGCGGCTGGTGGCGTTCTGGGCGCCGTTCCTGCTGCTCCACCTCGGCGGCCCGGACAACATCACTGCCTACTCCCTCGCCGACAACCAGCTCTGGAAGCGCCACCTCGTGTTCGGCCTCGTCCCCCAGGCGCTCGGCGCCGCCAACGTCATCTACCGCTCCTTCGCCGGCACCACCACCACGCTGCTCTCGGCCGCCATGCTCATGTTCGCCATTGGCGTCCTCAAGTACGGCGAGCGGACATGGGCGCTCAAGTACGCCAACCTCAGCAGCATCCGGAGCTCCGTCAATGTCGTCAAGACGCCGCCGGAGCGTCGGGTTCAGTACTACCCTCCGTCGTCGCTGCCTCGGCGTGACGGCGAGGAGGCCGACGAGGAGGAGCTTCTTCTTGTTGCTCACTTCCACTTCCATATCTGCAAGCGCGCCATGGCGGACTCGTCGGTGGAGGTGGACTCCGGCGACTACGACCCCAAGATTTTCTCCTACGGGTGGAAGGAGATGTGCCGGGTGGTGGAGATGGAGCTCTCCCTCATGTACGACATCCTCTACACCAAGGCGGCCGTGATGCACACCTGGTTCGGCTTCGCCATCCGCGTCGTCTCGCCGCTCGCCGTCGCCGCCGCGCTCGGCCTGTTCCGCCTCGAGGACGACCTCGGCAGCTACCGGCAGATCGACGTCGACATCACCTACGCGCTGCTGGTCGCCGCCTTCGTCCTGGAGACGACGTCGCTGTGCCGGGCGGTCGGGTCGACGTGGATCGCCGCCTTGCTGCAGACCACGCGGTGGGCGTGGCTCCGCCACGAGGCCCTCTGCACCGGCCGGTGGTCCCGCCTCCGCCGTGCCGTCGCGTCGCTCCGGCGGCTCGTCCACCGGGACGGGCACAGGTACTGGTCCGGCACCATGGGGCAGTTCAACGTGCTCCACTTCTGCACCCGCGACGGCGCGGCGGAGCGGCTCGGCGCGGCGGCGGAGAAGGCCGGGCTCGGGAGCTGGTGGAACAGGCACGTCAACGCCGGCAGCATCGTCATCTCCGACGAGGTCAAGGAGCTCGTGTTCGGACACATCCAGAACATGTTGAGAGCCGTGGACTCCATGTCGACCACCGAGCTCGACGCCATCAGGACAACGAGAGGCCAGCGCGCGCTCCGGCGCCACGGACTTGACGGCGACCTCGCCGCCAGCCTCGGCGAGGAGTTCCACCAAGGCATCCTCACCTGGCACGTCGCCACGGACATCTACCTCGCCGTCAGCGGCGGCGACCGATCTTCTCCAGCCAACGCCGGCGACAGGGCGGCGGCGGCGCGGCAGCTCACGGAGGCGGTCCGCGCGCTGTCCAACTACATGATGTTCCTCGTCGCCATACGCCCCGACATGCTCCCGGGCCTCGTGCTCCGGAGGCTGTACCAGGTGACATGCGAAGACATGGCCAGGATATGGCGGGAACGCAAGGACACCCACGAATCATCGTCTTCTTCCTCCAGCTGCCGCTTCATCGACGTCCTAAGCATGGTCACCAGGCTGTTCCAGCTGCACGTCGACGACCCGACCTCCGCCTCCAGGACGCCGGAGAGGAAGAAGCTGGCGGCGATGCTACGTGACAACGCCTACAATGGCGATCAGAATGTGAGGAGCCATGGCGTCTTCGCCGGCGCTCTGCTCGCCGACGAGCTGCTGCTGAAGGAGAAGGAGCGGCGGATGTCGTCGGACGGCGGCGGCGGGTGGTTGTTGCCGGTGATCTTCGAGGTGTGGGTGGAGATGCTGCTGTACGCCGGCAACCGGTGCAGCAGGGAGTCGCATGCGAAGCAGCTCAACAGTGGGGGTGAGCTCATCACGCTGGTGTGGCTGTTGGCTGAACACGCTGGGCTGTATCGTATAAACAAACCTAAGCAGCATTTCAAGTGTGCTGAATATGCTAGTGATATGGTATAG
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| Protein seq | MAGGGVMHVLNEWAIEILLLVSFFLQLVLLFFAGFRRVGASAVLKLVVWPAYQLADFVATFTIGHLSVGHERRRLVAFWAPFLLLHLGGPDNITAYSLADNQLWKRHLVFGLVPQALGAANVIYRSFAGTTTTLLSAAMLMFAIGVLKYGERTWALKYANLSSIRSSVNVVKTPPERRVQYYPPSSLPRRDGEEADEEELLLVAHFHFHICKRAMADSSVEVDSGDYDPKIFSYGWKEMCRVVEMELSLMYDILYTKAAVMHTWFGFAIRVVSPLAVAAALGLFRLEDDLGSYRQIDVDITYALLVAAFVLETTSLCRAVGSTWIAALLQTTRWAWLRHEALCTGRWSRLRRAVASLRRLVHRDGHRYWSGTMGQFNVLHFCTRDGAAERLGAAAEKAGLGSWWNRHVNAGSIVISDEVKELVFGHIQNMLRAVDSMSTTELDAIRTTRGQRALRRHGLDGDLAASLGEEFHQGILTWHVATDIYLAVSGGDRSSPANAGDRAAAARQLTEAVRALSNYMMFLVAIRPDMLPGLVLRRLYQVTCEDMARIWRERKDTHESSSSSSSCRFIDVLSMVTRLFQLHVDDPTSASRTPERKKLAAMLRDNAYNGDQNVRSHGVFAGALLADELLLKEKERRMSSDGGGGWLLPVIFEVWVEMLLYAGNRCSRESHAKQLNSGGELITLVWLLAEHAGLYRINKPKQHFKCAEYASDMV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.228725 | 0.041940 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0154800 | RBH | 0.350353 | 0.064593 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g07260 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0154800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001930 | SBH | 0.0 | 2.822065 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0002210 | SBH | 0.0 | 1.342207 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0002080 | SBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002100 | RBH | 0.0 | 0.062111 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0002090 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0055200 | RBH | 0.0909285 | 2.867098 | 0.0091225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002130 | RBH | 0.0 | 0.142639 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0056500 | RBH | 0.2112255 | 0.9224055 | 0.0239755 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002110 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002350 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0002030 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0002050 | RBH | 0.0 | 1.686918 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002210 | RBH | 0.0 | 0.329898 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002130 | RBH | 0.0 | 0.000000 | 0.0 |
