Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g55560 | OGI:03088650 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:31612405-31619547 | ||||||||
| Gene Symbol | MAPKKK18, OsMAPKKK18 | ||||||||||
| DNA seq | TTCAAAAATACAAAAGAGAACGTGCACATGTCGATCCCCTTTTGCCAACTCTTTATCATTATTACTGGGCCTCAAAAAATCAACAATGATTACATCGTGGTGTGGTTACACAATAGCAAAAACAACACAAGCTACAACTACAACCCTAGTGTCCTACCTGTTGGCAACAATCAGGGCCATTAGTTTAACCTACAGCTAACCCTAAATAATATCTTACAAAGGAAACGCCATCATTTCCTTGAAAACAAACATTACAGGTTTCAGAAGCTATTGCGATCGTACCGTGCTGATGTCCTTCGCATGCCAAGTACTTTACAAGACCCAGCGAATGTTCAATTATGATGACTGGCAGTACAGGGATCAGAAGTTAGAGATGGGCTCGCATCCAACAGATTGGGTGGATGGACAGATGATGTGTTTCCGCACCTTAGGTAGGCAGCTCGTCATGCTTCAAGGTGAACAAATTTATTGCTTCCTTTCCATTTGGCCTTGGCAATGGACTAGGCTGATGGTATGCGATAGAAAAGTGCATACTAGGTGTATGGGCCGCAGAGCCAGGACTGGACCTCAAACTCATCGGCGTAGGGGATAAGCTACGAGTTTCCAAATTTGGCAGGGCTGTCAAGCCTACTGCCACCCGATTAGATAATGAACCGGGAGATCTAGCACTGCTTGTTTCACTGGCAGGAAAAAGGAAAGAGATGGCAGGGTTAAGACTTGAGGGTCTCACATAATGCAACTTTCATAGACAAATTAAGCAATAACTCGCTAACAGAGAAAGGTCAACAAGTACTCACCCAGTTGTAATCATATTTTTCCCCCTCATGCATGAAACAATCTTACAGGACTTTTTGTCTCTTGCATTGTGACCGGTATCCTGCCATAACCAGAAAAGTTATACACATGCATGAAAATTGGTACTCAGTACAGCATTCCCGTGAGTGAGAAGCATTCTTACGGTGGATTTAAGTCCAGTGGGAGAATGTAAAGCACTGTGCTGGTTGAAGTTATTCGAATTGTGGACAAATGGATGCTCCAGCAACTTGCTTGCTGTTGGTCTCTCAGCTGGATTTCTTCTGAAGCAGCATCTCAGAAATTCCTTCCCCTCCGGGGATAAACTGTCTGGAATTGACGGATCTTTATGCAACACCTTAAACATTGCAGCAGGCTGTTGCATAGGGAAAATCAGATTTCATCCTAGTGAGAATACAAATACCATGATATAGAAATATATTACTTTTTTTAACGCTCATAATGATGATCGAGGCAAGGTAACAGATTTGACAGGTTATCATTATTCATTAGATAAAGCCAAGTAATGAAAGATGAGCTATACTAATTATACAAATTCACCTCGTGAAACACATTAATTTGCTAGCAAAAAGAAGGGAAGGTTCCAAACTGTTTACCCCTTCAAGACCACTCCAAGGAGGCTTTCCTGTGAACATCTCAATAATTGTGCAACCTAGGCTCCAGATATCCACAGCAAGATCATACCCTACATCTTTGACAAGTGTAGCCTGAACAACCTGCAATATAAGTTGTGCAAGTATGAGTACACCATACACTGATGCGATACATTTCTATTCGGAATAGCAAAAAAGATAAAAGAAACTGCTAATCTAAATAAATACCACTTTGCTGAAGACAGTAGTATGTCTGATGCTAAGGAGGGTGATTCTAAAGTATGAGATATTTTATACAACCATAAACATCAAGGTCCTTTGAGGACACAGGAATTTCATAGGATATTAATAGAAAACAGTTCATTTCGCACAGGAACTGGAGAAGACTCCCATGTTCCAAACCGAGTCTAAGATTTCGGAACCATTGGGAACATTACAAATCAGCTACTCCCTTCGGCTTTTAATGAACAACGCAGTTGACTTTTGGGCATACGTTTGATCATTTATCTTATTCAAAAAAATTAACGTAATTATCATTTATTTTGTCGTGATTTGTTTTATCATTAAAAGTACTTTAAGCATGACATCTATTTTTGCATATTGGCACAAAATTTTTGAATAAGACGAATGGCTAAACGCTTGTCGAAAAGTCAACCGCATCATACATCAAAAAACAGAGGGAGTTTTGACATAATAGTTGTAGTTTATGAAATCTAATAAAAAATACACCATGAAATTTATATGAAGAACAAGCAGTCTCACCTCAGGAGCCATCCAGTATGGAGTTCCCTTCAGTGAAAGATTAGGAGCTGCAGTACTCAACTGAAAAGAAGATAAAAAGGGAAAAATAATTAGAAACGCAGCAAGGTTAAACCTAAAAACTATAAAGTCCACTCACAGAATAACCATATACTCATCAACGGTTGCATCTGGAAAAGCACTCGTAAAAAATAGTAGGGAATACCAATACTGTTTCAAATGAGCCCCGTTTGGATCCCTATACGTTGTGCTGAATTGGAATCTAATTTCCAGTGTTTGAGGTGTTTGACTCCCTCTAGACTTCTAGACTTTGAATCCATGATCTCTTAAAATTCCAGAGGTCTAAGGTGTATAAGACACTTTTTTTTTTGTTAAAAACACAAATCAAATGGAATCCGAGCCAGCCGTGTCCCCGTTGCCTTCCCCAGGTGTAAACGTGTAAGGTCTCCAAGTCTGCTGTCTCTCCTCACCTCCTCAGCAGGCTGGCCCCTTCTCCACCATTACAACCTTCCCTTCCTCCACTACTTGTCCCTCTGCCTGGCTTCCAAGCTCTCCCTTGCTTTCATTCATCGTTGCCACCACCAGCACCATAGCCACAGAAAAGCCTGGGTCACTGTCAGCCTTTTCACTCCTTGTTTGACTCTCCCTCCGTCCTCGGCACTCTACCCTCTTGCCCCCAGCCACTGCTGCCAAGCACCATAAGGAGTATGAAGCACTCTATCAGATCGCCCCCAGCCACATCACGGCTTGAGATGAAGGGGATTGTGTCATGGTATCTGATGTTTTTTTTTTCTTTTGATTACTTTGATTTTGCATCCAATGCAATGCCTAGGTAGGATTCTGGCTATGATCCCAATCTCAACATCCAAACACTTTTTTCTGAGTTGATTCATTGTTATAATTCCACTCATCCAAACATAAATATTTGAATTGGAATCATATTCTAGCCAATTCAAAAATCTACTGGAATCCAAAATGGAGTCCAATTTTTTAAATTTGTGGGATCCAAACAGGACCTTAGTGTCACACCAAACTGTTTCCCTACAAATTAAAGCAGCTGAAAAAGAGAGTTTGTTTTACCAAGTATAGGTTTACATTTATGCATAACAGCTTATGCCCACATATAGTAATGGCATGGTAGTCATTGTGCTGGTTATAATTACATAGGCAAATAAATTGCTTGTTTCAGAGCTTAATCATTTTTTAACTGCACCACAAAATGGATGGACGTATTATTATTGTCTAGAAGGCAGCAATGACAAGATTAATTCAAACAAATCAAACTGGATTACCAACTACTGGATAATTGTAGCATAACACGATGCATCAAGACAACATGAGAAACTCACATGCTTAGCCATTCCAAAGTCAGCCAATTTGACTACACCATTCACATCAACAAGCAAATTTGCTCCTTTGATATCTCTGCAAGAGTATAATGATTTCATTTACATGTGTACTCTTTCAGCATCATGCAGTCCAAAGTTCAAACTAAATAACAAAGGAACTTGAGAAAAAAATATTTCTCGCAAAGTTGGGCCTAAAAAAGAGTGTGGGGAACACATGAGAAATGACAAAGGGCACAAATACACACACGAGTGGGATCTGAATCAGCTATAAGATGAATGTGGGTACAAATACAAAATAAGCTTGAGAAAACACAAAAACATAAACAAACAATAGAAACCAAAATGGCACAGAAATAGGATGAAGAAATCTCTACATGTAAAAAATAAAAGGAGACCATCTAAAAGAGCTGAACAAAAGGTAAGTTCAAGAAAACTTTCACATAGTGAGATGGCCATTATTAGTTAAACAAATGAAACAGAAAAAAGAGAAAAGGTTACCTATGCATAATCTTCTGACTATGTAAAAAGGCAAGGCCTTTAAGTATATGGCGGGTGAAGCTGCGGATTACTGATTCTGTCATTGCTCCACAATGTTGATTAACATATTTATTAATTGAACCAGGGTGAACATATTCCAGGTATATGTAGAATCGATCTTCAATCTGCAAAGTATCCAGATGATCATTGGATACATTAATAACTAGCGCATAATATCACCTCAATTTGGCACATGAGAACTTACATATTCACTGCCGTAGTACTGCACTATGTTTTCATGCTTGAATTGACTAAGAAATTTTATTTCCTGAAACAAAGTGAGATCCAGTCAAAAAGAGCAAGGGCAGAACTTACATAATCTTTAGATATAATTATAGAAGAGGAGAGTACTCAAGCAGAGTTACAATAACATTATACGACCAAGTTCAAAAAAGTGATATGCATGCTAGAAACTAATATGTACTTGAGGATAGTAATAATAATATTTAATCCTCAAAGTAAGAGAAAAGGTATTCTGTTGTGGGAAACAGACACATCAGAGAATAGTATTTGATAATACCATCACTGCAGAATAAACATCATCCATCATCTATGTTCTTACAAACTGATACTAATAACACAAGGCCAAACCTGCTCCAATTGCTTGAGAGACTCAGCTGATTTAGCATCATCGGGAATTATGTTGACCTCTTTCATGGCACACAGAGCTCCAGTGTGTCTGTACGTTAGATGCCAGATGAAATGTTCAAACTTTAAGATGATCCAGCAAACATAATGCTATATAAAATGCATTTGCATACCTATTGGCGGCCTCATATACACATCCAAATGTTCCACTGCCAATGAGCTTTCCTTTTTGCCACTGACCAGCCATTGAGGGTGCATCAACTTTTGGAACTGGCTGGTGACTAAAATTCGTCTGCTTTGGGCTTACAGAGGCGGGTGGGAGGGGTAATGGATGGAAATTTACACTCCCATTGCCCTCAGGACGAGAAACATGGTTCTCCGGGAACAACTTTGGATGCATTGGTGAAGGAGGTGCACTTGGGTTTTTTGATCTTAGAACAGGGCTTCTCAATGGACTGGAGCGAGGAGATCGCTCCTGACTACCCATAATTTTTTCAGGTGACGCACAACGAGGTGAAGATCCATATAGATCAGGAGACCAGACTGACTGTGCTGACGATAAATTGGCACCTTGGGTGGATGTTGCAGTGGACAAAAAGTCTACACTACTCAGTCTTCGAGGACTCTGTACAGGGCTTGAAAATCCACTGCTTGGAGCACTTTTAGCGGGTATGTTCAATCTGAATGTCAATGTTTCAGCTGAGCTCTTATCCTGTAATTTCTCTTTAAATGCCTTCCTCCGTTGTCCACAGTTAATCCCATTTGTGCCATTTGATCGCAAGTCACCATGCTCAGGGTTTTTTTGCACCGTTTTAGCCATCACTCTATATTCAGAAACATAAAATCATCAGAATCACTAGTAATACAGAACTGCACCACGTTTCCAGGGAACATGAAACGTTTTCTGAACATGGAATAATCTAATCAGTGTGTAATGGAGCTTACAGATAATTCAAAAGGAAGCATAGGGAAAGTTGAAAAGCATAGAGATGCACTATTGGAATGTTTTTTTTCATTATCTCCAGTATCAATGTAACATTGCTATTGGTATGAGATATGTGCACAATGTTTTTGTAACAATTCACAGGCTTGTTGAATCTTTATTTTTGCTTTATCTTAGCAACTTCATGTAAATCCAGTTCAACCAAATCAAGTTACACTGACTTTGTTATTGTCAAAATCCTAGTATCCTCCTACTAGCTATTAAGTTCATAGAAAAGCAAAATTAACTTAGTAAAGTGTTATCCAGCTGGACCCTATGAAGTACAGCAGAAGTCCTAAACCCTTTTAACTCTATTTAGTCAAAACCCTGTAACAGTGGCAAAGAATATCCTCCTTGGTCTCTGAATCCCTGGGCATTTTTATTTCACAATTTGCTTAAATTATTCTCATCCACAACAAAGATTCTGCCATCTTAAGTGTTCAAATGCCACTGCTACTGCGGCATGAATGAACAGTGTTATACCTTCTTAGATGGCTGGCAAAGCAGCAATCCCAATTTGGCTCAGAAATGCTAAATCAGTGCGAGCGGACATCATAGCTAACTAGCTAACAGCCTAACACACTATCCTTTTGATGATTCAATAGCAAGAACTAATTAACTTGGCAGAGTTCGTACTTGGTCAGCTACGCAAGGAAGAATCTAAAGTAATAACACTTGAAAAACTCTGAAGTAATAAACACTTGAAAATCATCACCTCGGAAACAACGATGCTCTGTCGCTCCCGATCTCGGAAACCCCGAGCAAGTTCGACTCCACGGCCGACCCGTTGCAGTCTCCTTCGAATAGCTTGGGCGACGGGAGGGATCTCCCGGAGCCGCGGCAGGGCGAGTCCCCCTCATCGGGCAGGGGCAGCGGGTGCGGCAGCAGCACGGGAGACGACGACGACCTCGGCGGCGCCACCTCCATGTTACTCGCGGTCCTCGAGATCGGCGTGGAGCTCGCGGTCAGGAGGCCGAACCCCACCGAATCCCTACTGGAGGGGCACGACGAGGGCGCGGCGGGCGAGGGGGAGGAATCCAGCCCGAGCGCCGAGACCCCGACCTCGATGTCGTCGACGTGCCGCAGCCGCCTCTGCCTGGTCAACCGCGGCTGCGGATCACTCCCCCCACCCCAACCAAACCCCACCACATCCCGGCGGCGGCTGGGGACACCGCCGCCAACGCGGGAGGTCGAGGCCCGCGCCGGGGACGCGGGCGTGGACGCGGACGCGGACGAAGAGGACGGGGACGGGGAAGGGGAGACCGAGCGCTTCCACCACCGCATCGGCGAAGGCGAGCGAATCCTTACCTGGAGGAGCAGCGCGAAACCCTAGTGATCACAGTGGCAATGGCGATGTGAGGGGTGGAGGCGGATGAGGAGAGGGGGATCGGAGACGAAGACGACGACGACGACCCCCGCCATTTGGGCGAATTTTTTTTTCCCTCTCCGCTTCTCGGGAGTCGGTTTTGCTGTTGATGTTTTTTTTTTCTTCCGCTCTTTCTTTCCCGGGGTTTGGTCTATC
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| CDS seq | ATGCGGTGGTGGAAGCGCTCGGTCTCCCCTTCCCCGTCCCCGTCCTCTTCGTCCGCGTCCGCGTCCACGCCCGCGTCCCCGGCGCGGGCCTCGACCTCCCGCGTTGGCGGCGGTGTCCCCAGCCGCCGCCGGGATGTGGTGGGGTTTGGTTGGGGTGGGGGGAGTGATCCGCAGCCGCGGTTGACCAGGCAGAGGCGGCTGCGGCACGTCGACGACATCGAGGTCGGGGTCTCGGCGCTCGGGCTGGATTCCTCCCCCTCGCCCGCCGCGCCCTCGTCGTGCCCCTCCAGTAGGGATTCGGTGGGGTTCGGCCTCCTGACCGCGAGCTCCACGCCGATCTCGAGGACCGCGAGTAACATGGAGGTGGCGCCGCCGAGGTCGTCGTCGTCTCCCGTGCTGCTGCCGCACCCGCTGCCCCTGCCCGATGAGGGGGACTCGCCCTGCCGCGGCTCCGGGAGATCCCTCCCGTCGCCCAAGCTATTCGAAGGAGACTGCAACGGGTCGGCCGTGGAGTCGAACTTGCTCGGGGTTTCCGAGATCGGGAGCGACAGAGCATCGTTGTTTCCGAGAGTGATGGCTAAAACGGTGCAAAAAAACCCTGAGCATGGTGACTTGCGATCAAATGGCACAAATGGGATTAACTGTGGACAACGGAGGAAGGCATTTAAAGAGAAATTACAGGATAAGAGCTCAGCTGAAACATTGACATTCAGATTGAACATACCCGCTAAAAGTGCTCCAAGCAGTGGATTTTCAAGCCCTGTACAGAGTCCTCGAAGACTGAGTAGTGTAGACTTTTTGTCCACTGCAACATCCACCCAAGGTGCCAATTTATCGTCAGCACAGTCAGTCTGGTCTCCTGATCTATATGGATCTTCACCTCGTTGTGCGTCACCTGAAAAAATTATGGGTAGTCAGGAGCGATCTCCTCGCTCCAGTCCATTGAGAAGCCCTGTTCTAAGATCAAAAAACCCAAGTGCACCTCCTTCACCAATGCATCCAAAGTTGTTCCCGGAGAACCATGTTTCTCGTCCTGAGGGCAATGGGAGTGTAAATTTCCATCCATTACCCCTCCCACCCGCCTCTGTAAGCCCAAAGCAGACGAATTTTAGTCACCAGCCAGTTCCAAAAGTTGATGCACCCTCAATGGCTGGTCAGTGGCAAAAAGGAAAGCTCATTGGCAGTGGAACATTTGGATGTGTATATGAGGCCGCCAATAGACACACTGGAGCTCTGTGTGCCATGAAAGAGGTCAACATAATTCCCGATGATGCTAAATCAGCTGAGTCTCTCAAGCAATTGGAGCAGGAAATAAAATTTCTTAGTCAATTCAAGCATGAAAACATAGTGCAGTACTACGGCAGTGAATATATTGAAGATCGATTCTACATATACCTGGAATATGTTCACCCTGGTTCAATTAATAAATATGTTAATCAACATTGTGGAGCAATGACAGAATCAGTAATCCGCAGCTTCACCCGCCATATACTTAAAGGCCTTGCCTTTTTACATAGTCAGAAGATTATGCATAGAGATATCAAAGGAGCAAATTTGCTTGTTGATGTGAATGGTGTAGTCAAATTGGCTGACTTTGGAATGGCTAAGCATTTGAGTACTGCAGCTCCTAATCTTTCACTGAAGGGAACTCCATACTGGATGGCTCCTGAGGTTGTTCAGGCTACACTTGTCAAAGATGTAGGGTATGATCTTGCTGTGGATATCTGGAGCCTAGGTTGCACAATTATTGAGATGTTCACAGGAAAGCCTCCTTGGAGTGGTCTTGAAGGGCCTGCTGCAATGTTTAAGGTGTTGCATAAAGATCCGTCAATTCCAGACAGTTTATCCCCGGAGGGGAAGGAATTTCTGAGATGCTGCTTCAGAAGAAATCCAGCTGAGAGACCAACAGCAAGCAAGTTGCTGGAGCATCCATTTGTCCACAATTCGAATAACTTCAACCAGCACAGTGCTTTACATTCTCCCACTGGACTTAAATCCACCGATACCGGTCACAATGCAAGAGACAAAAAGTCCTGTAAGATTGTTTCATGCATGAGGGGGAAAAATATGATTACAACTGGTGAAACAAGCAGTGCTAGATCTCCCGGTTCATTATCTAATCGGGTGGCAGTAGGCTTGACAGCCCTGCCAAATTTGGAAACTCGTAGCTTATCCCCTACGCCGATGAGTTTGAGGTCCAGTCCTGGCTCTGCGGCCCATACACCTAGTATGCACTTTTCTATCGCATACCATCAGCCTAGTCCATTGCCAAGGCCAAATGGAAAGGAAGCAATAAATTTGTTCACCTTGAAGCATGACGAGCTGCCTACCTAA
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| Protein seq | MRWWKRSVSPSPSPSSSSASASTPASPARASTSRVGGGVPSRRRDVVGFGWGGGSDPQPRLTRQRRLRHVDDIEVGVSALGLDSSPSPAAPSSCPSSRDSVGFGLLTASSTPISRTASNMEVAPPRSSSSPVLLPHPLPLPDEGDSPCRGSGRSLPSPKLFEGDCNGSAVESNLLGVSEIGSDRASLFPRVMAKTVQKNPEHGDLRSNGTNGINCGQRRKAFKEKLQDKSSAETLTFRLNIPAKSAPSSGFSSPVQSPRRLSSVDFLSTATSTQGANLSSAQSVWSPDLYGSSPRCASPEKIMGSQERSPRSSPLRSPVLRSKNPSAPPSPMHPKLFPENHVSRPEGNGSVNFHPLPLPPASVSPKQTNFSHQPVPKVDAPSMAGQWQKGKLIGSGTFGCVYEAANRHTGALCAMKEVNIIPDDAKSAESLKQLEQEIKFLSQFKHENIVQYYGSEYIEDRFYIYLEYVHPGSINKYVNQHCGAMTESVIRSFTRHILKGLAFLHSQKIMHRDIKGANLLVDVNGVVKLADFGMAKHLSTAAPNLSLKGTPYWMAPEVVQATLVKDVGYDLAVDIWSLGCTIIEMFTGKPPWSGLEGPAAMFKVLHKDPSIPDSLSPEGKEFLRCCFRRNPAERPTASKLLEHPFVHNSNNFNQHSALHSPTGLKSTDTGHNARDKKSCKIVSCMRGKNMITTGETSSARSPGSLSNRVAVGLTALPNLETRSLSPTPMSLRSSPGSAAHTPSMHFSIAYHQPSPLPRPNGKEAINLFTLKHDELPT |
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| Function | Mitogen-activated protein kinase kinase kinase 5 [UniProtKB/Swiss-Prot:Q9C5H5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g55560 | LOC_Os03g55560.1 | Chr03 | 31612405 | 31619547 | - | MSU_osa1r7 | ||
| CDS seq | ATGCGGTGGTGGAAGCGCTCGGTCTCCCCTTCCCCGTCCCCGTCCTCTTCGTCCGCGTCCGCGTCCACGCCCGCGTCCCCGGCGCGGGCCTCGACCTCCCGCGTTGGCGGCGGTGTCCCCAGCCGCCGCCGGGATGTGGTGGGGTTTGGTTGGGGTGGGGGGAGTGATCCGCAGCCGCGGTTGACCAGGCAGAGGCGGCTGCGGCACGTCGACGACATCGAGGTCGGGGTCTCGGCGCTCGGGCTGGATTCCTCCCCCTCGCCCGCCGCGCCCTCGTCGTGCCCCTCCAGTAGGGATTCGGTGGGGTTCGGCCTCCTGACCGCGAGCTCCACGCCGATCTCGAGGACCGCGAGTAACATGGAGGTGGCGCCGCCGAGGTCGTCGTCGTCTCCCGTGCTGCTGCCGCACCCGCTGCCCCTGCCCGATGAGGGGGACTCGCCCTGCCGCGGCTCCGGGAGATCCCTCCCGTCGCCCAAGCTATTCGAAGGAGACTGCAACGGGTCGGCCGTGGAGTCGAACTTGCTCGGGGTTTCCGAGATCGGGAGCGACAGAGCATCGTTGTTTCCGAGAGTGATGGCTAAAACGGTGCAAAAAAACCCTGAGCATGGTGACTTGCGATCAAATGGCACAAATGGGATTAACTGTGGACAACGGAGGAAGGCATTTAAAGAGAAATTACAGGATAAGAGCTCAGCTGAAACATTGACATTCAGATTGAACATACCCGCTAAAAGTGCTCCAAGCAGTGGATTTTCAAGCCCTGTACAGAGTCCTCGAAGACTGAGTAGTGTAGACTTTTTGTCCACTGCAACATCCACCCAAGGTGCCAATTTATCGTCAGCACAGTCAGTCTGGTCTCCTGATCTATATGGATCTTCACCTCGTTGTGCGTCACCTGAAAAAATTATGGGTAGTCAGGAGCGATCTCCTCGCTCCAGTCCATTGAGAAGCCCTGTTCTAAGATCAAAAAACCCAAGTGCACCTCCTTCACCAATGCATCCAAAGTTGTTCCCGGAGAACCATGTTTCTCGTCCTGAGGGCAATGGGAGTGTAAATTTCCATCCATTACCCCTCCCACCCGCCTCTGTAAGCCCAAAGCAGACGAATTTTAGTCACCAGCCAGTTCCAAAAGTTGATGCACCCTCAATGGCTGGTCAGTGGCAAAAAGGAAAGCTCATTGGCAGTGGAACATTTGGATGTGTATATGAGGCCGCCAATAGACACACTGGAGCTCTGTGTGCCATGAAAGAGGTCAACATAATTCCCGATGATGCTAAATCAGCTGAGTCTCTCAAGCAATTGGAGCAGGAAATAAAATTTCTTAGTCAATTCAAGCATGAAAACATAGTGCAGTACTACGGCAGTGAATATATTGAAGATCGATTCTACATATACCTGGAATATGTTCACCCTGGTTCAATTAATAAATATGTTAATCAACATTGTGGAGCAATGACAGAATCAGTAATCCGCAGCTTCACCCGCCATATACTTAAAGGCCTTGCCTTTTTACATAGTCAGAAGATTATGCATAGAGATATCAAAGGAGCAAATTTGCTTGTTGATGTGAATGGTGTAGTCAAATTGGCTGACTTTGGAATGGCTAAGCATTTGAGTACTGCAGCTCCTAATCTTTCACTGAAGGGAACTCCATACTGGATGGCTCCTGAGGTTGTTCAGGCTACACTTGTCAAAGATGTAGGGTATGATCTTGCTGTGGATATCTGGAGCCTAGGTTGCACAATTATTGAGATGTTCACAGGAAAGCCTCCTTGGAGTGGTCTTGAAGGGCCTGCTGCAATGTTTAAGGTGTTGCATAAAGATCCGTCAATTCCAGACAGTTTATCCCCGGAGGGGAAGGAATTTCTGAGATGCTGCTTCAGAAGAAATCCAGCTGAGAGACCAACAGCAAGCAAGTTGCTGGAGCATCCATTTGTCCACAATTCGAATAACTTCAACCAGCACAGTGCTTTACATTCTCCCACTGGACTTAAATCCACCGATACCGGTCACAATGCAAGAGACAAAAAGTCCTGTAAGATTGTTTCATGCATGAGGGGGAAAAATATGATTACAACTGGTGAAACAAGCAGTGCTAGATCTCCCGGTTCATTATCTAATCGGGTGGCAGTAGGCTTGACAGCCCTGCCAAATTTGGAAACTCGTAGCTTATCCCCTACGCCGATGAGTTTGAGGTCCAGTCCTGGCTCTGCGGCCCATACACCTAGTATGCACTTTTCTATCGCATACCATCAGCCTAGTCCATTGCCAAGGCCAAATGGAAAGGAAGCAATAAATTTGTTCACCTTGAAGCATGACGAGCTGCCTACCTAA
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| Protein seq | MRWWKRSVSPSPSPSSSSASASTPASPARASTSRVGGGVPSRRRDVVGFGWGGGSDPQPRLTRQRRLRHVDDIEVGVSALGLDSSPSPAAPSSCPSSRDSVGFGLLTASSTPISRTASNMEVAPPRSSSSPVLLPHPLPLPDEGDSPCRGSGRSLPSPKLFEGDCNGSAVESNLLGVSEIGSDRASLFPRVMAKTVQKNPEHGDLRSNGTNGINCGQRRKAFKEKLQDKSSAETLTFRLNIPAKSAPSSGFSSPVQSPRRLSSVDFLSTATSTQGANLSSAQSVWSPDLYGSSPRCASPEKIMGSQERSPRSSPLRSPVLRSKNPSAPPSPMHPKLFPENHVSRPEGNGSVNFHPLPLPPASVSPKQTNFSHQPVPKVDAPSMAGQWQKGKLIGSGTFGCVYEAANRHTGALCAMKEVNIIPDDAKSAESLKQLEQEIKFLSQFKHENIVQYYGSEYIEDRFYIYLEYVHPGSINKYVNQHCGAMTESVIRSFTRHILKGLAFLHSQKIMHRDIKGANLLVDVNGVVKLADFGMAKHLSTAAPNLSLKGTPYWMAPEVVQATLVKDVGYDLAVDIWSLGCTIIEMFTGKPPWSGLEGPAAMFKVLHKDPSIPDSLSPEGKEFLRCCFRRNPAERPTASKLLEHPFVHNSNNFNQHSALHSPTGLKSTDTGHNARDKKSCKIVSCMRGKNMITTGETSSARSPGSLSNRVAVGLTALPNLETRSLSPTPMSLRSSPGSAAHTPSMHFSIAYHQPSPLPRPNGKEAINLFTLKHDELPT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g55560 | LOC_Os03g55560.2 | Chr03 | 31612405 | 31619547 | - | MSU_osa1r7 | ||
| CDS seq | ATGCGGTGGTGGAAGCGCTCGGTCTCCCCTTCCCCGTCCCCGTCCTCTTCGTCCGCGTCCGCGTCCACGCCCGCGTCCCCGGCGCGGGCCTCGACCTCCCGCGTTGGCGGCGGTGTCCCCAGCCGCCGCCGGGATGTGGTGGGGTTTGGTTGGGGTGGGGGGAGTGATCCGCAGCCGCGGTTGACCAGGCAGAGGCGGCTGCGGCACGTCGACGACATCGAGGTCGGGGTCTCGGCGCTCGGGCTGGATTCCTCCCCCTCGCCCGCCGCGCCCTCGTCGTGCCCCTCCAGTAGGGATTCGGTGGGGTTCGGCCTCCTGACCGCGAGCTCCACGCCGATCTCGAGGACCGCGAGTAACATGGAGGTGGCGCCGCCGAGGTCGTCGTCGTCTCCCGTGCTGCTGCCGCACCCGCTGCCCCTGCCCGATGAGGGGGACTCGCCCTGCCGCGGCTCCGGGAGATCCCTCCCGTCGCCCAAGCTATTCGAAGGAGACTGCAACGGGTCGGCCGTGGAGTCGAACTTGCTCGGGGTTTCCGAGATCGGGAGCGACAGAGCATCGTTGTTTCCGAGAGTGATGGCTAAAACGGTGCAAAAAAACCCTGAGCATGGTGACTTGCGATCAAATGGCACAAATGGGATTAACTGTGGACAACGGAGGAAGGCATTTAAAGAGAAATTACAGGATAAGAGCTCAGCTGAAACATTGACATTCAGATTGAACATACCCGCTAAAAGTGCTCCAAGCAGTGGATTTTCAAGCCCTGTACAGAGTCCTCGAAGACTGAGTAGTGTAGACTTTTTGTCCACTGCAACATCCACCCAAGGTGCCAATTTATCGTCAGCACAGTCAGTCTGGTCTCCTGATCTATATGGATCTTCACCTCGTTGTGCGTCACCTGAAAAAATTATGGGTAGTCAGGAGCGATCTCCTCGCTCCAGTCCATTGAGAAGCCCTGTTCTAAGATCAAAAAACCCAAGTGCACCTCCTTCACCAATGCATCCAAAGTTGTTCCCGGAGAACCATGTTTCTCGTCCTGAGGGCAATGGGAGTGTAAATTTCCATCCATTACCCCTCCCACCCGCCTCTGTAAGCCCAAAGCAGACGAATTTTAGTCACCAGCCAGTTCCAAAAGTTGATGCACCCTCAATGGCTGGTCAGTGGCAAAAAGGAAAGCTCATTGGCAGTGGAACATTTGGATGTGTATATGAGGCCGCCAATAGACACACTGGAGCTCTGTGTGCCATGAAAGAGGTCAACATAATTCCCGATGATGCTAAATCAGCTGAGTCTCTCAAGCAATTGGAGCAGGAAATAAAATTTCTTAGTCAATTCAAGCATGAAAACATAGTGCAGTACTACGGCAGTGAATATATTGAAGATCGATTCTACATATACCTGGAATATGTTCACCCTGGTTCAATTAATAAATATGTTAATCAACATTGTGGAGCAATGACAGAATCAGTAATCCGCAGCTTCACCCGCCATATACTTAAAGGCCTTGCCTTTTTACATAGTCAGAAGATTATGCATAGAGATATCAAAGGAGCAAATTTGCTTGTTGATGTGAATGGTGTAGTCAAATTGGCTGACTTTGGAATGGCTAAGCATTTGAGTACTGCAGCTCCTAATCTTTCACTGAAGGGAACTCCATACTGGATGGCTCCTGAGGTTGTTCAGGCTACACTTGTCAAAGATGTAGGGTATGATCTTGCTGTGGATATCTGGAGCCTAGGTTGCACAATTATTGAGATGTTCACAGGAAAGCCTCCTTGGAGTGGTCTTGAAGGGCCTGCTGCAATGTTTAAGGTGTTGCATAAAGATCCGTCAATTCCAGACAGTTTATCCCCGGAGGGGAAGGAATTTCTGAGATGCTGCTTCAGAAGAAATCCAGCTGAGAGACCAACAGCAAGCAAGTTGCTGGAGCATCCATTTGTCCACAATTCGAATAACTTCAACCAGCACAGTGCTTTACATTCTCCCACTGGACTTAAATCCACCGATACCGGTCACAATGCAAGAGACAAAAAGTCCTGTAAGATTGTTTCATGCATGAGGGGGAAAAATATGATTACAACTGGTGAAACAAGCAGTGCTAGATCTCCCGGTTCATTATCTAATCGGGTGGCAGTAGGCTTGACAGCCCTGCCAAATTTGGAAACTCGTAGCTTATCCCCTACGCCGATGAGTTTGAGGTCCAGTCCTGGCTCTGCGGCCCATACACCTAGTATGCACTTTTCTATCGCATACCATCAGCCTAGTCCATTGCCAAGGCCAAATGGAAAGGAAGCAATAAATTTGTTCACCTTGAAGCATGACGAGCTGCCTACCTAA
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| Protein seq | MRWWKRSVSPSPSPSSSSASASTPASPARASTSRVGGGVPSRRRDVVGFGWGGGSDPQPRLTRQRRLRHVDDIEVGVSALGLDSSPSPAAPSSCPSSRDSVGFGLLTASSTPISRTASNMEVAPPRSSSSPVLLPHPLPLPDEGDSPCRGSGRSLPSPKLFEGDCNGSAVESNLLGVSEIGSDRASLFPRVMAKTVQKNPEHGDLRSNGTNGINCGQRRKAFKEKLQDKSSAETLTFRLNIPAKSAPSSGFSSPVQSPRRLSSVDFLSTATSTQGANLSSAQSVWSPDLYGSSPRCASPEKIMGSQERSPRSSPLRSPVLRSKNPSAPPSPMHPKLFPENHVSRPEGNGSVNFHPLPLPPASVSPKQTNFSHQPVPKVDAPSMAGQWQKGKLIGSGTFGCVYEAANRHTGALCAMKEVNIIPDDAKSAESLKQLEQEIKFLSQFKHENIVQYYGSEYIEDRFYIYLEYVHPGSINKYVNQHCGAMTESVIRSFTRHILKGLAFLHSQKIMHRDIKGANLLVDVNGVVKLADFGMAKHLSTAAPNLSLKGTPYWMAPEVVQATLVKDVGYDLAVDIWSLGCTIIEMFTGKPPWSGLEGPAAMFKVLHKDPSIPDSLSPEGKEFLRCCFRRNPAERPTASKLLEHPFVHNSNNFNQHSALHSPTGLKSTDTGHNARDKKSCKIVSCMRGKNMITTGETSSARSPGSLSNRVAVGLTALPNLETRSLSPTPMSLRSSPGSAAHTPSMHFSIAYHQPSPLPRPNGKEAINLFTLKHDELPT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.482774 | 2.366879 | 0.765745 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0764300 | RBH | 2.219553 | 3.616111 | 3.033360 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g02350 | SBH | 4.440914 | 4.826646 | 3.528938 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0764300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0035790 | RBH | 0.936202 | 9.284272 | 7.252061 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0035460 | RBH | 0.552892 | 2.559285 | 2.837762 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0035550 | RBH | 1.513177 | 11.843328 | 11.489351 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0035850 | RBH | 0.276154 | 0.255734 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0035370 | RBH | 5.911406 | 8.536099 | 19.467316 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0539900 | RBH | 7.692191 | 31.135474 | 14.654833 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0035160 | RBH | 0.282872 | 1.015924 | 1.369967 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0539800 | RBH | 8.0799105 | 31.9961825 | 17.39602 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0035640 | RBH | 0.149975 | 0.037468 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0035660 | RBH | 0.534010 | 8.374578 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0035320 | RBH | 5.510780 | 22.935751 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0035380 | RBH | 1.213367 | 1.645508 | 1.841092 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0035340 | RBH | 0.351665 | 4.444593 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G035160 | RBH | 0.700000 | 2.048912 | 2.913332 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0034970 | RBH | 1.908019 | 27.891220 | 8.233377 |
