Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g04770 | OGI:04006410 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:2292020-2292933 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCGTACCTCGGCCAGCCTGCTTAATTAGTTCACACATCATGTTTGTTGTGACAATGTTGCAGCTTCTCCTCCTACTCCTCCTACTCCTCTCCATTTCGCTTGATGTTTCACACCTCATTGCTGAAGCAGCAGCAGCAGCAAAGCCACCTGTGTCCTTCAGCTTCAACTTCTCTGATCCATCCACCTACAGCCTAGATGACCTCCTGTTCGAAGGCGACGCGGCCAAGCCGAAAGACGGGCTGGTCGACCTCAACGCCGGCCGCAGTTGTTATCCCTATTGCCCCGCCGGCCGGATGTCGTACGCTCACCCGGTGCAGCTCTACGACGACACCACCGGCGGCGAAAAGGTGGTGGTGGCCAGCTTCTCCACGAGGTTCACCTTCACAATCAGACCCATCGACGACGGTATCAGAGGGGATGGTCTGGCTTTCTTCCTGGCCAGTTACCCATCTAAGCTGCCGGCCAACTCGTTCGGCGGCAACCTTGGACTCATCCCTGAAGGGACGACCACCGCCTTCGGTTCGGACCGGTTCATCGCCGTCGAGTTCGACACATACAACAACACTTTCGACCCCAAGAGCATCGACCACATTGGCATCGACATCAACTCCGTCGTCAGTTCCTTCAACACCACAATCTTGCCCAACTTCAGTCTGAACGGGACAATGACAGCCCACATCGAATTCAACGGCACAACGCGGATGCTGGTCGCCTCACTGTTGCTCGCTGGCCGTCCATGGTCTGCAGCGCCTGATTATCAGGTGAGTTTACGACTGCCAGATCCGATCACATCGTTGCTCCTGCCGCAGGTGGCCGTGGGTTTTACTGCATCCACCGCGGAATACAAGGAGCTCAACCGGATAATGTTATGGTCATTCAACTCAACTCTTACGCTAGTAAACCAAGGTACCTGA
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| CDS seq | ATGTTTGTTGTGACAATGTTGCAGCTTCTCCTCCTACTCCTCCTACTCCTCTCCATTTCGCTTGATGTTTCACACCTCATTGCTGAAGCAGCAGCAGCAGCAAAGCCACCTGTGTCCTTCAGCTTCAACTTCTCTGATCCATCCACCTACAGCCTAGATGACCTCCTGTTCGAAGGCGACGCGGCCAAGCCGAAAGACGGGCTGGTCGACCTCAACGCCGGCCGCAGTTGTTATCCCTATTGCCCCGCCGGCCGGATGTCGTACGCTCACCCGGTGCAGCTCTACGACGACACCACCGGCGGCGAAAAGGTGGTGGTGGCCAGCTTCTCCACGAGGTTCACCTTCACAATCAGACCCATCGACGACGGTATCAGAGGGGATGGTCTGGCTTTCTTCCTGGCCAGTTACCCATCTAAGCTGCCGGCCAACTCGTTCGGCGGCAACCTTGGACTCATCCCTGAAGGGACGACCACCGCCTTCGGTTCGGACCGGTTCATCGCCGTCGAGTTCGACACATACAACAACACTTTCGACCCCAAGAGCATCGACCACATTGGCATCGACATCAACTCCGTCGTCAGTTCCTTCAACACCACAATCTTGCCCAACTTCAGTCTGAACGGGACAATGACAGCCCACATCGAATTCAACGGCACAACGCGGATGCTGGTCGCCTCACTGTTGCTCGCTGGCCGTCCATGGTCTGCAGCGCCTGATTATCAGGTGGCCGTGGGTTTTACTGCATCCACCGCGGAATACAAGGAGCTCAACCGGATAATGTTATGGTCATTCAACTCAACTCTTACGCTAGTAAACCAAGGTACCTGA
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| Protein seq | MFVVTMLQLLLLLLLLLSISLDVSHLIAEAAAAAKPPVSFSFNFSDPSTYSLDDLLFEGDAAKPKDGLVDLNAGRSCYPYCPAGRMSYAHPVQLYDDTTGGEKVVVASFSTRFTFTIRPIDDGIRGDGLAFFLASYPSKLPANSFGGNLGLIPEGTTTAFGSDRFIAVEFDTYNNTFDPKSIDHIGIDINSVVSSFNTTILPNFSLNGTMTAHIEFNGTTRMLVASLLLAGRPWSAAPDYQVAVGFTASTAEYKELNRIMLWSFNSTLTLVNQGT |
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| Function | Bark agglutinin I polypeptide B [UniProtKB/Swiss-Prot:Q42372] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g04770 | LOC_Os04g04770.1 | Chr04 | 2292020 | 2292933 | + | MSU_osa1r7 | ||
| CDS seq | ATGTTTGTTGTGACAATGTTGCAGCTTCTCCTCCTACTCCTCCTACTCCTCTCCATTTCGCTTGATGTTTCACACCTCATTGCTGAAGCAGCAGCAGCAGCAAAGCCACCTGTGTCCTTCAGCTTCAACTTCTCTGATCCATCCACCTACAGCCTAGATGACCTCCTGTTCGAAGGCGACGCGGCCAAGCCGAAAGACGGGCTGGTCGACCTCAACGCCGGCCGCAGTTGTTATCCCTATTGCCCCGCCGGCCGGATGTCGTACGCTCACCCGGTGCAGCTCTACGACGACACCACCGGCGGCGAAAAGGTGGTGGTGGCCAGCTTCTCCACGAGGTTCACCTTCACAATCAGACCCATCGACGACGGTATCAGAGGGGATGGTCTGGCTTTCTTCCTGGCCAGTTACCCATCTAAGCTGCCGGCCAACTCGTTCGGCGGCAACCTTGGACTCATCCCTGAAGGGACGACCACCGCCTTCGGTTCGGACCGGTTCATCGCCGTCGAGTTCGACACATACAACAACACTTTCGACCCCAAGAGCATCGACCACATTGGCATCGACATCAACTCCGTCGTCAGTTCCTTCAACACCACAATCTTGCCCAACTTCAGTCTGAACGGGACAATGACAGCCCACATCGAATTCAACGGCACAACGCGGATGCTGGTCGCCTCACTGTTGCTCGCTGGCCGTCCATGGTCTGCAGCGCCTGATTATCAGGTGGCCGTGGGTTTTACTGCATCCACCGCGGAATACAAGGAGCTCAACCGGATAATGTTATGGTCATTCAACTCAACTCTTACGCTAGTAAACCAAGGTACCTGA
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| Protein seq | MFVVTMLQLLLLLLLLLSISLDVSHLIAEAAAAAKPPVSFSFNFSDPSTYSLDDLLFEGDAAKPKDGLVDLNAGRSCYPYCPAGRMSYAHPVQLYDDTTGGEKVVVASFSTRFTFTIRPIDDGIRGDGLAFFLASYPSKLPANSFGGNLGLIPEGTTTAFGSDRFIAVEFDTYNNTFDPKSIDHIGIDINSVVSSFNTTILPNFSLNGTMTAHIEFNGTTRMLVASLLLAGRPWSAAPDYQVAVGFTASTAEYKELNRIMLWSFNSTLTLVNQGT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0140666 | SBH | 0.0 | 0.0 | 0.400213 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g04690 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0140666 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001390 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0001450 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001410 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001480 | SBH | 0.0 | 0.127481 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0001420 | SBH | 0.0 | 8.169488 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0001640 | SBH | 0.0 | 0.000000 | 0.049154 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0031300 | SBH | 0.2481005 | 0.426025 | 0.101301 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0001430 | RBH | 0.0 | 0.295070 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0001630 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0001380 | RBH | 0.0 | 0.519242 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0001540 | SBH | 0.0 | 1.500981 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001580 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
