Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os04g06650 OGI:04011540 | 1/16 Nipponbare | IRGSP 1.0 | MSU Chr04:3503273-3505204
Gene Symbol -
DNA seq

ATGGCAGCGCCGGCTGACGCATGGGCATGGCGAAAAGGGCAGCCGGGGGAGATGCCGCCGAGGAGGAAGGAGAAGCCGGCGCGGGCGACGGTGTTCCGGCGAAGTTCGGGCGAGGAGGAGGTGATGCCGGGGATGAGAGCGGCGTCGTGGAGCCGAGGAAGGTGGTGGCGGCGTCGGCCGGCGCTCCGGGGACGTGGCAGAGGCGGCCGGAGGCGGAGAAGTGGTGGCGACGCCACTGGACGCCGGCGAGGACGCGTCTCCGGTGCTTTCCCCGCGAAACGGAGGGCTGACCGAGGGAGAGGGGGCAGCTGCGACGCCGGGAGAGGTGGCGGCGCAGCCGGAGGGTGCACAGGTGAGGCGGGAGGTGCGGCTGGAGGTGGCCGGCTCGGAGAAAAGAGGAGGGCGACGGCGGGAAGGCAGCTCCGGGGGTCACCTCGCGAAACGGAGGGCAAGCCGGGGTGGAGGAGGTGGCGGCGACGCTGGAGGAGGCGACGGCGCGGCCGGACGACGCTCCGGCGAGGCGGGAGAGGCGGCTGGAGGCCGGCCGGCAACGTGGGAGAGAGAGGGCGACGGTGGGGAGGTGGCTAGAGACCACGGGAGAGCTCGGGAAGAGGCTAAAACGGTAGAACGTAAAGAGGGGGTTCTATTTTATATGAGAGAAGAGGGAGCCGGCCACGGGAGAGGTCGGAACGGCGGCGGAAAAGCCGGCCGGCGGCAATGGAAGGCGGCCGGACTTGGCGCGGCCGTTCCCGGCGATTGGGGGCGGCATTCAAAGGGGAAATTAGGGGGAAATGAAGAGGAGTCAATGGGGATTAATTTCCCCTATTTAATTTTGGGAATCCCATTGCTTGATTCGCGCGGATTTGAGGGAGGAACGAAGCTAGGTTTTCGGGGAGAGAGAGAGGAGGCCGGCTGGGAGGAGGAAGAAGGCGACGGCGGCCTGACGCGTGGGCCCCGCGCGGCCAGGCGCGCGCCCAGCACACGCGCGGCGCACATGCGCGGCAGGGAGGCGGCTCGGGCTTGGCGCGGCTTGGGCCGATTGTCCGGCCCAAGAGGAGAGGAGGGGAGTCGGCCTGGGGAAGAGAGGGAGGAGGAGGGAGTGGGCCGGGAGGGGAAGAGGGGCCCAAGAGAAAGAGAGGGAAGGAAAAAGAGAGGGAGGAGGGAAGAACTTCGGCCACGGGCCGAGGGAGAGAGAGAGGACTTTGGGCCAGACTTGGCCCAAAGGAGGAAGAGGACATTTTTTAGATTTTTTTCTTTTTAATAAACTTTGTTAATTGTTGTTGTTGTTTAATAATTATTTCCGGCGCTCTGAAAATTCAAGTAAAATTTGAGGGCTCCTTTTAGACCAAGGAGAATTTAACAAAAATTCTCCGGGCCACATTTGAATTTTTCTTGCACGTATTTTAGTGTTTGCCAATTTCTTTCCGAATTTTAATTAATTCTATTATTCCTTTTAGAAAATGAATTTTATTTCGGGATGAATTTATCAGGACGTGACAAATCCACCCCCCTTACAAGAATCTCGTCCCCGAGATTCGAGGAGGCTAGCAAGAAGATAGGTTGGGCGGTCTTCTCTTCTTGTCTGACTTCTTCCGCTCCGTCTTCTATAACAAACTTGCCTAACAAAACTTCTTCACTCTGGACTGCTTGGCTCGATCTCCTGTTGCAGATGGAATCTTCTCTTCACCTGACTTGTCCCTGGTTGAACCTTTAGCTGACTTCGACTGGGTTGCGGCACTTGAAGATGGGGCTTCAGTTCCAGAACTTTGCATAGTTCATATCTTTGGAGTCAACCTCATACAAGTTACCCACTTCATGTCATGCGTCGAGATCAGCTCGTCATTACTAAGATACCATGCTTGTCATCATTTAGCATTCAAAGTATTCCTTTACACATTCAGCCCTGACGTATTCTTTTTAGATTTCTCTTAA

More
CDS seq

ATGGCAGCGCCGGCTGACGCATGGGCATGGCGAAAAGGGCAGCCGGGGGAGATGCCGCCGAGGAGGAAGGAGAAGCCGGCGCGGGCGACGGTGTTCCGGCGAAGTTCGGGCGAGGAGGAGGTGATGCCGGGGATGAGAGCGGCGTCGTGGAGCCGAGGAAGGTGGTGGCGGCGTCGGCCGGCGCTCCGGGGACGTGGCAGAGGCGGCCGGAGGCGGAGAAGTGGTGGCGACGCCACTGGACGCCGGCGAGGACGCGTCTCCGGTGCTTTCCCCGCGAAACGGAGGGCTGACCGAGGGAGAGGGGGCAGCTGCGACGCCGGGAGAGGTGGCGGCGCAGCCGGAGGGTGCACAGATGGAATCTTCTCTTCACCTGACTTGTCCCTGGTTGAACCTTTAGCTGACTTCGACTGGGTTGCGGCACTTGAAGATGGGGCTTCAGTTCCAGAACTTTGCATAGTTCATATCTTTGGAGTCAACCTCATACAAGTTACCCACTTCATGTCATGCGTCGAGATCAGCTCGTCATTACTAAGATACCATGCTTGTCATCATTTAGCATTCAAAGTATTCCTTTACACATTCAGCCCTGACGTATTCTTTTTAGATTTCTCTTAA

More
Protein seq

MAAPADAWAWRKGQPGEMPPRRKEKPARATVFRRSSGEEEVMPGMRAASWSRGRWWRRRPALRGRGRGGRRRRSGGDATGRRRGRVSGAFPAKRRADRGRGGSCDAGRGGGAAGGCTDGIFSSPDLSLVEPLADFDWVAALEDGASVPELCIVHIFGVNLIQVTHFMSCVEISSSLLRYHACHHLAFKVFLYTFSPDVFFLDFS

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os04g06650 LOC_Os04g06650.1 Chr04 3503273 3505204 + MSU_osa1r7
CDS seq

ATGGCAGCGCCGGCTGACGCATGGGCATGGCGAAAAGGGCAGCCGGGGGAGATGCCGCCGAGGAGGAAGGAGAAGCCGGCGCGGGCGACGGTGTTCCGGCGAAGTTCGGGCGAGGAGGAGGTGATGCCGGGGATGAGAGCGGCGTCGTGGAGCCGAGGAAGGTGGTGGCGGCGTCGGCCGGCGCTCCGGGGACGTGGCAGAGGCGGCCGGAGGCGGAGAAGTGGTGGCGACGCCACTGGACGCCGGCGAGGACGCGTCTCCGGTGCTTTCCCCGCGAAACGGAGGGCTGACCGAGGGAGAGGGGGCAGCTGCGACGCCGGGAGAGGTGGCGGCGCAGCCGGAGGGTGCACAGATGGAATCTTCTCTTCACCTGACTTGTCCCTGGTTGAACCTTTAGCTGACTTCGACTGGGTTGCGGCACTTGAAGATGGGGCTTCAGTTCCAGAACTTTGCATAGTTCATATCTTTGGAGTCAACCTCATACAAGTTACCCACTTCATGTCATGCGTCGAGATCAGCTCGTCATTACTAAGATACCATGCTTGTCATCATTTAGCATTCAAAGTATTCCTTTACACATTCAGCCCTGACGTATTCTTTTTAGATTTCTCTTAA

More
Protein seq

MAAPADAWAWRKGQPGEMPPRRKEKPARATVFRRSSGEEEVMPGMRAASWSRGRWWRRRPALRGRGRGGRRRRSGGDATGRRRGRVSGAFPAKRRADRGRGGSCDAGRGGGAAGGCTDGIFSSPDLSLVEPLADFDWVAALEDGASVPELCIVHIFGVNLIQVTHFMSCVEISSSLLRYHACHHLAFKVFLYTFSPDVFFLDFS

More
Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os05g17510 SBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0015600 SBH 0 0 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_08G0388000 SBH 0 0 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.