Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g06770 | OGI:04010120 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:3555220-3562917 | ||||||||
| Gene Symbol | AGO4B, OsAGO4b, AGO4-1 | ||||||||||
| DNA seq | GTTGTGGGAAGAAAATCGTCATAATTTCATCCATGCCAGTTATATTTTACCCGTCAGTAAACTGATGATGAGTAATCCTGAGGATATCAATGATGTCATGATAACCACAAGGAAAGATTTCCTTGGTCATTCATCCCCAACCTCGAACAGATCAGATACTATTTCTAAAATCAACTCAGACAAAGGGAAACGGCACATGCTACATAGAAGGGAAGGGACCATAACCAGCAATAGGCATAGCTGCACAATGTCGAAGTCTGGAAACTTACTAACACCACACCACATACTAAACAGCAGTCCATTAAACCTAACTTAAAAGCTAAAAGGGTTTGGTTAAAGGATACTCCTACCAGCAGATAATCCATGACACAGGCAGCATGCCAAGGGCAGGTACATAGGTTCCATACATGTTCCTAATTATGAGAAGCAAAAGTACTAGTAGTTCCCCCAGGCCGATCACCGGATTTCTCAACGTCGGCGAGCATTTGATCGAGAGGCGGCACGATCAGCAGAAAAACATGGAGCTCCTCACTTTCTCATGGAGGCGAGGCAGCTCAGGCACCGGTACACTTCCGACAGACGTATGACCTCCTTGGCTGGACGACGCGTCCGACATATCTTCGAACTTGAGGAATGTGCCCACCTGAGCAGCAGCAAGATGGGCATAGCAAATCGGAGCAACTGCACACAAATGCGCAAGGTCAGGCACCAACAGGACAGTACAGTGATCTTACCCGAAGAGAACTAGAAATGGCATTACAATTTACAAGCTACATACCAACTGATATGGCTGTTGTGCTTCTCTGATACCTGAAATGGACACAGGCAGCAAATCAGAACAGAACTAGCTAACAGATCGCAGGGATGAAATGCCAGTGCAGTTTTCAACATACACATAAGAGAGTGAGTGCACTAGCTCCTGCAGATCATCAGGGGAGAAACCTATCTCATCGTGCAGAACATGATAATGTGTTGGCCTCGTCGTTCCCTGAAACAACAAACATCTTATAAACACAAGCAACGGAGAGCATACAAAGCAATGAGCTCACAATAAGTGCACTGCAGGTGGAAACCAGAGATAGCTTACAATCATTCCAGCATGAGCACACATGTAGAAGTCATAATTCCTTGGATGGCACACTTGTTTGTCCACAACAGTACCTACAGAAGGCCGTTTACCATTTATCTTTAGCCTCGCCATGATTTCATCACAGTAAAATGATATAACATAGGTATCAGAGAAAACTGCCTAAAGAGTTACCTGGCGGAACATTATCTGGAGATCCAGACTGAAAAAATTTGGTATGATGATTCTTCTGAGCAACAATCACTGTGAACTTTGGTGACCACTTCTCATCGAGAAATTTGCATGCCTGCATTGATTAAAAGCCAAAGAAACAGTGATGCACAATATGTGATATTTTTCAGATGAGTCCTAGGCATAATTACTACTTGATGAGCTGCATCAATTAAAAGCAAAACAATGAAAGCGATGGGCAATAGGTTACATTTAAAGAAAAATGAGCAATAGGGCATAGCTACTACTTGGTGAGTACAGAAGTTGGACGTGCAGTAGCAGGTATGGGAGGGCTAATGAAATAAACACACACCTCAATGATCTGATCAAGCTCAATGTTAATGACCTGAGTAAACTGGCTTTCACTAACTCCATCCCTAAAAAATAGAAAGTATTTACATCAGTTGCTGGGACAGCTTCAGTTAACAATTTGAGTAAATGAACATCTAAGATATTACTACAGAATTCAGAGAGATTCACAGACAACAATTTTTGAACTCGAAACCTGAAAACGATAACATGATCCGGTTTCCGTTTTCCAGAACTAGTGTAGAAGTCAATCAGCGATTCCCTGAAAAATCCCAAATGCAAAGATAAGCATCTATAGAAAGGATACTTGTGAGCAATCATAGTATACATTGGCAACAATGGTTTATCAAATAATATCTCTTACCGAATGAGGCCATCATCTTCAGTTCCTCGTGGCTTAAACAAGGAAGACATCATTTCTAGCTTAGGTGACTGAGTGTGCACCGATGCTCTGTATTTAGAGATGAGAGGCCATTGGCGAGAGCTAACCACCTAAACAACTCCAAAGGTATACAATAACCAATTAAGCACCCCAACTTAGAAATTGAGAAATCCATGCATATGACATGAGCTACAACAGTTCAGTGTGTGGAGTTATGAGAGTAAAAGTATATCCCTCTTACCGCAGCAATGGAAGGTCTATCAGATTGTCCTGGTTGACCGTGTGACACATCCATACCTAAGATGATGGTAGGTGTCTTCGATACAAGAGGTATTGAAGGGGATGCTTCAATTTGCAGCAATGAGTTTATTCCACCAAGCTGGTTAGTAACAGGGGAAGAGCAAGTCCATAAGCTTACATAAATGGATAATGCAGTAAGAAAAGACAAGGTTACGTTAAATACCTTGGCATTTATCTTCAATAGCAAATTGAGTAGGTACTGATCATTGACTCTTTGTGGAGCAAGGCATTGTGTGACAATACCGAATTCAGCAAGACACTTCCTCTTCCAAGGACCTGGTTGAAACAAAACAATGTAAATTTTGCAAGGGAGTGAATGACTTTAGGGAGTGGAAACAATGACGAACCATAAACTTCACAATTTTTCCTCTCAGGAAGAAGGCACAAGAGGAATTTCGGAGCTCCAGGAAGTTTCGATTTTATCTGTTCAAACATATCATCTACTCTTCTTGATACAGGTGCTCGCCTCAATGAGGGGCTCTCTTCAAACACATCAAAAGGTTCGGCCATTTGCTGCAAAGTTAACAAAGTTCAGTGCAAAGAAATATCAGGCGTAAAATATGTGATAAAAAGCTAAAACATACAATCCCCTTCGCAGATGCATTTCTTATGAGGTCCCGGATAAGATTTCGCACATCACAGCGTGCAGAGAAATTAACTACTGCCCACTTATCGACAGAACAGGTCTGAATCAGTTTCTGAAAAAAGGGAAAGAAATCAGAATGTTCCTCGACCTCCTCCATACCAAGAATAAAGATATGATAAAGAAAATCATTCTGACCTTATTGTTGAAGTTCCACCGACCATTGCGTGGGAATATATCTTCACCATTGCCAGCTTTCAGCTACATGATACAATATATACTTAGACGCGGTACGTTGAATAGAACATGGAGCATGTGAAAACATACGAATTCAGAGAATCCTCACCAACCTTTGGGGGTTGCAGGACCCTTCCTTCAACTTGAGTAAAATTTTGGGCAATTGAAATGCCAGATGCCCTCAACATGGGATCAGAATCATAATTACTATGTCGAAGTGCCTTGCATTTAGGGTAAACATGAATCGTCACTTACCAGTCATGTTGACAATTCCAACCATTTCTATATGATTGTAGCAGGTTAGAATCAAGAATAGTAACTCACATCATTAAGGACTGACATTCTTTCCTGGGGCTTCTGTCTGGATTTCTCAACAAGGGAGGACCTTTGCAGTGTTGACAAAGCTTTGGTGTATCTTTGTAGTGGAATAAGAGAGCATAGCTGGTAATACAAGAATATTCACAACAGGAGTTTGAAATAATAAATAATTCTAGTAAACTTTTTTAAACATGTAGAATAGCAAAAATTAAACAGACCTCTATTGGAAAATAAGTTGGACGCTTTGGTTTCCCCACATTTATGCAAGGAAGATTGCCAGAATAGCGCAGCTCTATGCCTTTGTTTTTCACAAAGTAATCATAGACTGTAACTTCAACTTCATCAACATCCCCATTGTTCCCATTCCTCTGCCTCAACGAAAACCTAGTCAAGCATGCCAATCAGAAAGCAATCGATAATAGCAGAATGATTAGGAAAAAAACTGCAATACAAGCTCAAAACAATTGGGTGCCTTTTCCAAAATATTAATTTAAGAATTGCTTTAGATGAATAAAATAGCAAGGAAGAATATGCTCTCACATCTGTTCGTTGCAATTTCTGTCACTCAAACCAATGATCTTGAATTCTGAATTCACAGGGGTGGTTCTTATCCTCAAGTTCTTGAGAGCACGCTTGGCCTGTATTGAGCAAGAAAACATCCAAGTAAGAATGTACCAATATGGTTGGATGATTACTAACACATAAACATCAATGATATTAAATAAAAAGCTCACCTTTTGCCAATCAATTCTGTCAGGGTGATCAACTTTCTGGTTGGCAAGAAGAAAATCGATAACAGGACCAGGTTTAACAATCATAGTTGTCGAAACATCTGAAAATTCAGGAAGATTACTTAAATATAGGATTATGTAAGGACCACAAATAAACAATGCAATTGCACAACGATATGTCAGGACAAAATACAAACCGATAAACAATGCAATTGCACAACGATATGTCAGGACAAAATACAAACCGATATTCAGAGAAAGTCCACTCTGTGTGCCACGGAAACTTGAATGGAATCCTCGACAGCCCATCACACCACCACCCAGGTCAACAAAGTTATTAGGATTGTTGTGGAAAAATGACTGGCGTACTAAAAGGCAGCCCCTGTAGATAGTGAAAAAAAATTAATGCAGTCATGAGGTGATACACTTGTGGTTGACACGGTGGTATAGAGCATACAAAAACCCAAATACAGCAGAGCACTTTTAAATCACAGGGATAATGCACTTGTGGAGAAACATACTGTTTAGCAGAGTGCTGCCTTAATATTATATCAAGAACTCTGAGAGCTTCTTGGGAGTTCTCTGATTCTTGACCTTTTATGGCCTGAGCAATTGCATTCATAGGGATCTTTGCTGCAAAGCACAGCTCCACTTTGAAAGTCTTGGTCTGGTATGGTCTCCTAACTCTCTTCCTGTCACTACCTCCAGGGCTGTCATTACCTCCAGGGCTTCCATTGGCAGCAGTCCTATAAACAAGAAATAGTTAAACAAGACATAATACCAAACATAATATTAGGAAAGCACAAACAGCAAAAAAACAAATCAAGGATAAACTAACTTTCCAGTTGAAACATCCTCCAACACCACTGTGAACTCATTAGTTACTTGTGGAAGAGCACCAATTGTAAACAGGCTCTTTTCACCATCATAGGCAAAGTCCTTGCTTGAAAGCTCAGAACGGTAGGTTTGCTGCAGTTTATCAATCACCTTTCGACCTACCCCTTTCCCATCAACCGGTCGATCATCCTCATACTTCAGAATAACCTATTAATAAAGTACCACAGAACTAGAAATCAGCCAGGTACATATGTTGATTATGGTTATGAATTCCCATAAATTGAATATAAGATAATAAATTAGAATAGAAACCTACATTGTAGTGGAAGAAATATTCTTCACTACTCTTCACAGAAACTTTGTAATGATTCGCCAAGAGCTGGATTGGCTGTCCTTTTCTCCCTAAACCAGGCCTGGCCATTGGAAACCGCTTAGGTTTTGCTGGTTTGTTTGCTGGCACCTCGCTCTCAACGTCATCAGCTTTAATAGGCACCACATTTGCAGGTACGGGAGGAGGCGGCGGCAACTCATCGGCCTCACCATCATGAGCGTCCATTCTATGAGCTGCAAATAGGGGGATTAATCAATGTTACAATAGGGGAGATTACCCCTTTGAGGAATTGACATCAATGTGATAAACACATTATATTCAACATGTTGAATTCAATAATGCAATGACAGTTGCATCAATACGGAAAGTTTTGTTGCTGAATAAATAAAAAAGGGAGGTAACAAAACAATTGTAATCATTAACAAACCAGCCAGATATAATTGCTTGCAGCAGCAGATTAAAAGCTTTTAAGCGCAAAACCTGTATTACGGCAATTCCTTTTTAAGAAAGTTTGGCTCATTCTCCAACCGAATCCACCCTATTGTTATTAGTTGCATGTATTGTAGTGATTACTGCCTTGAGAAGTTAATCTTTTGTTGTTTTAATGCATGTATCAGCTGAAAAGGGGTAGCCTTCGGTCTAAATCACACTTACTGAAAAGAAATTTTAAATCGTACCAGAATAAAAGCTTGTATACAGCACTTGAGTTAAAAAGAAAGGACTTTTGAACCAAACAAACTAAGCAAGCGCATTAACCATTTAACCCTCTAGGGATAAATTTGAATCACAGCAATCGGAATAAAAGCAGGCCTCCACAAGAATTCTTTTCATTGTTGTTTTCATGCCTATCAGCTGAGAAGGGGGAGCCTATGGTCTAAATCACACTTCTTTTCAAAAAGAAATTTCAAATCAGACCAACTTGAAGCGCTTGTATACAACATTTGAGTTAAAAGACAAACTTTTGAACCAAGAGCCTTAAGCACGGCAAATTGGCCCTCCAGGACATAGCAAACTGAAGAGCTTGTATACAACATTTGAGTTAAAAAGACAAACTATCGATTTTTTTTTATCCAAGAAATGCAGTACAGCACATTGACTTCTCAGAGAGTAGCAAGCTGAAGGGCTTTTATACAATAGTTGAATTAAAAAGTCGAACTTTTGAACCAAGAAACCTATAAGAACAGCACATTGACCCTTCAGGGAGTACTAATAGCAACCTGAAGGGCATGTATACAATATAGTTGAATTAAAAGGATGGAACTATTTTGAACCAAGAAACTGAAGAACTTGTGTTGTCCTTAGGTTTCTTGTTTCAAAAGTTCATCTTTTTAATTCAACTATTGTATGAAAACCCTTCGGCTTTCTACTCCTTGAAAAGTCAATGTGCCGTACGGCATTTCTTGGTTCAAACCCCCCAGGGAGTAGCAACCTGAAGGTCTTGTATTGTATACAATAGGTGAATTAAAAAGACGAACTTATAAACCAAGAAACCTAAGCTCAGCACATTAACTCTCCATCGAGTAGCAAACTGAAGAACTTGTACACAACAGTGGAGTTAAAAACATGACCTTTTGAACCAAGAAACTTAAGCACAGCATATTGACCCTCCAGGGAGAAATTTTAAATCAAACCAAACAGACTAAAAGGCATGCCCCCCATGACCTTTTGAACCAAGAAACTTAAGCACAGCACATTGACCCTTCAGGGAGAAATTTTAAATCAAACCAAACAGATTAAAAGGCATGCCCCCCACAAGAAGCATCGACAACCAACTACATTTGGGGATAAAAAAAAACAAAAGAAACAAAACCCCATATTTGAGCAAGAAGGCGAATGCACCATTGTTACGGGAAGAGATGGGATATTGCAAGAAGCGGATACAAGAGCGTATTCACAAACTGGTTGCAAGAAACCAATACATATATAGATCTATATCATGCAAGTACATACTACTCACCAGATACCAATAAACCTAGGGTTTAGTTGAACCCCCAAAAAAAATTTTTAAGGGGGAAACGTTACAGGAGCGGATCCAACTTGAGACATAGGGGTTCAGTTAAACCCTCAAACTTTTTGGGGAACAAACAGATTGTTACTTGTATTAAGGTTATGGCGCTGAAAAGAAGAGAAGAGCTTCTTCCAAGATTTAGAAGAGAAGCTAGGATTGACGAACGCAAGCAAATTCCAGAAAAAAGTAGTCCCGGTGGGAGAGAGAGAGATGAATCAGAAAGAGGATGCGGATGCTCACCAGGATCCCCTGCTCTGCTCGCGACCCCTGTTCAGCCGCGAGATGGCGCAAGGAACGGAGACGACGAGACGGGAGATTTTCTTTTACGCGAGGAGGAATGGGGAGATACTCGAGTACTACTGACT
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| CDS seq | ATGGACGCTCATGATGGTGAGGCCGATGAGTTGCCGCCGCCTCCTCCCGTACCTGCAAATGTGGTGCCTATTAAAGCTGATGACGTTGAGAGCGAGGTGCCAGCAAACAAACCAGCAAAACCTAAGCGGTTTCCAATGGCCAGGCCTGGTTTAGGGAGAAAAGGACAGCCAATCCAGCTCTTGGCGAATCATTACAAAGTTTCTGTGAAGAGTAGTGAAGAATATTTCTTCCACTACAATGTTATTCTGAAGTATGAGGATGATCGACCGGTTGATGGGAAAGGGGTAGGTCGAAAGGTGATTGATAAACTGCAGCAAACCTACCGTTCTGAGCTTTCAAGCAAGGACTTTGCCTATGATGGTGAAAAGAGCCTGTTTACAATTGGTGCTCTTCCACAAGTAACTAATGAGTTCACAGTGGTGTTGGAGGATGTTTCAACTGGAAAGACTGCTGCCAATGGAAGCCCTGGAGGTAATGACAGCCCTGGAGGTAGTGACAGGAAGAGAGTTAGGAGACCATACCAGACCAAGACTTTCAAAGTGGAGCTGTGCTTTGCAGCAAAGATCCCTATGAATGCAATTGCTCAGGCCATAAAAGGTCAAGAATCAGAGAACTCCCAAGAAGCTCTCAGAGTTCTTGATATAATATTAAGGCAGCACTCTGCTAAACAGGGCTGCCTTTTAGTACGCCAGTCATTTTTCCACAACAATCCTAATAACTTTGTTGACCTGGGTGGTGGTGTGATGGGCTGTCGAGGATTCCATTCAAGTTTCCGTGGCACACAGAGTGGACTTTCTCTGAATATCGATGTTTCGACAACTATGATTGTTAAACCTGGTCCTGTTATCGATTTTCTTCTTGCCAACCAGAAAGTTGATCACCCTGACAGAATTGATTGGCAAAAGGCCAAGCGTGCTCTCAAGAACTTGAGGATAAGAACCACCCCTGTGAATTCAGAATTCAAGATCATTGGTTTGAGTGACAGAAATTGCAACGAACAGATGTTTTCGTTGAGGCAGAGGAATGGGAACAATGGGGATGTTGATGAAGTTGAAGTTACAGTCTATGATTACTTTGTGAAAAACAAAGGCATAGAGCTGCGCTATTCTGGCAATCTTCCTTGCATAAATGTGGGGAAACCAAAGCGTCCAACTTATTTTCCAATAGAGCTATGCTCTCTTATTCCACTACAAAGATACACCAAAGCTTTGTCAACACTGCAAAGGTCCTCCCTTGTTGAGAAATCCAGACAGAAGCCCCAGGAAAGAATGTCAGTCCTTAATGATGCACTTCGACATAGTAATTATGATTCTGATCCCATGTTGAGGGCATCTGGCATTTCAATTGCCCAAAATTTTACTCAAGTTGAAGGAAGGGTCCTGCAACCCCCAAAGCTGAAAGCTGGCAATGGTGAAGATATATTCCCACGCAATGGTCGGTGGAACTTCAACAATAAGAAACTGATTCAGACCTGTTCTGTCGATAAGTGGGCAGTAGTTAATTTCTCTGCACGCTGTGATGTGCGAAATCTTATCCGGGACCTCATAAGAAATGCATCTGCGAAGGGGATTCAAATGGCCGAACCTTTTGATGTGTTTGAAGAGAGCCCCTCATTGAGGCGAGCACCTGTATCAAGAAGAGTAGATGATATGTTTGAACAGATAAAATCGAAACTTCCTGGAGCTCCGAAATTCCTCTTGTGCCTTCTTCCTGAGAGGAAAAATTGTGAAGTTTATGGTCCTTGGAAGAGGAAGTGTCTTGCTGAATTCGGTATTGTCACACAATGCCTTGCTCCACAAAGAGTCAATGATCAGTACCTACTCAATTTGCTATTGAAGATAAATGCCAAGCTTGGTGGAATAAACTCATTGCTGCAAATTGAAGCATCCCCTTCAATACCTCTTGTATCGAAGACACCTACCATCATCTTAGGTATGGATGTGTCACACGGTCAACCAGGACAATCTGATAGACCTTCCATTGCTGCGGTGGTTAGCTCTCGCCAATGGCCTCTCATCTCTAAATACAGAGCATCGGTGCACACTCAGTCACCTAAGCTAGAAATGATGTCTTCCTTGTTTAAGCCACGAGGAACTGAAGATGATGGCCTCATTCGGGAATCGCTGATTGACTTCTACACTAGTTCTGGAAAACGGAAACCGGATCATGTTATCGTTTTCAGGGATGGAGTTAGTGAAAGCCAGTTTACTCAGGTCATTAACATTGAGCTTGATCAGATCATTGAGGCATGCAAATTTCTCGATGAGAAGTGGTCACCAAAGTTCACAGTGATTGTTGCTCAGAAGAATCATCATACCAAATTTTTTCAGTCTGGATCTCCAGATAATGTTCCGCCAGGTACTGTTGTGGACAAACAAGTGTGCCATCCAAGGAATTATGACTTCTACATGTGTGCTCATGCTGGAATGATTGGAACGACGAGGCCAACACATTATCATGTTCTGCACGATGAGATAGGTTTCTCCCCTGATGATCTGCAGGAGCTAGTGCACTCACTCTCTTATGTGTATCAGAGAAGCACAACAGCCATATCAGTTGTTGCTCCGATTTGCTATGCCCATCTTGCTGCTGCTCAGGTGGGCACATTCCTCAAGTTCGAAGATATGTCGGACGCGTCGTCCAGCCAAGGAGGTCATACGTCTGTCGGAAGTGTACCGGTGCCTGAGCTGCCTCGCCTCCATGAGAAAGTGAGGAGCTCCATGTTTTTCTGCTGA
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| Protein seq | MDAHDGEADELPPPPPVPANVVPIKADDVESEVPANKPAKPKRFPMARPGLGRKGQPIQLLANHYKVSVKSSEEYFFHYNVILKYEDDRPVDGKGVGRKVIDKLQQTYRSELSSKDFAYDGEKSLFTIGALPQVTNEFTVVLEDVSTGKTAANGSPGGNDSPGGSDRKRVRRPYQTKTFKVELCFAAKIPMNAIAQAIKGQESENSQEALRVLDIILRQHSAKQGCLLVRQSFFHNNPNNFVDLGGGVMGCRGFHSSFRGTQSGLSLNIDVSTTMIVKPGPVIDFLLANQKVDHPDRIDWQKAKRALKNLRIRTTPVNSEFKIIGLSDRNCNEQMFSLRQRNGNNGDVDEVEVTVYDYFVKNKGIELRYSGNLPCINVGKPKRPTYFPIELCSLIPLQRYTKALSTLQRSSLVEKSRQKPQERMSVLNDALRHSNYDSDPMLRASGISIAQNFTQVEGRVLQPPKLKAGNGEDIFPRNGRWNFNNKKLIQTCSVDKWAVVNFSARCDVRNLIRDLIRNASAKGIQMAEPFDVFEESPSLRRAPVSRRVDDMFEQIKSKLPGAPKFLLCLLPERKNCEVYGPWKRKCLAEFGIVTQCLAPQRVNDQYLLNLLLKINAKLGGINSLLQIEASPSIPLVSKTPTIILGMDVSHGQPGQSDRPSIAAVVSSRQWPLISKYRASVHTQSPKLEMMSSLFKPRGTEDDGLIRESLIDFYTSSGKRKPDHVIVFRDGVSESQFTQVINIELDQIIEACKFLDEKWSPKFTVIVAQKNHHTKFFQSGSPDNVPPGTVVDKQVCHPRNYDFYMCAHAGMIGTTRPTHYHVLHDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGTFLKFEDMSDASSSQGGHTSVGSVPVPELPRLHEKVRSSMFFC |
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| Function | Protein argonaute 4B [UniProtKB/Swiss-Prot:Q0JF58] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g06770 | LOC_Os04g06770.1 | Chr04 | 3555220 | 3562917 | - | MSU_osa1r7 | ||
| CDS seq | ATGGACGCTCATGATGGTGAGGCCGATGAGTTGCCGCCGCCTCCTCCCGTACCTGCAAATGTGGTGCCTATTAAAGCTGATGACGTTGAGAGCGAGGTGCCAGCAAACAAACCAGCAAAACCTAAGCGGTTTCCAATGGCCAGGCCTGGTTTAGGGAGAAAAGGACAGCCAATCCAGCTCTTGGCGAATCATTACAAAGTTTCTGTGAAGAGTAGTGAAGAATATTTCTTCCACTACAATGTTATTCTGAAGTATGAGGATGATCGACCGGTTGATGGGAAAGGGGTAGGTCGAAAGGTGATTGATAAACTGCAGCAAACCTACCGTTCTGAGCTTTCAAGCAAGGACTTTGCCTATGATGGTGAAAAGAGCCTGTTTACAATTGGTGCTCTTCCACAAGTAACTAATGAGTTCACAGTGGTGTTGGAGGATGTTTCAACTGGAAAGACTGCTGCCAATGGAAGCCCTGGAGGTAATGACAGCCCTGGAGGTAGTGACAGGAAGAGAGTTAGGAGACCATACCAGACCAAGACTTTCAAAGTGGAGCTGTGCTTTGCAGCAAAGATCCCTATGAATGCAATTGCTCAGGCCATAAAAGGTCAAGAATCAGAGAACTCCCAAGAAGCTCTCAGAGTTCTTGATATAATATTAAGGCAGCACTCTGCTAAACAGGGCTGCCTTTTAGTACGCCAGTCATTTTTCCACAACAATCCTAATAACTTTGTTGACCTGGGTGGTGGTGTGATGGGCTGTCGAGGATTCCATTCAAGTTTCCGTGGCACACAGAGTGGACTTTCTCTGAATATCGATGTTTCGACAACTATGATTGTTAAACCTGGTCCTGTTATCGATTTTCTTCTTGCCAACCAGAAAGTTGATCACCCTGACAGAATTGATTGGCAAAAGGCCAAGCGTGCTCTCAAGAACTTGAGGATAAGAACCACCCCTGTGAATTCAGAATTCAAGATCATTGGTTTGAGTGACAGAAATTGCAACGAACAGATGTTTTCGTTGAGGCAGAGGAATGGGAACAATGGGGATGTTGATGAAGTTGAAGTTACAGTCTATGATTACTTTGTGAAAAACAAAGGCATAGAGCTGCGCTATTCTGGCAATCTTCCTTGCATAAATGTGGGGAAACCAAAGCGTCCAACTTATTTTCCAATAGAGCTATGCTCTCTTATTCCACTACAAAGATACACCAAAGCTTTGTCAACACTGCAAAGGTCCTCCCTTGTTGAGAAATCCAGACAGAAGCCCCAGGAAAGAATGTCAGTCCTTAATGATGCACTTCGACATAGTAATTATGATTCTGATCCCATGTTGAGGGCATCTGGCATTTCAATTGCCCAAAATTTTACTCAAGTTGAAGGAAGGGTCCTGCAACCCCCAAAGCTGAAAGCTGGCAATGGTGAAGATATATTCCCACGCAATGGTCGGTGGAACTTCAACAATAAGAAACTGATTCAGACCTGTTCTGTCGATAAGTGGGCAGTAGTTAATTTCTCTGCACGCTGTGATGTGCGAAATCTTATCCGGGACCTCATAAGAAATGCATCTGCGAAGGGGATTCAAATGGCCGAACCTTTTGATGTGTTTGAAGAGAGCCCCTCATTGAGGCGAGCACCTGTATCAAGAAGAGTAGATGATATGTTTGAACAGATAAAATCGAAACTTCCTGGAGCTCCGAAATTCCTCTTGTGCCTTCTTCCTGAGAGGAAAAATTGTGAAGTTTATGGTCCTTGGAAGAGGAAGTGTCTTGCTGAATTCGGTATTGTCACACAATGCCTTGCTCCACAAAGAGTCAATGATCAGTACCTACTCAATTTGCTATTGAAGATAAATGCCAAGCTTGGTGGAATAAACTCATTGCTGCAAATTGAAGCATCCCCTTCAATACCTCTTGTATCGAAGACACCTACCATCATCTTAGGTATGGATGTGTCACACGGTCAACCAGGACAATCTGATAGACCTTCCATTGCTGCGGTGGTTAGCTCTCGCCAATGGCCTCTCATCTCTAAATACAGAGCATCGGTGCACACTCAGTCACCTAAGCTAGAAATGATGTCTTCCTTGTTTAAGCCACGAGGAACTGAAGATGATGGCCTCATTCGGGAATCGCTGATTGACTTCTACACTAGTTCTGGAAAACGGAAACCGGATCATGTTATCGTTTTCAGGGATGGAGTTAGTGAAAGCCAGTTTACTCAGGTCATTAACATTGAGCTTGATCAGATCATTGAGGCATGCAAATTTCTCGATGAGAAGTGGTCACCAAAGTTCACAGTGATTGTTGCTCAGAAGAATCATCATACCAAATTTTTTCAGTCTGGATCTCCAGATAATGTTCCGCCAGGTACTGTTGTGGACAAACAAGTGTGCCATCCAAGGAATTATGACTTCTACATGTGTGCTCATGCTGGAATGATTGGAACGACGAGGCCAACACATTATCATGTTCTGCACGATGAGATAGGTTTCTCCCCTGATGATCTGCAGGAGCTAGTGCACTCACTCTCTTATGTGTATCAGAGAAGCACAACAGCCATATCAGTTGTTGCTCCGATTTGCTATGCCCATCTTGCTGCTGCTCAGGTGGGCACATTCCTCAAGTTCGAAGATATGTCGGACGCGTCGTCCAGCCAAGGAGGTCATACGTCTGTCGGAAGTGTACCGGTGCCTGAGCTGCCTCGCCTCCATGAGAAAGTGAGGAGCTCCATGTTTTTCTGCTGA
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| Protein seq | MDAHDGEADELPPPPPVPANVVPIKADDVESEVPANKPAKPKRFPMARPGLGRKGQPIQLLANHYKVSVKSSEEYFFHYNVILKYEDDRPVDGKGVGRKVIDKLQQTYRSELSSKDFAYDGEKSLFTIGALPQVTNEFTVVLEDVSTGKTAANGSPGGNDSPGGSDRKRVRRPYQTKTFKVELCFAAKIPMNAIAQAIKGQESENSQEALRVLDIILRQHSAKQGCLLVRQSFFHNNPNNFVDLGGGVMGCRGFHSSFRGTQSGLSLNIDVSTTMIVKPGPVIDFLLANQKVDHPDRIDWQKAKRALKNLRIRTTPVNSEFKIIGLSDRNCNEQMFSLRQRNGNNGDVDEVEVTVYDYFVKNKGIELRYSGNLPCINVGKPKRPTYFPIELCSLIPLQRYTKALSTLQRSSLVEKSRQKPQERMSVLNDALRHSNYDSDPMLRASGISIAQNFTQVEGRVLQPPKLKAGNGEDIFPRNGRWNFNNKKLIQTCSVDKWAVVNFSARCDVRNLIRDLIRNASAKGIQMAEPFDVFEESPSLRRAPVSRRVDDMFEQIKSKLPGAPKFLLCLLPERKNCEVYGPWKRKCLAEFGIVTQCLAPQRVNDQYLLNLLLKINAKLGGINSLLQIEASPSIPLVSKTPTIILGMDVSHGQPGQSDRPSIAAVVSSRQWPLISKYRASVHTQSPKLEMMSSLFKPRGTEDDGLIRESLIDFYTSSGKRKPDHVIVFRDGVSESQFTQVINIELDQIIEACKFLDEKWSPKFTVIVAQKNHHTKFFQSGSPDNVPPGTVVDKQVCHPRNYDFYMCAHAGMIGTTRPTHYHVLHDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGTFLKFEDMSDASSSQGGHTSVGSVPVPELPRLHEKVRSSMFFC
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g06770 | LOC_Os04g06770.2 | Chr04 | 3555220 | 3562793 | - | MSU_osa1r7 | ||
| CDS seq | ATGGACGCTCATGATGGTGAGGCCGATGAGTTGCCGCCGCCTCCTCCCGTACCTGCAAATGTGGTGCCTATTAAAGCTGATGACGTTGAGAGCGAGGTGCCAGCAAACAAACCAGCAAAACCTAAGCGGTTTCCAATGGCCAGGCCTGGTTTAGGGAGAAAAGGACAGCCAATCCAGCTCTTGGCGAATCATTACAAAGTTTCTGTGAAGAGTAGTGAAGAATATTTCTTCCACTACAATGTTATTCTGAAGTATGAGGATGATCGACCGGTTGATGGGAAAGGGGTAGGTCGAAAGGTGATTGATAAACTGCAGCAAACCTACCGTTCTGAGCTTTCAAGCAAGGACTTTGCCTATGATGGTGAAAAGAGCCTGTTTACAATTGGTGCTCTTCCACAAGTAACTAATGAGTTCACAGTGGTGTTGGAGGATGTTTCAACTGGAAAGACTGCTGCCAATGGAAGCCCTGGAGGTAATGACAGCCCTGGAGGTAGTGACAGGAAGAGAGTTAGGAGACCATACCAGACCAAGACTTTCAAAGTGGAGCTGTGCTTTGCAGCAAAGATCCCTATGAATGCAATTGCTCAGGCCATAAAAGGTCAAGAATCAGAGAACTCCCAAGAAGCTCTCAGAGTTCTTGATATAATATTAAGGCAGCACTCTGCTAAACAGGGCTGCCTTTTAGTACGCCAGTCATTTTTCCACAACAATCCTAATAACTTTGTTGACCTGGGTGGTGGTGTGATGGGCTGTCGAGGATTCCATTCAAGTTTCCGTGGCACACAGAGTGGACTTTCTCTGAATATCGATGTTTCGACAACTATGATTGTTAAACCTGGTCCTGTTATCGATTTTCTTCTTGCCAACCAGAAAGTTGATCACCCTGACAGAATTGATTGGCAAAAGGCCAAGCGTGCTCTCAAGAACTTGAGGATAAGAACCACCCCTGTGAATTCAGAATTCAAGATCATTGGTTTGAGTGACAGAAATTGCAACGAACAGATGTTTTCGTTGAGGCAGAGGAATGGGAACAATGGGGATGTTGATGAAGTTGAAGTTACAGTCTATGATTACTTTGTGAAAAACAAAGGCATAGAGCTGCGCTATTCTGGCAATCTTCCTTGCATAAATGTGGGGAAACCAAAGCGTCCAACTTATTTTCCAATAGAGCTATGCTCTCTTATTCCACTACAAAGATACACCAAAGCTTTGTCAACACTGCAAAGGTCCTCCCTTGTTGAGAAATCCAGACAGAAGCCCCAGGAAAGAATGTCAGTCCTTAATGATGCACTTCGACATAGTAATTATGATTCTGATCCCATGTTGAGGGCATCTGGCATTTCAATTGCCCAAAATTTTACTCAAGTTGAAGGAAGGGTCCTGCAACCCCCAAAGCTGAAAGCTGGCAATGGTGAAGATATATTCCCACGCAATGGTCGGTGGAACTTCAACAATAAGAAACTGATTCAGACCTGTTCTGTCGATAAGTGGGCAGTAGTTAATTTCTCTGCACGCTGTGATGTGCGAAATCTTATCCGGGACCTCATAAGAAATGCATCTGCGAAGGGGATTCAAATGGCCGAACCTTTTGATGTGTTTGAAGAGAGCCCCTCATTGAGGCGAGCACCTGTATCAAGAAGAGTAGATGATATGTTTGAACAGATAAAATCGAAACTTCCTGGAGCTCCGAAATTCCTCTTGTGCCTTCTTCCTGAGAGGAAAAATTGTGAAGTTTATGGTCCTTGGAAGAGGAAGTGTCTTGCTGAATTCGGTATTGTCACACAATGCCTTGCTCCACAAAGAGTCAATGATCAGTACCTACTCAATTTGCTATTGAAGATAAATGCCAAGCTTGGTGGAATAAACTCATTGCTGCAAATTGAAGCATCCCCTTCAATACCTCTTGTATCGAAGACACCTACCATCATCTTAGGTATGGATGTGTCACACGGTCAACCAGGACAATCTGATAGACCTTCCATTGCTGCGGTGGTTAGCTCTCGCCAATGGCCTCTCATCTCTAAATACAGAGCATCGGTGCACACTCAGTCACCTAAGCTAGAAATGATGTCTTCCTTGTTTAAGCCACGAGGAACTGAAGATGATGGCCTCATTCGGGAATCGCTGATTGACTTCTACACTAGTTCTGGAAAACGGAAACCGGATCATGTTATCGTTTTCAGGGATGGAGTTAGTGAAAGCCAGTTTACTCAGGTCATTAACATTGAGCTTGATCAGATCATTGAGGCATGCAAATTTCTCGATGAGAAGTGGTCACCAAAGTTCACAGTGATTGTTGCTCAGAAGAATCATCATACCAAATTTTTTCAGTCTGGATCTCCAGATAATGTTCCGCCAGGTACTGTTGTGGACAAACAAGTGTGCCATCCAAGGAATTATGACTTCTACATGTGTGCTCATGCTGGAATGATTGGAACGACGAGGCCAACACATTATCATGTTCTGCACGATGAGATAGGTTTCTCCCCTGATGATCTGCAGGAGCTAGTGCACTCACTCTCTTATGTGTATCAGAGAAGCACAACAGCCATATCAGTTGTTGCTCCGATTTGCTATGCCCATCTTGCTGCTGCTCAGGTGGGCACATTCCTCAAGTTCGAAGATATGTCGGACGCGTCGTCCAGCCAAGGAGGTCATACGTCTGTCGGAAGTGTACCGGTGCCTGAGCTGCCTCGCCTCCATGAGAAAGTGAGGAGCTCCATGTTTTTCTGCTGA
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| Protein seq | MDAHDGEADELPPPPPVPANVVPIKADDVESEVPANKPAKPKRFPMARPGLGRKGQPIQLLANHYKVSVKSSEEYFFHYNVILKYEDDRPVDGKGVGRKVIDKLQQTYRSELSSKDFAYDGEKSLFTIGALPQVTNEFTVVLEDVSTGKTAANGSPGGNDSPGGSDRKRVRRPYQTKTFKVELCFAAKIPMNAIAQAIKGQESENSQEALRVLDIILRQHSAKQGCLLVRQSFFHNNPNNFVDLGGGVMGCRGFHSSFRGTQSGLSLNIDVSTTMIVKPGPVIDFLLANQKVDHPDRIDWQKAKRALKNLRIRTTPVNSEFKIIGLSDRNCNEQMFSLRQRNGNNGDVDEVEVTVYDYFVKNKGIELRYSGNLPCINVGKPKRPTYFPIELCSLIPLQRYTKALSTLQRSSLVEKSRQKPQERMSVLNDALRHSNYDSDPMLRASGISIAQNFTQVEGRVLQPPKLKAGNGEDIFPRNGRWNFNNKKLIQTCSVDKWAVVNFSARCDVRNLIRDLIRNASAKGIQMAEPFDVFEESPSLRRAPVSRRVDDMFEQIKSKLPGAPKFLLCLLPERKNCEVYGPWKRKCLAEFGIVTQCLAPQRVNDQYLLNLLLKINAKLGGINSLLQIEASPSIPLVSKTPTIILGMDVSHGQPGQSDRPSIAAVVSSRQWPLISKYRASVHTQSPKLEMMSSLFKPRGTEDDGLIRESLIDFYTSSGKRKPDHVIVFRDGVSESQFTQVINIELDQIIEACKFLDEKWSPKFTVIVAQKNHHTKFFQSGSPDNVPPGTVVDKQVCHPRNYDFYMCAHAGMIGTTRPTHYHVLHDEIGFSPDDLQELVHSLSYVYQRSTTAISVVAPICYAHLAAAQVGTFLKFEDMSDASSSQGGHTSVGSVPVPELPRLHEKVRSSMFFC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.864811 | 3.423014 | 3.602441 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0151800 | RBH | 4.201754 | 7.055628 | 19.226372 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g16870 | RBH | 6.904422 | 5.103039 | 13.811574 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0151800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001830 | RBH | 1.493721 | 29.755175 | 19.273375 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0002060 | RBH | 0.661068 | 5.536219 | 7.929767 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001950 | RBH | 2.814387 | 18.590780 | 23.531288 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001990 | RBH | 0.452527 | 1.038472 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0002000 | RBH | 15.381826 | 36.362259 | 46.365429 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0050800 | RBH | 25.332401 | 40.6607175 | 87.3684615 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0002020 | RBH | 0.878774 | 2.335853 | 4.108642 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0053300 | RBH | 18.4428225 | 37.97212 | 151.659073 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0001970 | RBH | 0.307493 | 0.139527 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0002240 | RBH | 1.795655 | 38.754055 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0002080 | RBH | 14.707232 | 47.809368 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0001890 | RBH | 1.765869 | 2.521606 | 3.465488 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0001960 | RBH | 0.834923 | 11.489400 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G002100 | RBH | 1.171863 | 11.380495 | 8.769042 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0002010 | RBH | 5.136454 | 29.843716 | 23.602791 |
