Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g57190 | OGI:03091310 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:32614060-32618299 | ||||||||
| Gene Symbol | PCF6, OsPCF6 | ||||||||||
| DNA seq | GGCGGCGCCTCCCCAAGGCCGTCCACTGACAGGTGACAGCTACACCAGTGATGAGGCAGTGAGCTGCCGCTGCCGCTGCCGCCGCCGCAGGCAGATCTGACACACGCCGCGCCACTCCAAAGCCTACTTCCGCTGCTGCTGCACGGCACAGCTGCAGCCAGCAGGCAGCAGCAGCAGCAGCAAGCGCCGGCCCGCGCGCGTGACGAGAGAGAGCGCGCGCGCGTGCGAGGCGAGGCCAAAAATCACCCACAAAAGCAAGCGAAAAACACCGCGGAAAAAAAGGGAGCCTCTCTCGCGGAACAAGGCATTGCCCGCCCCGGTCACCGCATTTCGGGATGGAGGCGGCGGTGGGGGACGGGGAAGGCGGTGGCGGCGGCGGCGGGCGGGGGAAGCGTGGGCGGGGAGGAGGAGGAGGGGAGATGGTGGAGGCGGTGTGGGGGCAGACGGGGAGTACGGCGTCGCGGATCTACAGGGTGAGGGCGACGGGGGGGAAGGACAGGCACAGCAAGGTGTACACGGCGAAGGGAATCCGCGACCGCCGCGTCCGCCTCTCCGTCGCCACCGCCATCCAGTTCTACGACCTCCAGGACCGCCTCGGCTTCGACCAGCCGAGCAAGGCCATCGAGTGGCTCATCAACGCCGCCTCCCCCGCCATCGACACCCTCCCGTCCCTCGACCCCGCCGCCTTCGCCGCCATTCCCCACGCCGCCGCCGACGCCGCGCCCACGCGGCGGCGTTCGCAGCAGCAGCAGCAGCAGCTCAGCAACAAGTCCGGATGCAGTAGCACGTCGGAGACCAGCAAGGGGTCGGACAAGGAGGTCACCGTGGCGAGCGCCCCGGCGCAGGCCGCGTCGTTCACTGAGCTGCTCATTGCTGGGGTGGCGGCGTCGTCGGCGGGGGGTGGCGCCATTGGCAACGGCGCCGACTGCGTGGGCATCGCGCACCCCGGGAAAGGAGGCGCGGAGGGGGCGTCCACGTACGGCTTCTCCGCCGCCTCGAGCTTCGGCGACGCGCCACCGATCGGCATGGTGCCGGCGCCGCCGTTCAACTTCTCCGCCCCCGGCGCCGACATGGCGGCGCACTACTCGCTCGCCCAGGACCAGCTGGCGGCGCCTCCGCCTCCTGCCGGAGGCGACTACAACCTCAACTTCTCCATGTCCTCGGGTTTCTTGGGTGCCAATAGGGGGACCCTTCAGTCCAATTCGCCGTCGAACATGTCCGGCCACCACCACCACCACCATCAGCAGCAGCTCCAGAGGCTGGACGGCTCCACCATTTCCTTCCTGCTTGGCCACGCCGCCGCGGCGGCGCACCCGGCGGCGTCCGAGGGCCAGATCACCAGCACCGCCGCGTTGCAGCTGTGGGATGGATTCCGCCACTCCGGCATGAAGGAGAAGAGCAAGAACTGATCGATCCCAGCAACGCATCCTCCAAAGGTAAGAGACTAGATTTCGTAATCTAAGACTAATGTTCGCGCAATTTCGTCATCTTGATTCGATTGCAATCTTCTTGGAAGCCGCTCGAGGTGGCCTCGTTCCCTGAAAAATCCCACTAAAAACTCTTTTGTTGCATTCGACGTGTGTCCCCAAAAACTTTCGAGGCGGGATACCTGCATTTTGCTTTGCATGGATTCAGGCCAAACAGGTGTCGATTGCTCATCGCTGGGGGAAGGATTTCGTAGGAATCAGGCCAATCACATGGGTTCTGAGTTGCACGGATTTGCATTTTTAATGCAATAAACTGTAGGAAGCCATATCTACTCTACGTCGCATTATACACGGAAAAAGGATCGAAGTTAATAGTATGAATTGCATCAACATGAACTGGCAAGCTGTATATACTGTTCGTATGACAATATATGCAGCAAGCCTTGAATGAAGCAAGTTACTGTTCAAATCACAAGAGTTCCTTCTAAGAAAATTATGGAAAATAAGTGAGATCTTTATACAGTAAGAAAAGGTGTTTCATTTATTATTTGCATTGCAATGCGTACTCATTACTAGAACTTACCAGTTCTAGTAGATTATTAAAGCATGATGAACAGTACTTAGCCAAGTAGTAATTGGTTTAATTAGGAAGTTAGAAATTGAAGAAATGCTCTATATGTCTAAAGGAACAGTGCTTTATGATATTTTTTTTTCTGAAGTGAAATGTTGAAATGACACTTTGGTACAACCACATAAAAGCCAAATTAAAGAAGTGAAAAACTTTATGGTCATATATAGCATATAACATCTCAAGGTGGGTTGTGGATCAAACAATAAATTTTAGTAAAGTGAGACCCACTTTAGGCCCTGTTTAGTTTCAAAGTTTTTTTCCAAACTTCCAACTTTCCATCACATCAAACCTTTCATACACACACAACTTTTCTATCACATCGTACCAATTTCAACCAAACCTCCAAACTTCAGTGTGAACTAAACACAGCCTTAGTTTTTAAGAAGGATGCCATAATAAAAGATTTTTCCTAGTACTAACAGAGGTATGCCTGCTCTGAATATGATAATGGAAACCTGGAGTATAAAAGACATTAGATATTTGAAAGTGTTGACAGTACCATAAAGCATTTCTACCTGTGCATGATTAGTTAGTAGTACTTGTTCTCCTATCTGAAGAAAAGATAGAGTTAGTACAGCTCTGAATGATCAACTTTATGAACCTTGGTAGTATTAGATAGTCTTCTATTGATATGTTATAATTGTTTGGTGATCTTATTTATTCCATCATCACAATTCACACTTGTTCTATACAAATTTTCTCAACTAAAGCTTGATATATATGAACCAAAGTTCAGCTCAATTTTGCTTTGGCATTAGAGCCTGTCAAACCAGTGTTAGAAATGAAAATCAATTAAAAAAAATCCTGAAAAGGGTAGGACTTATGTATCTCTTGTGCTTTTCCTTTAATTGGGCTTTGCAAGCTTCCAAAGTGAGCTAGGCACCTTGCATCTTATGGATAGAACGTTGTTTTCCTTCAAATGTTGCAAACTTCCAACTTCGCACTATCTAGTGCAGGTCCATTTGGAAAAATGTTGGCTGATGGGTAGTGTTCCTGGTGGGGGACCTAACCAGGTAGTGTACACGATTACATGTGCAAACCTGACCATTGTTAAGTATTAAAACATCATACTCAAATCTTAACCAGTACTAGTAGTATTGTTTAGAAAATCCTAGACAGCTGACCTCCTAATTTGCTAGCCAATTAATTAGGAGCATGTTTTGATTCAGTGTATGCATGGACACCTTCTTGCTGGGCATCTAGATTAAGGTAATACTCTATTTAGTAGAAGTACTAGTAGTACATTTTTCTGGCGTGACTGCTATGCTCATCAACAGGGAGTAAATTGAAGTAGTCTGAGAGACAAACAGTCAGGGAGGTAGTACAGTTTCAGGTCTTGATGGATGTTCCGTTCCTAACTGTATGCTGGCATGGTTCTCACTGCAACCAACTTCCAAACATGAAGAACGTTTTCAAAAATTGAAAATGAGTTCATTTTTCTTCAGACACGAGTTGTTCTTTTCCCCCCGTTCGTTGTGTGCAGTAAAAGCTGCCGGCAAGTCACTCTACATCATCTGTTCAATATTCTTTTTTTTAGATAATTCTGTTAAATATTCTCATCTTATTATACTAGTATCCCCCAATGGCATCCTAATTTCTGTTCACATAATGCCTGAGGTGTCCTCATATCACTACACAAGTTGACATCTACAAGAAACATCTTACAATACAATTTTCTTACCAGTAGCATTTGCAGTACAAACTACAGTAATTAATTACTACAGAATTTTGCATCTCATCACCATGTCTGTCAACCTGCAGGAACTGAAGATATCATCATCAGATTAATTGTTGTCACCTTTCCAGCAAGAGCTCACCGTGGGGAGCTGCTACAAGTTTATTGCGATGACTGCCCGTGTTCTTTTAGCTGGGTCATCGTTCTGCTATGCTGTTTTTTGGCCATCATGAACACCCTGCCGCTGCTGCTACCTGCCATTGCCATCACTCAGACAATCTTGTGAATTTCCTTCTTTTTCCTAGATGAAGCTGCTGTACAAATTTTTGTGGGAGACGTGAGTTTCGAACAAGAATAAGCGTGTCCCGTAGCCAGCGTTAAACCTTTCCCTTCCAGAAATATTTTTCGAGTGAATTGAAATTCATATGTGCCTCTGGTTATTGGAGTGGCATTATTGTGTTCTCTCTGTCTCGCGGTTTGCGCTATAAAGTTGAGATAAATCTGATC
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| CDS seq | ATGGAGGCGGCGGTGGGGGACGGGGAAGGCGGTGGCGGCGGCGGCGGGCGGGGGAAGCGTGGGCGGGGAGGAGGAGGAGGGGAGATGGTGGAGGCGGTGTGGGGGCAGACGGGGAGTACGGCGTCGCGGATCTACAGGGTGAGGGCGACGGGGGGGAAGGACAGGCACAGCAAGGTGTACACGGCGAAGGGAATCCGCGACCGCCGCGTCCGCCTCTCCGTCGCCACCGCCATCCAGTTCTACGACCTCCAGGACCGCCTCGGCTTCGACCAGCCGAGCAAGGCCATCGAGTGGCTCATCAACGCCGCCTCCCCCGCCATCGACACCCTCCCGTCCCTCGACCCCGCCGCCTTCGCCGCCATTCCCCACGCCGCCGCCGACGCCGCGCCCACGCGGCGGCGTTCGCAGCAGCAGCAGCAGCAGCTCAGCAACAAGTCCGGATGCAGTAGCACGTCGGAGACCAGCAAGGGGTCGGACAAGGAGGTCACCGTGGCGAGCGCCCCGGCGCAGGCCGCGTCGTTCACTGAGCTGCTCATTGCTGGGGTGGCGGCGTCGTCGGCGGGGGGTGGCGCCATTGGCAACGGCGCCGACTGCGTGGGCATCGCGCACCCCGGGAAAGGAGGCGCGGAGGGGGCGTCCACGTACGGCTTCTCCGCCGCCTCGAGCTTCGGCGACGCGCCACCGATCGGCATGGTGCCGGCGCCGCCGTTCAACTTCTCCGCCCCCGGCGCCGACATGGCGGCGCACTACTCGCTCGCCCAGGACCAGCTGGCGGCGCCTCCGCCTCCTGCCGGAGGCGACTACAACCTCAACTTCTCCATGTCCTCGGGTTTCTTGGGTGCCAATAGGGGGACCCTTCAGTCCAATTCGCCGTCGAACATGTCCGGCCACCACCACCACCACCATCAGCAGCAGCTCCAGAGGCTGGACGGCTCCACCATTTCCTTCCTGCTTGGCCACGCCGCCGCGGCGGCGCACCCGGCGGCGTCCGAGGGCCAGATCACCAGCACCGCCGCGTTGCAGCTGTGGGATGGATTCCGCCACTCCGGCATGAAGGAGAAGAGCAAGAACTGA
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| Protein seq | MEAAVGDGEGGGGGGGRGKRGRGGGGGEMVEAVWGQTGSTASRIYRVRATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTLPSLDPAAFAAIPHAAADAAPTRRRSQQQQQQLSNKSGCSSTSETSKGSDKEVTVASAPAQAASFTELLIAGVAASSAGGGAIGNGADCVGIAHPGKGGAEGASTYGFSAASSFGDAPPIGMVPAPPFNFSAPGADMAAHYSLAQDQLAAPPPPAGGDYNLNFSMSSGFLGANRGTLQSNSPSNMSGHHHHHHQQQLQRLDGSTISFLLGHAAAAAHPAASEGQITSTAALQLWDGFRHSGMKEKSKN |
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| Function | Transcription factor PCF6 [UniProtKB/Swiss-Prot:Q10CE8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g57190 | LOC_Os03g57190.1 | Chr03 | 32614060 | 32618299 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGGCGGCGGTGGGGGACGGGGAAGGCGGTGGCGGCGGCGGCGGGCGGGGGAAGCGTGGGCGGGGAGGAGGAGGAGGGGAGATGGTGGAGGCGGTGTGGGGGCAGACGGGGAGTACGGCGTCGCGGATCTACAGGGTGAGGGCGACGGGGGGGAAGGACAGGCACAGCAAGGTGTACACGGCGAAGGGAATCCGCGACCGCCGCGTCCGCCTCTCCGTCGCCACCGCCATCCAGTTCTACGACCTCCAGGACCGCCTCGGCTTCGACCAGCCGAGCAAGGCCATCGAGTGGCTCATCAACGCCGCCTCCCCCGCCATCGACACCCTCCCGTCCCTCGACCCCGCCGCCTTCGCCGCCATTCCCCACGCCGCCGCCGACGCCGCGCCCACGCGGCGGCGTTCGCAGCAGCAGCAGCAGCAGCTCAGCAACAAGTCCGGATGCAGTAGCACGTCGGAGACCAGCAAGGGGTCGGACAAGGAGGTCACCGTGGCGAGCGCCCCGGCGCAGGCCGCGTCGTTCACTGAGCTGCTCATTGCTGGGGTGGCGGCGTCGTCGGCGGGGGGTGGCGCCATTGGCAACGGCGCCGACTGCGTGGGCATCGCGCACCCCGGGAAAGGAGGCGCGGAGGGGGCGTCCACGTACGGCTTCTCCGCCGCCTCGAGCTTCGGCGACGCGCCACCGATCGGCATGGTGCCGGCGCCGCCGTTCAACTTCTCCGCCCCCGGCGCCGACATGGCGGCGCACTACTCGCTCGCCCAGGACCAGCTGGCGGCGCCTCCGCCTCCTGCCGGAGGCGACTACAACCTCAACTTCTCCATGTCCTCGGGTTTCTTGGGTGCCAATAGGGGGACCCTTCAGTCCAATTCGCCGTCGAACATGTCCGGCCACCACCACCACCACCATCAGCAGCAGCTCCAGAGGCTGGACGGCTCCACCATTTCCTTCCTGCTTGGCCACGCCGCCGCGGCGGCGCACCCGGCGGCGTCCGAGGGCCAGATCACCAGCACCGCCGCGTTGCAGCTGTGGGATGGATTCCGCCACTCCGGCATGAAGGAGAAGAGCAAGAACTGA
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| Protein seq | MEAAVGDGEGGGGGGGRGKRGRGGGGGEMVEAVWGQTGSTASRIYRVRATGGKDRHSKVYTAKGIRDRRVRLSVATAIQFYDLQDRLGFDQPSKAIEWLINAASPAIDTLPSLDPAAFAAIPHAAADAAPTRRRSQQQQQQLSNKSGCSSTSETSKGSDKEVTVASAPAQAASFTELLIAGVAASSAGGGAIGNGADCVGIAHPGKGGAEGASTYGFSAASSFGDAPPIGMVPAPPFNFSAPGADMAAHYSLAQDQLAAPPPPAGGDYNLNFSMSSGFLGANRGTLQSNSPSNMSGHHHHHHQQQLQRLDGSTISFLLGHAAAAAHPAASEGQITSTAALQLWDGFRHSGMKEKSKN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.088908 | 0.000000 | 0.288690 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0785800 | RBH | 0.131472 | 0.000000 | 1.121476 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g05720 | RBH | 0.503667 | 0.619479 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0785800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0037310 | RBH | 0.0 | 0.0 | 0.342075 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0037000 | RBH | 0.0 | 1.586484 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0037060 | RBH | 0.227155 | 0.0 | 1.466314 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0037360 | RBH | 0.000000 | 0.063316 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0036850 | RBH | 0.0 | 0.0 | 1.447350 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0556900 | RBH | 2.2103725 | 1.057565 | 0.9303205 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0036650 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0557800 | RBH | 1.625794 | 0.5019205 | 8.069345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0037140 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0037150 | RBH | 0.046096 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0036790 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0036880 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0036840 | RBH | 0.063579 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G036650 | RBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0036440 | RBH | 0.0 | 0.0 | 0.637106 |
