Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g62330 | OGI:03098620 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:35309856-35310752 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTAATTAAATGCATAATGCTCCAATTGTCTCTTTCCAACCTCCTTTCGAAACCGAAATGAAGGAAATGATGCCTCAGTGCTCAGTGCTTACTTTAGTACTCTCTATTCTATGAATTTAGACACGTAAAGCACATATATACATCAAAACAGCCGAAATTCTGACAAATCGACCTTTAATAAAATTTATTTTGAAAATAGACCCAAAATATTCCTTACTTCCCTAAATGTTTGACGCTGTTGACTTTTTAAAGTATGTTTAACCATTTGTCTTATTCAAAAACTTTTGTGAAATATGTAAAACTATATGTATATATAAAAGTATATTTAACAATAAATCAAATGATAGGAAAAGAATTAATTATTATTTAAATTTTTTTAAATAAGACGAACAGTCAAATATTTTTAAAAAAGTCAACGGCGTCAAACATTTTGGGATAAAGGGAGTATGAATATTTACACAATCTTGTCGCCATAGAGCACCGTGAAGGCTATGTCGTCCTCGTCCTTTGAATTGGCTGACCGTCCCCGCCGCGGCCGCGTGAACGGCAGCACCAGCGATGCCGTGAACCGCGCAGACATGGACCGCCGGTGAGACGACGACGAAGGCGACGGCGTCGTCGTCGAAGCGAGAATGTTCGCCCCCGTGTCGCAGCCGCCATGGGACGCCGCGGCTGCAGGAGGAGGCGCGAGGAGCCTCGGCGGGAGCAGCAGCGTCGATGCTGCCGCCGGCGCCGGCGCCGGAGAAGAAGATGCACTGCTACTTCCGACGGCGGCGCCGCCGCCGCCGTGGTGTGGTTGCTGCTTCGGGACGCCTGGCTGGAGCTCCCACTTGAACGGGATGGTGCCCGGCCTCTTGAACGACTCGTCCAACGCCATTGGCGTCACCAACCAGAGCTT
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| CDS seq | ATGGCGTTGGACGAGTCGTTCAAGAGGCCGGGCACCATCCCGTTCAAGTGGGAGCTCCAGCCAGGCGTCCCGAAGCAGCAACCACACCACGGCGGCGGCGGCGCCGCCGTCGGAAGTAGCAGTGCATCTTCTTCTCCGGCGCCGGCGCCGGCGGCAGCATCGACGCTGCTGCTCCCGCCGAGGCTCCTCGCGCCTCCTCCTGCAGCCGCGGCGTCCCATGGCGGCTGCGACACGGGGGCGAACATTCTCGCTTCGACGACGACGCCGTCGCCTTCGTCGTCGTCTCACCGGCGGTCCATGTCTGCGCGGTTCACGGCATCGCTGGTGCTGCCGTTCACGCGGCCGCGGCGGGGACGGTCAGCCAATTCAAAGGACGAGGACGACATAGCCTTCACGGTGCTCTATGGCGACAAGATTGTGTAA
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| Protein seq | MALDESFKRPGTIPFKWELQPGVPKQQPHHGGGGAAVGSSSASSSPAPAPAAASTLLLPPRLLAPPPAAAASHGGCDTGANILASTTTPSPSSSSHRRSMSARFTASLVLPFTRPRRGRSANSKDEDDIAFTVLYGDKIV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g62330 | LOC_Os03g62330.1 | Chr03 | 35309856 | 35310752 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGTTGGACGAGTCGTTCAAGAGGCCGGGCACCATCCCGTTCAAGTGGGAGCTCCAGCCAGGCGTCCCGAAGCAGCAACCACACCACGGCGGCGGCGGCGCCGCCGTCGGAAGTAGCAGTGCATCTTCTTCTCCGGCGCCGGCGCCGGCGGCAGCATCGACGCTGCTGCTCCCGCCGAGGCTCCTCGCGCCTCCTCCTGCAGCCGCGGCGTCCCATGGCGGCTGCGACACGGGGGCGAACATTCTCGCTTCGACGACGACGCCGTCGCCTTCGTCGTCGTCTCACCGGCGGTCCATGTCTGCGCGGTTCACGGCATCGCTGGTGCTGCCGTTCACGCGGCCGCGGCGGGGACGGTCAGCCAATTCAAAGGACGAGGACGACATAGCCTTCACGGTGCTCTATGGCGACAAGATTGTGTAA
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| Protein seq | MALDESFKRPGTIPFKWELQPGVPKQQPHHGGGGAAVGSSSASSSPAPAPAAASTLLLPPRLLAPPPAAAASHGGCDTGANILASTTTPSPSSSSHRRSMSARFTASLVLPFTRPRRGRSANSKDEDDIAFTVLYGDKIV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.183452 | 0.133031 | 0.022114 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0839800 | RBH | 0.271277 | 0.197791 | 0.085907 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0839800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0041430 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0041130 | RBH | 0.000000 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0041190 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0041420 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0040930 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0602500 | RBH | 0.134434 | 4.8018805 | 0.0161245 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0040670 | RBH | 0.0 | 0.225523 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0605200 | RBH | 0.920861 | 0.432276 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0041280 | RBH | 0.140184 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0040860 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0040920 | RBH | 0.220756 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0040960 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G040740 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0040450 | RBH | 0.0 | 0.0 | 0.0 |
