Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g06850 | OGI:04008940 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:3609046-3613651 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTAACCGATCTATTTAAACATTTTTAATTTATAGTCTTCATAATACAAATAACAAACAATAGGCCGTGTAACACACGGGTTAACGATAGGCTGTGTTACTAGGCATTAGGTTCCAAGCTCGCCAGTTTCATCTCTGGCATCACCGGGGATGCGAAATATGCCAGCGTGTTCGTTGAGTATCCAGACAATTGTTGTGAGCTCGCCTCCACAGGCGAGCTGCTTGGCATGAGAATCCCTTGTGCATCGGACGGACGCATACATCAGAATACGAACCCATGCCTTGAAGATATAGTCCAGCATTACCGAGATATCAAACGCAACCTGTTCTCACAATATGAGGAATCATCTTTTAATCCTTTCATATCTCTCAGGGCTAATTTCGATATGTGCGGTTATATGTGGGCTGTCTACCCAAGCTCTACTTAGCAGCACCTCGGCGAATTTAGCTCCATCAGACAGAATTATATTCTCGTCATAAAGAACACTTGCCTTTGCTGGCCTTGACTTGTGATTACTATAACCTGGCCTCCAGTTGCTTACCTTCTTTGGAGCGTTTGAGATTTGGACCTGCTTCTCCTTCTCCATTTCTATTAGCCTGTCGGCCAGCTTCTCCTTTCTCTCTATCAAGCTACCAGAATATCCTTCTTTGAGCAATATTTCCACAAGAGCCTTGTGAGTTTCTTTGTACAGGCTGCGTAGCTTAAGGCCTGGTAGCATGCTTGGGCGGACCGCTACGAGGAACGCCATGTAATTCGACAGCGCCATGATCACCTGTACTTGCTTGGAGTTGGACGGTGATGCAAATTGACGACTGACCAAGAGGAAGATGTCCGTGGCGATGTGCCAGATAAGGATTGTCTCTTGGAATGCATGAGCAAAGTTCATAGCTTCATCAAGCTCCCGGTTCTTCCATGCACTCCCGGCATATCCCAGACTGCTGCAAGAGAGTAAATTAGTCTTCTCAACAGTCGCAGCTGGATATGCTGTCTTGAGTTGCTCCCATATCTGTTGGAACAACAATTCCCTTACCTCCGATGAAATTGCAAGACCCCTTGCGTCATGGTATTGGTACTCCATCCAACTGTCATCTGATACAACCTTCTTCAGCAGCGAGCCAAACATGCCGATCGTGCCATGAGTGCACTCATGCAATAAGTTGTACTGCCCAACGGTTCCTGACCACATCCTGTACCTAGTTGGTTCCTTGCCGAGCAGCCGGCATGGATCCAGACAGAGGACAAGACGACGGAGCAGGCGCCACCTCCCGGAGCTCAAGCATGCGGCATGAAACCAGCAATCTGGCCTATTGTTCAGGAACGAATAGGTCCATGTAGACACCATCGCCCTGAGAAGCCATCTGACATCCAGGATGATGGTGCCGACCATCAAGATGTAGGTGATGAGCACATCTGCCCTCCTCTGCTCATCTTTACCTTGGAACCAGAACAGCAGGAACGCGGTGGCACTGACGACCGGCGACGCCAAACGGATGATGTAGCCGAACCATGTGTGCACCACAGCTACCTTGGTGTAGAGGATGTCGTACATGAGGGACAGCTCCATCTCCACCACCCTGCACATCTCCTCCCATCCATGACCAAATATTTGTGATCGTGCCGCATCACTTTTCAGGGGATTCTCGTCGTCTGAATGATCGATGAAGGCACCCTTGGTGATATGGAGCAGGCCATGAGCAACCAGCAAGGTTCTCTCGTTACCCACCTCTTTAACATCTCCGAAGCTTCGTTTTCCTAACTTGCACTTCTTGTTTGAGCTTCTCATCTTTCCCAGGTTGGCCTGCCTAATCGCCACGGCCCTCTCCACGTACTTGGCAATGCCGATGGCGAACATGACGACAGAGACCCACAGCAAGGCGCTACCGCCGCCGTCACGGTTGTATATCTGCTTGTACAGGACATATGATGCTCCCAAGATCTGTACTGTGACGGTGAGCACCTGTCTCCCGGCGAGAACCGTGTCCTCAAGGGAGTAGGCGGTGATGTTGTCGGGGCCAGCAAGATGCAGGAGCAGGAACGGTGCCCAGAATGCCAGCTGCTGTTGCTGCTGCTGCGTTGTGCGGCCGAGCGACATGCTGCCGAGAGCATACGTCCCAGCCCAGCCGCCAAGCTGGTACGCCAGCCATAGGACAAGTGCCCGCACGCCGGTGGCTTTACGCCGACGGATTCCGGCAAACAGCGTGAGGACGAGGTGGGCGGCGAAGCTGCAGAGCACCACGATGCGGATCGCCCAATCGTTGACAAACAGGGACGTCTGGTTCAGCCAGCCTGCAGCCATGACAATATTGTTAACTTCTTATGCACTGAAATGAGGTTTCATGGTGTACCACACATTCACCGTTTGACATATTAAGTGAGAGTTAACGGCTGAGGGCACACATACCGGCAGCCCAGCTGATCGATCAACAAATTTGTTACCTAGGAGAGCGATCAATCATCTCATAGGCTCAAAGCAAGATGACTAGAGTTTGATAAAAAAAAACTGTGAGCTTGTATGCTTGTAAACTTAACTGATTGACCAGTGTTTACTACTTTAGTTTATCTGGCAACTAGCTAAGCTTGCTTGCTATTATAAAATTGGTGGTAGGTGGTACTACAAACAGATTCATTCCTCTAAAGAAAAAGAACTGCAGACTGATTCAATAGCTTCACAATTAGCCGCTTGGTTCCACTCAGGATTCCATTTTCTAGATAGTTTCATTGAGAAACATTTGGTCACCATCAAGAGTAACTGTCAAAAGAATTGGCCGGTTTATAGAATGTCTGTAAGAACACCGGGAAACTGTGGTCAACCACAGAATGGTGATTAAGACTATTACGGAGTGCAAGAATATAATGCTTCCAAAGGAAATAAAATAGCCAACTAGTGCAAACCCACACAACTTGGGGTTAACCCAGTGTTTTCAAGTTGTCTGATTAGTCGCGACTAATCGTAACTAGTTGTCCTTATCGCTACCCTGATCTCAATCAGGAACCTCGAAGCGATTAGTTCGATAGAAAACTTATCGTCCGACTAGTCACAACTAGTCACGATTAGTCGTGGATGACTAGTCTGTTAGGGCTAAAAATATGTGTTGGGCTTTACACTTCAGTGGCAGGCCTTTAGCCCAGCCCAGCCCAGCCCAGGAAGGCCTGTACCCCTCATCTAACCCGAACCAGCAGTCTAGATCTAGTCACGGGAGAGAGGGGAGAAAAGATGAAGGACTTATTGCAACAAGGACAGGTAAATGATTTAACTTTAAGACCTTAAGTCAAGTGTGAACTGTCAACTATGTAAGTCTGATTATCCTTAGTTTGTACTATACTATACTAGTATACTATGGTAAGTAATACTTATAAATATCTATACATTATCCTGGGTACCCCTAGCCCATAGTCACTGACTAATCTACAACTAGTCACGACTAATCACGATTAGTCGACTAGTCGGTGCCCTTATGACTAGTCCCGACTAGGCGACTTGAAATCACTGGGTTAACCACAGTTTAACAAACTCCACCTTACAGGGTTGTATGAACGGTATTGCAAATCTCGGGGGATCTAGCATTAAAGTTCAAGGGTGCTAATAGGCTTCCATCCAAAGTTAGGTAGGTAAAATCTAGTCAGGAAGTTTGTAGTATTTTTGTAGGCTTGTTGTAGCAGTATGAATATTTGTTCAAGACAAGCCAATAAAAATAGGCCAAAATGCATACCGGCCTGAAGTGAAATAGTCAAGTGGGAGCAGCTACTTCATGCCTTCATGCTTTATTCGCCGTGTACTATAAACAAACCCTATGTGGATTTGGTTGAGGCTCCTCCCCACACCCAATATCCCTCTATCAATCCGCTTCCACCTGTTTGGTTAATCCCTGTGAGGGAAGGATTGGAGGGGATTTACTCAATCCCCTCCAATTCTCTTCAATCTCCTCTAAACCGAACAAGTCCTAAGTATTGTATTTGTTTGGAGGGGATTGGTCATATTCCAGAAAACATTGTCAGGCTTCATGGGCTGGCGATGACAATTTGTCTCTCCCGCGTTCTGATAATAAGGAAAATGTAGAAACATACAGGATTTTGTTGTCAACTGAACATCCCTGAATCATAATTGATAAATTGAGCATGAGGCATGCATGTACCTAGAACGAAGAATCTCATGTAGGTAAAGAGATCACATAAGTTGCACTTCTCTTCCTCCAATAGCTTCCTCACCTTGAGTGAATCGAGCTCAATCTCGCTCGGACACCAGCCGAGATGCAGGTCGAGGGCGCTGTCGCCAGATTCGTCCACCGCCGCTCGGCTAGTGGTCCCCATCATGTGCGTCGTCGGCCCAGGAATCCCAGCCGCCAGATCCGCCTCTCCTTCGTCTCACCCCCACCCTCCGCCTCCGCCTCCGCCTCCGCCGCGGCCCTCGGCCACCGCTCCCATCTCCCCGGAGCTCACTGCCTCGGCGCCTCCATCTGTCGCGTGTCGCCGTGGGATGTGGCGCCGGCGACCTCCGTCCTCGGGCAGATCCGGTGCCCAATAGGCCATGACGCTGCGCTGCATGGTGTGGGGGAGGGAGGGATGATGCTCAGCTGGCTGCCTGCGGAGGAGAAAGCTGGTGTCGCGGT
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| CDS seq | ATGTCGCTCGGCCGCACAACGCAGCAGCAGCAACAGCAGCTGGCATTCTGGGCACCGTTCCTGCTCCTGCATCTTGCTGGCCCCGACAACATCACCGCCTACTCCCTTGAGGACACGGTTCTCGCCGGGAGACAGGTGCTCACCGTCACAGTACAGATCTTGGGAGCATCATATGTCCTGTACAAGCAGATATACAACCGTGACGGCGGCGGTAGCGCCTTGCTGTGGGTCTCTGTCGTCATGTTCGCCATCGGCATTGCCAAGTACGTGGAGAGGGCCGTGGCGATTAGGCAGGCCAACCTGGGAAAGATGAGAAGCTCAAACAAGAAGTGCAAGTTAGGAAAACGAAGCTTCGGAGATGTTAAAGAGGTGGGTAACGAGAGAACCTTGCTGGTTGCTCATGGCCTGCTCCATATCACCAAGGGTGCCTTCATCGATCATTCAGACGACGAGAATCCCCTGAAAAGTGATGCGGCACGATCACAAATATTTGGTCATGGATGGGAGGAGATGTGCAGGGTGGTGGAGATGGAGCTGTCCCTCATGTACGACATCCTCTACACCAAGGTAGCTGTGGTGCACACATGGTTCGGCTACATCATCCGTTTGGCGTCGCCGGTCGTCAGTGCCACCGCGTTCCTGCTGTTCTGGTTCCAAGGTAAAGATGAGCAGAGGAGGGCAGATGTGCTCATCACCTACATCTTGATGGTCGGCACCATCATCCTGGATGTCAGATGGCTTCTCAGGGCGATGGTGTCTACATGGACCTATTCGTTCCTGAACAATAGGCCAGATTGCTGGTTTCATGCCGCATGCTTGAGCTCCGGGAGGTGGCGCCTGCTCCGTCGTCTTGTCCTCTGTCTGGATCCATGCCGGCTGCTCGGCAAGGAACCAACTAGGTACAGGATGTGGTCAGGAACCGTTGGGCAGTACAACTTATTGCATGAGTGCACTCATGGCACGATCGGCATGTTTGGCTCGCTGCTGAAGAAGGTTGTATCAGATGACAGTTGGATGGAGTACCAATACCATGACGCAAGGGGTCTTGCAATTTCATCGGAGGTAAGGGAATTGTTGTTCCAACAGATATGGGAGCAACTCAAGACAGCATATCCAGCTGCGACTGTTGAGAAGACTAATTTACTCTCTTGCAGCAGTCTGGGATATGCCGGGAGTGCATGGAAGAACCGGGAGCTTGATGAAGCTATGAACTTTGCTCATGCATTCCAAGAGACAATCCTTATCTGGCACATCGCCACGGACATCTTCCTCTTGGTCAGTCGTCAATTTGCATCACCGTCCAACTCCAAGCAAGTACAGGTGATCATGGCGCTGTCGAATTACATGGCGTTCCTCGTAGCGGTCCGCCCAAGCATGCTACCAGGCCTTAAGCTACGCAGCCTGTACAAAGAAACTCACAAGGCTCTTGTGGAAATATTGCTCAAAGAAGGATATTCTGGTAGCTTGATAGAGAGAAAGGAGAAGCTGGCCGACAGGCTAATAGAAATGGAGAAGGAGAAGCAGGTCCAAATCTCAAACGCTCCAAAGAAGGTAAGCAACTGGAGGCCAGGTTATAGTAATCACAAGTCAAGGCCAGCAAAGGCAAGTGTTCTTTATGACGAGAATATAATTCTGTCTGATGGAGCTAAATTCGCCGAGGTGCTGCTAAGTAGAGCTTGGGTAGACAGCCCACATATAACCGCACATATCGAAATTAGCCCTGAGAGATATGAAAGGATTAAAAGATGA
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| Protein seq | MSLGRTTQQQQQQLAFWAPFLLLHLAGPDNITAYSLEDTVLAGRQVLTVTVQILGASYVLYKQIYNRDGGGSALLWVSVVMFAIGIAKYVERAVAIRQANLGKMRSSNKKCKLGKRSFGDVKEVGNERTLLVAHGLLHITKGAFIDHSDDENPLKSDAARSQIFGHGWEEMCRVVEMELSLMYDILYTKVAVVHTWFGYIIRLASPVVSATAFLLFWFQGKDEQRRADVLITYILMVGTIILDVRWLLRAMVSTWTYSFLNNRPDCWFHAACLSSGRWRLLRRLVLCLDPCRLLGKEPTRYRMWSGTVGQYNLLHECTHGTIGMFGSLLKKVVSDDSWMEYQYHDARGLAISSEVRELLFQQIWEQLKTAYPAATVEKTNLLSCSSLGYAGSAWKNRELDEAMNFAHAFQETILIWHIATDIFLLVSRQFASPSNSKQVQVIMALSNYMAFLVAVRPSMLPGLKLRSLYKETHKALVEILLKEGYSGSLIERKEKLADRLIEMEKEKQVQISNAPKKVSNWRPGYSNHKSRPAKASVLYDENIILSDGAKFAEVLLSRAWVDSPHITAHIEISPERYERIKR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g06850 | LOC_Os04g06850.1 | Chr04 | 3609046 | 3613651 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCGCTCGGCCGCACAACGCAGCAGCAGCAACAGCAGCTGGCATTCTGGGCACCGTTCCTGCTCCTGCATCTTGCTGGCCCCGACAACATCACCGCCTACTCCCTTGAGGACACGGTTCTCGCCGGGAGACAGGTGCTCACCGTCACAGTACAGATCTTGGGAGCATCATATGTCCTGTACAAGCAGATATACAACCGTGACGGCGGCGGTAGCGCCTTGCTGTGGGTCTCTGTCGTCATGTTCGCCATCGGCATTGCCAAGTACGTGGAGAGGGCCGTGGCGATTAGGCAGGCCAACCTGGGAAAGATGAGAAGCTCAAACAAGAAGTGCAAGTTAGGAAAACGAAGCTTCGGAGATGTTAAAGAGGTGGGTAACGAGAGAACCTTGCTGGTTGCTCATGGCCTGCTCCATATCACCAAGGGTGCCTTCATCGATCATTCAGACGACGAGAATCCCCTGAAAAGTGATGCGGCACGATCACAAATATTTGGTCATGGATGGGAGGAGATGTGCAGGGTGGTGGAGATGGAGCTGTCCCTCATGTACGACATCCTCTACACCAAGGTAGCTGTGGTGCACACATGGTTCGGCTACATCATCCGTTTGGCGTCGCCGGTCGTCAGTGCCACCGCGTTCCTGCTGTTCTGGTTCCAAGGTAAAGATGAGCAGAGGAGGGCAGATGTGCTCATCACCTACATCTTGATGGTCGGCACCATCATCCTGGATGTCAGATGGCTTCTCAGGGCGATGGTGTCTACATGGACCTATTCGTTCCTGAACAATAGGCCAGATTGCTGGTTTCATGCCGCATGCTTGAGCTCCGGGAGGTGGCGCCTGCTCCGTCGTCTTGTCCTCTGTCTGGATCCATGCCGGCTGCTCGGCAAGGAACCAACTAGGTACAGGATGTGGTCAGGAACCGTTGGGCAGTACAACTTATTGCATGAGTGCACTCATGGCACGATCGGCATGTTTGGCTCGCTGCTGAAGAAGGTTGTATCAGATGACAGTTGGATGGAGTACCAATACCATGACGCAAGGGGTCTTGCAATTTCATCGGAGGTAAGGGAATTGTTGTTCCAACAGATATGGGAGCAACTCAAGACAGCATATCCAGCTGCGACTGTTGAGAAGACTAATTTACTCTCTTGCAGCAGTCTGGGATATGCCGGGAGTGCATGGAAGAACCGGGAGCTTGATGAAGCTATGAACTTTGCTCATGCATTCCAAGAGACAATCCTTATCTGGCACATCGCCACGGACATCTTCCTCTTGGTCAGTCGTCAATTTGCATCACCGTCCAACTCCAAGCAAGTACAGGTGATCATGGCGCTGTCGAATTACATGGCGTTCCTCGTAGCGGTCCGCCCAAGCATGCTACCAGGCCTTAAGCTACGCAGCCTGTACAAAGAAACTCACAAGGCTCTTGTGGAAATATTGCTCAAAGAAGGATATTCTGGTAGCTTGATAGAGAGAAAGGAGAAGCTGGCCGACAGGCTAATAGAAATGGAGAAGGAGAAGCAGGTCCAAATCTCAAACGCTCCAAAGAAGGTAAGCAACTGGAGGCCAGGTTATAGTAATCACAAGTCAAGGCCAGCAAAGGCAAGTGTTCTTTATGACGAGAATATAATTCTGTCTGATGGAGCTAAATTCGCCGAGGTGCTGCTAAGTAGAGCTTGGGTAGACAGCCCACATATAACCGCACATATCGAAATTAGCCCTGAGAGATATGAAAGGATTAAAAGATGA
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| Protein seq | MSLGRTTQQQQQQLAFWAPFLLLHLAGPDNITAYSLEDTVLAGRQVLTVTVQILGASYVLYKQIYNRDGGGSALLWVSVVMFAIGIAKYVERAVAIRQANLGKMRSSNKKCKLGKRSFGDVKEVGNERTLLVAHGLLHITKGAFIDHSDDENPLKSDAARSQIFGHGWEEMCRVVEMELSLMYDILYTKVAVVHTWFGYIIRLASPVVSATAFLLFWFQGKDEQRRADVLITYILMVGTIILDVRWLLRAMVSTWTYSFLNNRPDCWFHAACLSSGRWRLLRRLVLCLDPCRLLGKEPTRYRMWSGTVGQYNLLHECTHGTIGMFGSLLKKVVSDDSWMEYQYHDARGLAISSEVRELLFQQIWEQLKTAYPAATVEKTNLLSCSSLGYAGSAWKNRELDEAMNFAHAFQETILIWHIATDIFLLVSRQFASPSNSKQVQVIMALSNYMAFLVAVRPSMLPGLKLRSLYKETHKALVEILLKEGYSGSLIERKEKLADRLIEMEKEKQVQISNAPKKVSNWRPGYSNHKSRPAKASVLYDENIILSDGAKFAEVLLSRAWVDSPHITAHIEISPERYERIKR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.215138 | 0.407101 | 0.225722 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0152500 | RBH | 0.326895 | 0.621952 | 0.901015 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g05360 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0152500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001860 | RBH | 0.087143 | 4.164814 | 4.505009 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0002130 | RBH | 0.000000 | 1.265678 | 0.591929 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001530 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0002010 | SBH | 0.034077 | 0.078951 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0002030 | RBH | 1.519995 | 2.925093 | 2.563737 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0052900 | RBH | 2.739118 | 6.0538505 | 6.34786 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002040 | SBH | 0.079308 | 0.056379 | 0.397480 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0054400 | RBH | 2.6195795 | 6.0445325 | 9.3293065 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0002010 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002270 | RBH | 0.090387 | 2.989137 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001720 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0001670 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0002000 | RBH | 0.260952 | 1.697704 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001740 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001720 | SBH | 0.0 | 0.0 | 0.0 |
