Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g55990 | OGI:03089280 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:31869147-31871521 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACGCAACATCTCTCTGCCCAATCCTCCTCCCGGCCAATCCGCCATCCCCATCCCCGGCCAATCCATGCGGCCTCCTCCTCCCGGCCGGGGGCAAGGACGGCGCCGGCGTTTACAAAGACGACGGAGCAAGGGGACGACAACATTGCCGCCCTCCACCATGCCTCCTGTGCTGCCCTCCTCTACCATGATGGCCTCCTCGACCTTGTGGTTGCGTCCACGGGGGGAGGGAGGAGGCGGCACCCGCCCGAGCTGCCGCCGGTGCTCCCCTCCTCCTTCTCCATCCACTTGTGGTGACGGCGGCGGCGGGTGGAGGGACGCCCGCTGAATCCGCCACCGGTTCTCCTTCCCTCCTTGTTCTCCCTCCACTTAGGCCGGCGGCGGCGGTGGTGGCGGGGGGAGGGCAGATCCGGCGCCCGACGCCGGCGGATCCGCCGTCGTGCCCCCTCCCTTCCCTTGTGGCGGCAGTGGCGAGGGTACCTACGTTGGCGGCAGAGCCGGCTGCGCGTCTGCCGCCGATGCCCTTCCCTCATGGCGGCGTCGGACCGGCCGCCTGCGCAGGACTGCCGTACGTCTTCCCCCGTCGCCGCGTTGCCTCTCCGTCCTCTCCTCCGCAGCTTCCCAACCGTTCCCCTCTCAACTCTCGACCTCTCCTCTCTACGTGGAACACCATGACCGTCGCCGCCGAGGTCGACGCATCCCCTGACGGAGAGGAGAGGAGGAAGCAAGCTTGCAATCGCACAACCATCTATCGATTTCTCCCTTCCTTCTCTTTCTTCTTTCTTTCTTTCGTTTCCCCCTCTCACATGTCAGGTTATTTTTTCTCCTCATCCTCTCCGGATGATTTCACTTTTGCTCGAAATCTCTCAGGTTGTTGTTGTGTTGAAGGTGGCGAAGGGGGAAACTTTGGTGGTGGTGGTGGCCGGAGTGGAGGATGGCGGCAGCGGTGGCGATGCCCGATGCGGAGCGGCAGCGGCAGTGACGGCAGCGGGTACGACAAGGCCGGGATGGACTCCGGCAAGTACGTGCACTACACGCCGGGTCAGGTGGAGGCGCTGGAGCGGGTGTACGCCGAGTGCCCCAAGCCCAGATTCTCTCGCCGCCAGCAGTTACTCTGCGAGTTATCCATCCTCGCCAACATCGAGCCCAAGCAGAAGATCAAGGTCTGGTTCCCAAAACAGAAGGTGAGCAAAAGCATGCAGGGATATACTATCAAACTGGTTTGCCTTTTGTGTGTCTGGCTGTGAAATGTTCTGGACAAATTGGTTGACAATGGAGCAATAGCAATAGTAGTGTTCAATTGTTTGCCTTGGTTGTGCATACTCTGCTTCAACTATATTTAGGAATTGCAAGTCTATGTATTTATTTGTTTTGCTTCCTTTCTTGCATAATGGAACAACCTTTATATAATCAAGGAAGAATACTGTACTTACCAGAGTATGTGCCAGATTAAGCCATCCATTAATTAGATGCTGAAGTAAACTATATGACTATATTGCGATGTATTCTAATTCCACTACTTACAAAACTGTAGGGTATAAGATTTGCTTATTTTTAGAAGATAGGCTAAACGAGGGTCATTTAGGTCACATGGCCAAACTAAGACACATATACATAACGTATTATCATGCATCTGATAGTAATGCAAAACAATGCAGTACTATTTACTTTCACTGCAGGTATTTAGGCTCTATCTTTTATTTTTCTCAAGAGGCACTTAACATGATATACAAAATTTGAAGAGTTACATTTTTTAAAAAACTTCTATGAGTTCTGCCTAAATGATTGTTATCCATGGTGTGCCTAAATAATTGTTCGATCTAGAGGTGATCCAAAGATTCGTCTATATTAGACGTAACAATAATGCAGTGTTTTTTTTGTTTATTTTTTAGCCTACAAATGTTTGACAAGAAGAGGATGAAAGAGTGACATAGGCGAGCTCTGTAGCATATATAGAATGTTTGCTATCCACTGGTACATCTTTAACCCGAGCCTACCTACTGTATAGATGTGTTTAGTACGTGCTTACTATGCTTAATTTTGGGGATAATATAGTACGACGTGTAAGAAAATTCAGAACTATGTTGTATGCTCTAGCTGAATTTGTTTACTTCCTACAAAAAAATGGATGAACTACTGATCCAGTTCATGTTGTGATCCTCCTCCAAGGAGTTTTTTTTTGTTTCTTTGCTATCTGAAAGATTCCTTTTTTTTTTTTGCTTTGTTGAAGTGGAAGGAGCTCATTGGTGTACCTTTGTTGAAATGGCTCCTTTGCATCCTCATTGTTTCACATGTCTGTTTCATTTCCGTTTTTAAGGGACTGGCCTTATTAAAGGTTGTTTAAAAGCTTGAACAAGACTTCTATTTGATTGATCTTT
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| CDS seq | ATGCCCTTCCCTCATGGCGGCGTCGGACCGGCCGCCTGCGCAGGACTGCCGTACGTCTTCCCCCGTCGCCGCGTTGCCTCTCCGTCCTCTCCTCCGCAGCTTCCCAACCGTTCCCCTCTCAACTCTCGACCTCTCCTCTCTACGTGGAACACCATGACCGTCGCCGCCGAGGTCGACGCATCCCCTGACGGAGAGGAGAGGAGGAAGCAAGCTTGCAATCGCACAACCATCTATCGATTTCTCCCTTCCTTCTCTTTCTTCTTTCTTTCTTTCGTTTCCCCCTCTCACATGTCAGGTTATTTTTTCTCCTCATCCTCTCCGGATGATTTCACTTTTGCTCGAAATCTCTCAGGTTGTTGTTGTGTTGAAGGTGGCGAAGGGGGAAACTTTGGTGGTGGTGGTGGCCGGAGTGGAGGATGGCGGCAGCGGTGGCGATGCCCGATGCGGAGCGGCAGCGGCAGTGACGGCAGCGGGTACGACAAGGCCGGGATGGACTCCGGCAAGTACGTGCACTACACGCCGGGTCAGGTGGAGGCGCTGGAGCGGGTGTACGCCGAGTGCCCCAAGCCCAGATTCTCTCGCCGCCAGCAGTTACTCTGCGAGTTATCCATCCTCGCCAACATCGAGCCCAAGCAGAAGATCAAGGTCTGGTTCCCAAAACAGAAGGTGAGCAAAAGCATGCAGGGATATACTATCAAACTGGTTTGCCTTTTGTGTGTCTGGCTGTGA
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| Protein seq | MPFPHGGVGPAACAGLPYVFPRRRVASPSSPPQLPNRSPLNSRPLLSTWNTMTVAAEVDASPDGEERRKQACNRTTIYRFLPSFSFFFLSFVSPSHMSGYFFSSSSPDDFTFARNLSGCCCVEGGEGGNFGGGGGRSGGWRQRWRCPMRSGSGSDGSGYDKAGMDSGKYVHYTPGQVEALERVYAECPKPRFSRRQQLLCELSILANIEPKQKIKVWFPKQKVSKSMQGYTIKLVCLLCVWL |
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| Function | Homeobox-leucine zipper protein HOX10 [UniProtKB/Swiss-Prot:Q6TAQ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g55990 | LOC_Os03g55990.1 | Chr03 | 31869147 | 31871497 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCCTTCCCTCATGGCGGCGTCGGACCGGCCGCCTGCGCAGGACTGCCGTACGTCTTCCCCCGTCGCCGCGTTGCCTCTCCGTCCTCTCCTCCGCAGCTTCCCAACCGTTCCCCTCTCAACTCTCGACCTCTCCTCTCTACGTGGAACACCATGACCGTCGCCGCCGAGGTCGACGCATCCCCTGACGGAGAGGAGAGGAGGAAGCAAGCTTGCAATCGCACAACCATCTATCGATTTCTCCCTTCCTTCTCTTTCTTCTTTCTTTCTTTCGTTTCCCCCTCTCACATGTCAGGTTATTTTTTCTCCTCATCCTCTCCGGATGATTTCACTTTTGCTCGAAATCTCTCAGGTTGTTGTTGTGTTGAAGGTGGCGAAGGGGGAAACTTTGGTGGTGGTGGTGGCCGGAGTGGAGGATGGCGGCAGCGGTGGCGATGCCCGATGCGGAGCGGCAGCGGCAGTGACGGCAGCGGGTACGACAAGGCCGGGATGGACTCCGGCAAGTACGTGCACTACACGCCGGGTCAGGTGGAGGCGCTGGAGCGGGTGTACGCCGAGTGCCCCAAGCCCAGATTCTCTCGCCGCCAGCAGTTACTCTGCGAGTTATCCATCCTCGCCAACATCGAGCCCAAGCAGAAGATCAAGGTCTGGTTCCCAAAACAGAAGGTGAGCAAAAGCATGCAGGGATATACTATCAAACTGGTTTGCCTTTTGTGTGTCTGGCTGTGA
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| Protein seq | MPFPHGGVGPAACAGLPYVFPRRRVASPSSPPQLPNRSPLNSRPLLSTWNTMTVAAEVDASPDGEERRKQACNRTTIYRFLPSFSFFFLSFVSPSHMSGYFFSSSSPDDFTFARNLSGCCCVEGGEGGNFGGGGGRSGGWRQRWRCPMRSGSGSDGSGYDKAGMDSGKYVHYTPGQVEALERVYAECPKPRFSRRQQLLCELSILANIEPKQKIKVWFPKQKVSKSMQGYTIKLVCLLCVWL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g55990 | LOC_Os03g55990.2 | Chr03 | 31869147 | 31871521 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCCTTCCCTCATGGCGGCGTCGGACCGGCCGCCTGCGCAGGACTGCCGTACGTCTTCCCCCGTCGCCGCGTTGCCTCTCCGTCCTCTCCTCCGCAGCTTCCCAACCGTTCCCCTCTCAACTCTCGACCTCTCCTCTCTACGTGGAACACCATGACCGTCGCCGCCGAGGTCGACGCATCCCCTGACGGAGAGGAGAGGAGGAAGCAAGCTTGCAATCGCACAACCATCTATCGATTTCTCCCTTCCTTCTCTTTCTTCTTTCTTTCTTTCGTTTCCCCCTCTCACATGTCAGGTTATTTTTTCTCCTCATCCTCTCCGGATGATTTCACTTTTGCTCGAAATCTCTCAGGTTGTTGTTGTGTTGAAGGTGGCGAAGGGGGAAACTTTGGTGGTGGTGGTGGCCGGAGTGGAGGATGGCGGCAGCGGTGGCGATGCCCGATGCGGAGCGGCAGCGGCAGTGACGGCAGCGGGTACGACAAGGCCGGGATGGACTCCGGCAAGTACGTGCACTACACGCCGGGTCAGGTGGAGGCGCTGGAGCGGGTGTACGCCGAGTGCCCCAAGCCCAGATTCTCTCGCCGCCAGCAGTTACTCTGCGAGTTATCCATCCTCGCCAACATCGAGCCCAAGCAGAAGATCAAGGTCTGGTTCCCAAAACAGAAGCCTACAAATGTTTGA
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| Protein seq | MPFPHGGVGPAACAGLPYVFPRRRVASPSSPPQLPNRSPLNSRPLLSTWNTMTVAAEVDASPDGEERRKQACNRTTIYRFLPSFSFFFLSFVSPSHMSGYFFSSSSPDDFTFARNLSGCCCVEGGEGGNFGGGGGRSGGWRQRWRCPMRSGSGSDGSGYDKAGMDSGKYVHYTPGQVEALERVYAECPKPRFSRRQQLLCELSILANIEPKQKIKVWFPKQKPTNV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g55990 | LOC_Os03g55990.3 | Chr03 | 31869147 | 31870557 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCCTTCCCTCATGGCGGCGTCGGACCGGCCGCCTGCGCAGGACTGCCGTACGTCTTCCCCCGTCGCCGCGTTGCCTCTCCGTCCTCTCCTCCGCAGCTTCCCAACCGTTCCCCTCTCAACTCTCGACCTCTCCTCTCTACGTGGAACACCATGACCGTCGCCGCCGAGGTCGACGCATCCCCTGACGGAGAGGAGAGGAGGAAGCAAGCTTGCAATCGCACAACCATCTATCGATTTCTCCCTTCCTTCTCTTTCTTCTTTCTTTCTTTCGTTTCCCCCTCTCACATGTCAGGTGGCGAAGGGGGAAACTTTGGTGGTGGTGGTGGCCGGAGTGGAGGATGGCGGCAGCGGTGGCGATGCCCGATGCGGAGCGGCAGCGGCAGTGACGGCAGCGGGTACGACAAGGCCGGGATGGACTCCGGCAAGTACGTGCACTACACGCCGGGTCAGGTGGAGGCGCTGGAGCGGGTGTACGCCGAGTGCCCCAAGCCCAGATTCTCTCGCCGCCAGCAGTTACTCTGCGAGTTATCCATCCTCGCCAACATCGAGCCCAAGCAGAAGATCAAGGTCTGGTTCCCAAAACAGAAGGTGAGCAAAAGCATGCAGGGATATACTATCAAACTGGTTTGCCTTTTGTGTGTCTGGCTGTGA
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| Protein seq | MPFPHGGVGPAACAGLPYVFPRRRVASPSSPPQLPNRSPLNSRPLLSTWNTMTVAAEVDASPDGEERRKQACNRTTIYRFLPSFSFFFLSFVSPSHMSGGEGGNFGGGGGRSGGWRQRWRCPMRSGSGSDGSGYDKAGMDSGKYVHYTPGQVEALERVYAECPKPRFSRRQQLLCELSILANIEPKQKIKVWFPKQKVSKSMQGYTIKLVCLLCVWL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.152445 | 0.160064 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0769800 | RBH | 0.000000 | 0.226521 | 0.584470 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0769800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0036190 | RBH | 0.521911 | 7.197226 | 4.195239 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0035860 | RBH | 0.0 | 2.972768 | 0.880478 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0035940 | RBH | 0.898585 | 1.672517 | 5.997029 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0036250 | RBH | 0.275959 | 0.233135 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0035740 | RBH | 2.564949 | 10.636371 | 5.926703 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0543700 | RBH | 6.7247215 | 19.441224 | 64.406122 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0035530 | RBH | 0.234857 | 0.239232 | 0.500300 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0544100 | RBH | 7.062569 | 33.6119955 | 20.401079 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0036010 | RBH | 0.0 | 0.087157 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0036030 | RBH | 0.415784 | 11.661037 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0035680 | RBH | 5.151320 | 21.835796 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0035750 | RBH | 0.253925 | 0.515898 | 0.469507 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0035720 | RBH | 0.434327 | 5.664879 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G035540 | RBH | 0.141809 | 4.964877 | 2.623754 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0035330 | RBH | 1.398823 | 2.198512 | 3.093489 |
