Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g63240 | OGI:03099920 | 12/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:35729881-35732118 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGCACCTCTTTATGATTATCTCTGTGCCTCCTTGTACTCCTGATCAGCCCATCCTAAGCTCAATTCGGTCAGTTTTTTCTTCTTTCCGAGATTTGCTGCTTTTGCATCAGCTTTTGTCACATTTTCCAGTTGTGTTAGCTCTAGTCGACCACCAAGGTCCGACTGCCGCAGCTCTCCCAAATCACTGCAGCCAGAGCAAGCACCAGCTACAAAGCATGTAAGCGTCTGTAGGCAAGTGAGGTGTCCGAGGTTCGGAGGCATGCTTTTTAACCTCTCACATCCGTGAGTGTACAGGTGACGGAGGGCAGTCATGTACTTCGTTCCCTTTGGAAGTCGATGAAGATTGCTACAGTGGGAAAGGTTCAGCGTTTGCAGATGATATAGGATGCTTATGTCTTCAGGAAGTGCTTTAATTTCACTGCATGAGAGATCAAGATACCTCAGGTGATGATGATATTTTGGTTTCAGGATTATACCTCCCCAGATCTCTAATGCTCGCAATGACCTGTATTTTGATAAATTCTGTAAATCTTCATTTTGCGAGGAATATATCAATGTTTGGATACCGGGATATCCTTTCTCTAGGGAAGAATTAAGAATAACTTCTGGTCTATCACCTGACAAAAATAAATGGCGAGCGGAATAAGGGAAGTCCTCACTTCCAATACTTTCTGAATCTATGGCAGCACATTCTTTTCCCATGGAAGATTGTGCAACATCATGCATAAGATCATGGATCTTAGCAGTAATCTTAGAGTCCTTTATATCATGGAACTCAAATGGGATCCCCTTCACATCCTGAAAAAATGACCTTGACACCAACTCACTGAAAATTCTTTTACCACTGATTTCAGGGCACTCTCCTTGTTGCTCTGGGATAAAACAATTGGCCATCCATAATTGGATCAACATTTCCACATCAATCACATGATCCTTGGGAAAAATAGCACAGAAAGCAAAGCACTGCCGCATATATGATGGCAAGCAATTGTAACTAAGCTTTAGTATTGGTAAAATTCCATTTTCCTCATCACAAATTGTGCTTCTCCTTAATATAGCCTCCCATTCTTTCTTGGTGGTCTTTGTACGCAGTGTAGAGCCCAATGCTGTTGCAGCTAAAGGGGAACCAGAACATTTCTTGGCAATATCACCAACCATTTCGAGTAGCTCAGATTGCCTTTTCTCTTCTTCTGAATTGAAAGCACTTCTCTCGATAATTTCCTTTATAAAGTTTTCATTCAAGTCCTTGAGATGATGAACTTCTTTAGGTGGAGCCATTATTTCAGCAACTGTTTTATCACGGGTTGTTGTCAAAACTGAGCTACCGCTGCCACCATGCTGAACGTAGGACTTGAGCGCTTCCCACTTACTAGCCTCACGGTTCCAGACGTCATCCAATACGAGGAGGAACCTCTGCCCATTCACAACTTCTTTAAATTCAGCCCTTTCATTACAGTTCTTCTGTTTGCGAGCTGCTTCAACTATGCTTTTGGCCAGCGAATCCACATCGAAGTTGTCAGAGACACACACCCACAGGAGCAACTGAAAATGCTTCTGAATTTGAGGGTCATTGTAAATGAGCTGCGCTAAGGTGGTCTTGCCCATCCCCCCCATTCCTACAATGGGAATAACAGTGAGATCCCCATTGCTGGCTTGAGAAAGCAATGACTTGACAATCTTCTGTCTGTCTTCCTCTCTTGATCTGTTGGCAATGTCCATAGAATGTTCAGAAATTTTAGAATCCGTCTTCCTCCATTTCATGGACGACATTGGTGGCTCTGGTCGGAATTTAAACCTAAAGGCATTCATCTCTGTAATTAGGACCTCAATTGCATTCAGGATCATCCTGAGCTTGTTGCCCATCCTGTAACGGAACACAATACGGTTGTGAGTAGGAAAGAGCTTTATTACATCCATGCCGAGCATCTTATACTGCCAATTGGCCTTGGCTTTGCGGCGGAGGGCCTCGTACTTGAATTCGTCGAAGACATCATTGGCCTGGTAGGCCACCTTCCGGAGCTCCTCCAGCCATGCTTTCGCCCCTTCTCTGTGTTTTGCCGCCTGCTCCTCGGCGTCGGCGATGACGTCGAGGATGGCCGGCAGCTTGCGTTTGAGGATCTTGTGCTGCTCCTCCATACCCTCCATGACCTTGTACTGCTCCATGAGATAGCTGGAGGCCTTCTCCTTCACCATGGACACCAGTGGCCCGACCACCATGGTGGCCATTAGCTCCGCCAT
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| CDS seq | ATGGCGGAGCTAATGGCCACCATGGTGGTCGGGCCACTGGTGTCCATGGTGAAGGAGAAGGCCTCCAGCTATCTCATGGAGCAGTACAAGGTCATGGAGGGTATGGAGGAGCAGCACAAGATCCTCAAACGCAAGCTGCCGGCCATCCTCGACGTCATCGCCGACGCCGAGGAGCAGGCGGCAAAACACAGAGAAGGGGCGAAAGCATGGCTGGAGGAGCTCCGGAAGGTGGCCTACCAGGCCAATGATGTCTTCGACGAATTCAAGTACGAGGCCCTCCGCCGCAAAGCCAAGGCCAATTGGCAGTATAAGATGCTCGGCATGGATGTAATAAAGCTCTTTCCTACTCACAACCGTATTGTGTTCCGTTACAGGATGGGCAACAAGCTCAGGATGATCCTGAATGCAATTGAGGTCCTAATTACAGAGATGAATGCCTTTAGGTTTAAATTCCGACCAGAGCCACCAATGTCGTCCATGAAATGGAGGAAGACGGATTCTAAAATTTCTGAACATTCTATGGACATTGCCAACAGATCAAGAGAGGAAGACAGACAGAAGATTGTCAAGTCATTGCTTTCTCAAGCCAGCAATGGGGATCTCACTGTTATTCCCATTGTAGGAATGGGGGGGATGGGCAAGACCACCTTAGCGCAGCTCATTTACAATGACCCTCAAATTCAGAAGCATTTTCAGTTGCTCCTGTGGGTGTGTGTCTCTGACAACTTCGATGTGGATTCGCTGGCCAAAAGCATAGTTGAAGCAGCTCGCAAACAGAAGAACTGTAATGAAAGGGCTGAATTTAAAGAAGTTGTGAATGGGCAGAGGTTCCTCCTCGTATTGGATGACGTCTGGAACCGTGAGGCTAGTAAGTGGGAAGCGCTCAAGTCCTACGTTCAGCATGGTGGCAGCGGTAGCTCAGTTTTGACAACAACCCGTGATAAAACAGTTGCTGAAATAATGGCTCCACCTAAAGAAGTTCATCATCTCAAGGACTTGAATGAAAACTTTATAAAGGAAATTATCGAGAGAAGTGCTTTCAATTCAGAAGAAGAGAAAAGGCAATCTGAGCTACTCGAAATGGTTGGTGATATTGCCAAGAAATGTTCTGGTTCCCCTTTAGCTGCAACAGCATTGGGCTCTACACTGCGTACAAAGACCACCAAGAAAGAATGGGAGGCTATATTAAGGAGAAGCACAATTTGTGATGAGGAAAATGGAATTTTACCAATACTAAAGCTTAGTTACAATTGCTTGCCATCATATATGCGGCAGTGCTTTGCTTTCTGTGCTATTTTTCCCAAGGATCATGTGATTGATGTGGAAATGTTGATCCAATTATGGATGGCCAATTGTTTTATCCCAGAGCAACAAGGAGAGTGCCCTGAAATCAGTGGTAAAAGAATTTTCAGTGAGTTGGTGTCAAGGTCATTTTTTCAGGATGTGAAGGGGATCCCATTTGAGTTCCATGATATAAAGGACTCTAAGATTACTGCTAAGATCCATGATCTTATGCATGATGTTGCACAATCTTCCATGGGAAAAGAATGTGCTGCCATAGATTCAGAAAGTATTGGAAGTGAGGACTTCCCTTATTCCGCTCGCCATTTATTTTTGTCAGGTGATAGACCAGAAGTTATTCTTAATTCTTCCCTAGAGAAAGGATATCCCGGTATCCAAACATTGATATATTCCTCGCAAAATGAAGATTTACAGAATTTATCAAAATACAGGTCATTGCGAGCATTAGAGATCTGGGGAGGTATAATCCTGAAACCAAAATATCATCATCACCTGAGGTATCTTGATCTCTCATGCAGTGAAATTAAAGCACTTCCTGAAGACATAAGCATCCTATATCATCTGCAAACGCTGAACCTTTCCCACTGTAGCAATCTTCATCGACTTCCAAAGGGAACGAAGTACATGACTGCCCTCCGTCACCTGTACACTCACGGATGTGAGAGGTTAAAAAGCATGCCTCCGAACCTCGGACACCTCACTTGCCTACAGACGCTTACATGCTTTGTAGCTGGTGCTTGCTCTGGCTGCAGTGATTTGGGAGAGCTGCGGCAGTCGGACCTTGGTGGTCGACTAGAGCTAACACAACTGGAAAATGTGACAAAAGCTGATGCAAAAGCAGCAAATCTCGGAAAGAAGAAAAAACTGACCGAATTGAGCTTAGGATGGGCTGATCAGGAGTACAAGGAGGCACAGAGATAA
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| Protein seq | MAELMATMVVGPLVSMVKEKASSYLMEQYKVMEGMEEQHKILKRKLPAILDVIADAEEQAAKHREGAKAWLEELRKVAYQANDVFDEFKYEALRRKAKANWQYKMLGMDVIKLFPTHNRIVFRYRMGNKLRMILNAIEVLITEMNAFRFKFRPEPPMSSMKWRKTDSKISEHSMDIANRSREEDRQKIVKSLLSQASNGDLTVIPIVGMGGMGKTTLAQLIYNDPQIQKHFQLLLWVCVSDNFDVDSLAKSIVEAARKQKNCNERAEFKEVVNGQRFLLVLDDVWNREASKWEALKSYVQHGGSGSSVLTTTRDKTVAEIMAPPKEVHHLKDLNENFIKEIIERSAFNSEEEKRQSELLEMVGDIAKKCSGSPLAATALGSTLRTKTTKKEWEAILRRSTICDEENGILPILKLSYNCLPSYMRQCFAFCAIFPKDHVIDVEMLIQLWMANCFIPEQQGECPEISGKRIFSELVSRSFFQDVKGIPFEFHDIKDSKITAKIHDLMHDVAQSSMGKECAAIDSESIGSEDFPYSARHLFLSGDRPEVILNSSLEKGYPGIQTLIYSSQNEDLQNLSKYRSLRALEIWGGIILKPKYHHHLRYLDLSCSEIKALPEDISILYHLQTLNLSHCSNLHRLPKGTKYMTALRHLYTHGCERLKSMPPNLGHLTCLQTLTCFVAGACSGCSDLGELRQSDLGGRLELTQLENVTKADAKAANLGKKKKLTELSLGWADQEYKEAQR |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g63240 | LOC_Os03g63240.1 | Chr03 | 35729881 | 35732118 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGGAGCTAATGGCCACCATGGTGGTCGGGCCACTGGTGTCCATGGTGAAGGAGAAGGCCTCCAGCTATCTCATGGAGCAGTACAAGGTCATGGAGGGTATGGAGGAGCAGCACAAGATCCTCAAACGCAAGCTGCCGGCCATCCTCGACGTCATCGCCGACGCCGAGGAGCAGGCGGCAAAACACAGAGAAGGGGCGAAAGCATGGCTGGAGGAGCTCCGGAAGGTGGCCTACCAGGCCAATGATGTCTTCGACGAATTCAAGTACGAGGCCCTCCGCCGCAAAGCCAAGGCCAATTGGCAGTATAAGATGCTCGGCATGGATGTAATAAAGCTCTTTCCTACTCACAACCGTATTGTGTTCCGTTACAGGATGGGCAACAAGCTCAGGATGATCCTGAATGCAATTGAGGTCCTAATTACAGAGATGAATGCCTTTAGGTTTAAATTCCGACCAGAGCCACCAATGTCGTCCATGAAATGGAGGAAGACGGATTCTAAAATTTCTGAACATTCTATGGACATTGCCAACAGATCAAGAGAGGAAGACAGACAGAAGATTGTCAAGTCATTGCTTTCTCAAGCCAGCAATGGGGATCTCACTGTTATTCCCATTGTAGGAATGGGGGGGATGGGCAAGACCACCTTAGCGCAGCTCATTTACAATGACCCTCAAATTCAGAAGCATTTTCAGTTGCTCCTGTGGGTGTGTGTCTCTGACAACTTCGATGTGGATTCGCTGGCCAAAAGCATAGTTGAAGCAGCTCGCAAACAGAAGAACTGTAATGAAAGGGCTGAATTTAAAGAAGTTGTGAATGGGCAGAGGTTCCTCCTCGTATTGGATGACGTCTGGAACCGTGAGGCTAGTAAGTGGGAAGCGCTCAAGTCCTACGTTCAGCATGGTGGCAGCGGTAGCTCAGTTTTGACAACAACCCGTGATAAAACAGTTGCTGAAATAATGGCTCCACCTAAAGAAGTTCATCATCTCAAGGACTTGAATGAAAACTTTATAAAGGAAATTATCGAGAGAAGTGCTTTCAATTCAGAAGAAGAGAAAAGGCAATCTGAGCTACTCGAAATGGTTGGTGATATTGCCAAGAAATGTTCTGGTTCCCCTTTAGCTGCAACAGCATTGGGCTCTACACTGCGTACAAAGACCACCAAGAAAGAATGGGAGGCTATATTAAGGAGAAGCACAATTTGTGATGAGGAAAATGGAATTTTACCAATACTAAAGCTTAGTTACAATTGCTTGCCATCATATATGCGGCAGTGCTTTGCTTTCTGTGCTATTTTTCCCAAGGATCATGTGATTGATGTGGAAATGTTGATCCAATTATGGATGGCCAATTGTTTTATCCCAGAGCAACAAGGAGAGTGCCCTGAAATCAGTGGTAAAAGAATTTTCAGTGAGTTGGTGTCAAGGTCATTTTTTCAGGATGTGAAGGGGATCCCATTTGAGTTCCATGATATAAAGGACTCTAAGATTACTGCTAAGATCCATGATCTTATGCATGATGTTGCACAATCTTCCATGGGAAAAGAATGTGCTGCCATAGATTCAGAAAGTATTGGAAGTGAGGACTTCCCTTATTCCGCTCGCCATTTATTTTTGTCAGGTGATAGACCAGAAGTTATTCTTAATTCTTCCCTAGAGAAAGGATATCCCGGTATCCAAACATTGATATATTCCTCGCAAAATGAAGATTTACAGAATTTATCAAAATACAGGTCATTGCGAGCATTAGAGATCTGGGGAGGTATAATCCTGAAACCAAAATATCATCATCACCTGAGGTATCTTGATCTCTCATGCAGTGAAATTAAAGCACTTCCTGAAGACATAAGCATCCTATATCATCTGCAAACGCTGAACCTTTCCCACTGTAGCAATCTTCATCGACTTCCAAAGGGAACGAAGTACATGACTGCCCTCCGTCACCTGTACACTCACGGATGTGAGAGGTTAAAAAGCATGCCTCCGAACCTCGGACACCTCACTTGCCTACAGACGCTTACATGCTTTGTAGCTGGTGCTTGCTCTGGCTGCAGTGATTTGGGAGAGCTGCGGCAGTCGGACCTTGGTGGTCGACTAGAGCTAACACAACTGGAAAATGTGACAAAAGCTGATGCAAAAGCAGCAAATCTCGGAAAGAAGAAAAAACTGACCGAATTGAGCTTAGGATGGGCTGATCAGGAGTACAAGGAGGCACAGAGATAA
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| Protein seq | MAELMATMVVGPLVSMVKEKASSYLMEQYKVMEGMEEQHKILKRKLPAILDVIADAEEQAAKHREGAKAWLEELRKVAYQANDVFDEFKYEALRRKAKANWQYKMLGMDVIKLFPTHNRIVFRYRMGNKLRMILNAIEVLITEMNAFRFKFRPEPPMSSMKWRKTDSKISEHSMDIANRSREEDRQKIVKSLLSQASNGDLTVIPIVGMGGMGKTTLAQLIYNDPQIQKHFQLLLWVCVSDNFDVDSLAKSIVEAARKQKNCNERAEFKEVVNGQRFLLVLDDVWNREASKWEALKSYVQHGGSGSSVLTTTRDKTVAEIMAPPKEVHHLKDLNENFIKEIIERSAFNSEEEKRQSELLEMVGDIAKKCSGSPLAATALGSTLRTKTTKKEWEAILRRSTICDEENGILPILKLSYNCLPSYMRQCFAFCAIFPKDHVIDVEMLIQLWMANCFIPEQQGECPEISGKRIFSELVSRSFFQDVKGIPFEFHDIKDSKITAKIHDLMHDVAQSSMGKECAAIDSESIGSEDFPYSARHLFLSGDRPEVILNSSLEKGYPGIQTLIYSSQNEDLQNLSKYRSLRALEIWGGIILKPKYHHHLRYLDLSCSEIKALPEDISILYHLQTLNLSHCSNLHRLPKGTKYMTALRHLYTHGCERLKSMPPNLGHLTCLQTLTCFVAGACSGCSDLGELRQSDLGGRLELTQLENVTKADAKAANLGKKKKLTELSLGWADQEYKEAQR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.171817 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0849500 | RBH | 0.0 | 0.0 | 0.803102 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g63150 | RBH | 0.815256 | 1.233432 | 0.231146 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0849500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0042090 | SBH | 0.0 | 0.0 | 0.159791 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0041780 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0041820 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0042070 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0041630 | RBH | 0.265560 | 4.379875 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0611500 | RBH | 0.0805515 | 0.272327 | 2.499983 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0041360 | RBH | 0.0 | 0.120182 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0612300 | RBH | 0.0041675 | 0.065913 | 0.2810015 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0041900 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0041870 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0041540 | RBH | 0.0 | 5.519635 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0041590 | RBH | 0.0 | 0.172907 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0041660 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G041400 | RBH | 0.000000 | 1.987397 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0041070 | RBH | 0.0 | 4.014271 | 0.0 |
