Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
LOC_Os04g06650 | OGI:04011540 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:3503273-3505204 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ATGGCAGCGCCGGCTGACGCATGGGCATGGCGAAAAGGGCAGCCGGGGGAGATGCCGCCGAGGAGGAAGGAGAAGCCGGCGCGGGCGACGGTGTTCCGGCGAAGTTCGGGCGAGGAGGAGGTGATGCCGGGGATGAGAGCGGCGTCGTGGAGCCGAGGAAGGTGGTGGCGGCGTCGGCCGGCGCTCCGGGGACGTGGCAGAGGCGGCCGGAGGCGGAGAAGTGGTGGCGACGCCACTGGACGCCGGCGAGGACGCGTCTCCGGTGCTTTCCCCGCGAAACGGAGGGCTGACCGAGGGAGAGGGGGCAGCTGCGACGCCGGGAGAGGTGGCGGCGCAGCCGGAGGGTGCACAGGTGAGGCGGGAGGTGCGGCTGGAGGTGGCCGGCTCGGAGAAAAGAGGAGGGCGACGGCGGGAAGGCAGCTCCGGGGGTCACCTCGCGAAACGGAGGGCAAGCCGGGGTGGAGGAGGTGGCGGCGACGCTGGAGGAGGCGACGGCGCGGCCGGACGACGCTCCGGCGAGGCGGGAGAGGCGGCTGGAGGCCGGCCGGCAACGTGGGAGAGAGAGGGCGACGGTGGGGAGGTGGCTAGAGACCACGGGAGAGCTCGGGAAGAGGCTAAAACGGTAGAACGTAAAGAGGGGGTTCTATTTTATATGAGAGAAGAGGGAGCCGGCCACGGGAGAGGTCGGAACGGCGGCGGAAAAGCCGGCCGGCGGCAATGGAAGGCGGCCGGACTTGGCGCGGCCGTTCCCGGCGATTGGGGGCGGCATTCAAAGGGGAAATTAGGGGGAAATGAAGAGGAGTCAATGGGGATTAATTTCCCCTATTTAATTTTGGGAATCCCATTGCTTGATTCGCGCGGATTTGAGGGAGGAACGAAGCTAGGTTTTCGGGGAGAGAGAGAGGAGGCCGGCTGGGAGGAGGAAGAAGGCGACGGCGGCCTGACGCGTGGGCCCCGCGCGGCCAGGCGCGCGCCCAGCACACGCGCGGCGCACATGCGCGGCAGGGAGGCGGCTCGGGCTTGGCGCGGCTTGGGCCGATTGTCCGGCCCAAGAGGAGAGGAGGGGAGTCGGCCTGGGGAAGAGAGGGAGGAGGAGGGAGTGGGCCGGGAGGGGAAGAGGGGCCCAAGAGAAAGAGAGGGAAGGAAAAAGAGAGGGAGGAGGGAAGAACTTCGGCCACGGGCCGAGGGAGAGAGAGAGGACTTTGGGCCAGACTTGGCCCAAAGGAGGAAGAGGACATTTTTTAGATTTTTTTCTTTTTAATAAACTTTGTTAATTGTTGTTGTTGTTTAATAATTATTTCCGGCGCTCTGAAAATTCAAGTAAAATTTGAGGGCTCCTTTTAGACCAAGGAGAATTTAACAAAAATTCTCCGGGCCACATTTGAATTTTTCTTGCACGTATTTTAGTGTTTGCCAATTTCTTTCCGAATTTTAATTAATTCTATTATTCCTTTTAGAAAATGAATTTTATTTCGGGATGAATTTATCAGGACGTGACAAATCCACCCCCCTTACAAGAATCTCGTCCCCGAGATTCGAGGAGGCTAGCAAGAAGATAGGTTGGGCGGTCTTCTCTTCTTGTCTGACTTCTTCCGCTCCGTCTTCTATAACAAACTTGCCTAACAAAACTTCTTCACTCTGGACTGCTTGGCTCGATCTCCTGTTGCAGATGGAATCTTCTCTTCACCTGACTTGTCCCTGGTTGAACCTTTAGCTGACTTCGACTGGGTTGCGGCACTTGAAGATGGGGCTTCAGTTCCAGAACTTTGCATAGTTCATATCTTTGGAGTCAACCTCATACAAGTTACCCACTTCATGTCATGCGTCGAGATCAGCTCGTCATTACTAAGATACCATGCTTGTCATCATTTAGCATTCAAAGTATTCCTTTACACATTCAGCCCTGACGTATTCTTTTTAGATTTCTCTTAA
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CDS seq | ATGGCAGCGCCGGCTGACGCATGGGCATGGCGAAAAGGGCAGCCGGGGGAGATGCCGCCGAGGAGGAAGGAGAAGCCGGCGCGGGCGACGGTGTTCCGGCGAAGTTCGGGCGAGGAGGAGGTGATGCCGGGGATGAGAGCGGCGTCGTGGAGCCGAGGAAGGTGGTGGCGGCGTCGGCCGGCGCTCCGGGGACGTGGCAGAGGCGGCCGGAGGCGGAGAAGTGGTGGCGACGCCACTGGACGCCGGCGAGGACGCGTCTCCGGTGCTTTCCCCGCGAAACGGAGGGCTGACCGAGGGAGAGGGGGCAGCTGCGACGCCGGGAGAGGTGGCGGCGCAGCCGGAGGGTGCACAGATGGAATCTTCTCTTCACCTGACTTGTCCCTGGTTGAACCTTTAGCTGACTTCGACTGGGTTGCGGCACTTGAAGATGGGGCTTCAGTTCCAGAACTTTGCATAGTTCATATCTTTGGAGTCAACCTCATACAAGTTACCCACTTCATGTCATGCGTCGAGATCAGCTCGTCATTACTAAGATACCATGCTTGTCATCATTTAGCATTCAAAGTATTCCTTTACACATTCAGCCCTGACGTATTCTTTTTAGATTTCTCTTAA
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Protein seq | MAAPADAWAWRKGQPGEMPPRRKEKPARATVFRRSSGEEEVMPGMRAASWSRGRWWRRRPALRGRGRGGRRRRSGGDATGRRRGRVSGAFPAKRRADRGRGGSCDAGRGGGAAGGCTDGIFSSPDLSLVEPLADFDWVAALEDGASVPELCIVHIFGVNLIQVTHFMSCVEISSSLLRYHACHHLAFKVFLYTFSPDVFFLDFS |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
LOC_Os04g06650 | LOC_Os04g06650.1 | Chr04 | 3503273 | 3505204 | + | MSU_osa1r7 | ||
CDS seq | ATGGCAGCGCCGGCTGACGCATGGGCATGGCGAAAAGGGCAGCCGGGGGAGATGCCGCCGAGGAGGAAGGAGAAGCCGGCGCGGGCGACGGTGTTCCGGCGAAGTTCGGGCGAGGAGGAGGTGATGCCGGGGATGAGAGCGGCGTCGTGGAGCCGAGGAAGGTGGTGGCGGCGTCGGCCGGCGCTCCGGGGACGTGGCAGAGGCGGCCGGAGGCGGAGAAGTGGTGGCGACGCCACTGGACGCCGGCGAGGACGCGTCTCCGGTGCTTTCCCCGCGAAACGGAGGGCTGACCGAGGGAGAGGGGGCAGCTGCGACGCCGGGAGAGGTGGCGGCGCAGCCGGAGGGTGCACAGATGGAATCTTCTCTTCACCTGACTTGTCCCTGGTTGAACCTTTAGCTGACTTCGACTGGGTTGCGGCACTTGAAGATGGGGCTTCAGTTCCAGAACTTTGCATAGTTCATATCTTTGGAGTCAACCTCATACAAGTTACCCACTTCATGTCATGCGTCGAGATCAGCTCGTCATTACTAAGATACCATGCTTGTCATCATTTAGCATTCAAAGTATTCCTTTACACATTCAGCCCTGACGTATTCTTTTTAGATTTCTCTTAA
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Protein seq | MAAPADAWAWRKGQPGEMPPRRKEKPARATVFRRSSGEEEVMPGMRAASWSRGRWWRRRPALRGRGRGGRRRRSGGDATGRRRGRVSGAFPAKRRADRGRGGSCDAGRGGGAAGGCTDGIFSSPDLSLVEPLADFDWVAALEDGASVPELCIVHIFGVNLIQVTHFMSCVEISSSLLRYHACHHLAFKVFLYTFSPDVFFLDFS
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | 0.0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g17510 | SBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0015600 | SBH | 0 | 0 | 0 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0388000 | SBH | 0 | 0 | 0 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |