Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g55410 | OGI:03088410 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:31526726-31528307 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACTTATGCATGCCAAGAGGTTTAACAAGATGGCTCGGCCGTCGTCGTCGTGGTGGATGGCGCTGCTCGTCGTCGCCGCCGTGGCGCAGCTCGGCGCGTCCGACCTGAGGACGGACTACTACAACAGCACGTGCCCCAACGTCGAGAGCATCGTGCTCGGCGTGGTGAAGGACAAGATGCAGGCCACCATCCGCACCATCGGCTCCACCGTCCGCCTCTTCTTCCACGACTGCTTCGTCGATGTACAAACACTTTGCTTGATTGATTAATCGGCGATGTGTCAAGCATGGCGATCTCGATTGACTGACGTCGTGTGTGCGGCGTGGCGTGGCGTGGCGTGCAGGGGTGTGACGGCTCGGTGCTGATCACGTCGACGGCGGGCAACACGGCGGAGAGGGACGCGCCCGACAACCTCTCGCTGGCGTTCGAGGGATTCGAGACGGTGAGGAGCGCCAAGGCCGCCGTCGAGGCCGCGTGCCCCGACCAGGTCTCCTGCACCGACGTGCTCGCCATCGCCACGCGCGACGCCATCGCCCTGGTACGCTACGCGCTACACCAACTCGCACACGCTCTAGAAGTAACCGGTGATGCCAAACACTGCAAGATTCGTGCAGAGCGGTGGGCCATTCTTCCCGGTGGAGCTGGGCAGGCTGGACGGCATGAGGTCCAGCGCCAGCAACGTCGCCGGCAAGCTGCCGCAGCCGAACAACACCCTCAGCGAGCTCGTCGCCATCTTCAAATCCAACGGCCTCAACATGTCTGACATGGTCGCGCTCTCAGGTGCGACATAGACACACACTATACTATACAAACCAATGCATCCCCCGCCATGTGTTCGACGCAATGACTGACCGGACTCGGTGTACGCATGCAGCGGCGCACAGCGTCGGGCTGGCGCACTGCAGCAAGTTCTCGGACCGGCTGTACCGCTACAACCCGCCGTCGCAGCCGACGGACCCGACGCTGAACGAGAAGTACGCGGCGTTCCTCAAGGGCAAGTGCCCCGACGGCGGGCCGGACATGATGGTGCTCATGGACCAGGCCACGCCGGCGCTCTTCGACAACCAGTACTACCGGAACCTGCAGGACGGCGGCGGCTTGCTCGCCTCCGACGAGCTGCTCTACACCGACAACCGCACGCGGCCGACGGTGGACTCGCTGGCGGCCAGCACGCCGGACTTCTACAAGGCCTTCGCCGACGCCATCGTCAAGCTCGGCCGCGTCGGGGTCAAGTCCGGCGGCAAGGGCAACATCCGGAAGCAGTGTGACGTCTTCAACTGAGAAAAATGGCACTACGACGGCGACGACTACGGACCATTTGTAGATTGTGTATACACGATCGATTGAAAATGTGTGTGTTGACACGTATATAAATTGCAAAGGAGTGATTCGTTGGGTTTGCCAGTTTTCTGTTTGTACATCGATCGATCGGTCTTGTTCAATTCGTTGTGTTAAAATATGTGTGTTTCTGCACATAATTTGGATTCAATGAAGTAATAAGTGAATAAATACTACACTATCAACAAAAGACAGATTTTGATGTGTGATGACAGGATTAATCTAGAACAGTTGCTTGGATGGAA
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| CDS seq | ATGCATGCCAAGAGGTTTAACAAGATGGCTCGGCCGTCGTCGTCGTGGTGGATGGCGCTGCTCGTCGTCGCCGCCGTGGCGCAGCTCGGCGCGTCCGACCTGAGGACGGACTACTACAACAGCACGTGCCCCAACGTCGAGAGCATCGTGCTCGGCGTGGTGAAGGACAAGATGCAGGCCACCATCCGCACCATCGGCTCCACCGTCCGCCTCTTCTTCCACGACTGCTTCGTCGATGGGTGTGACGGCTCGGTGCTGATCACGTCGACGGCGGGCAACACGGCGGAGAGGGACGCGCCCGACAACCTCTCGCTGGCGTTCGAGGGATTCGAGACGGTGAGGAGCGCCAAGGCCGCCGTCGAGGCCGCGTGCCCCGACCAGGTCTCCTGCACCGACGTGCTCGCCATCGCCACGCGCGACGCCATCGCCCTGAGCGGTGGGCCATTCTTCCCGGTGGAGCTGGGCAGGCTGGACGGCATGAGGTCCAGCGCCAGCAACGTCGCCGGCAAGCTGCCGCAGCCGAACAACACCCTCAGCGAGCTCGTCGCCATCTTCAAATCCAACGGCCTCAACATGTCTGACATGGTCGCGCTCTCAGCGGCGCACAGCGTCGGGCTGGCGCACTGCAGCAAGTTCTCGGACCGGCTGTACCGCTACAACCCGCCGTCGCAGCCGACGGACCCGACGCTGAACGAGAAGTACGCGGCGTTCCTCAAGGGCAAGTGCCCCGACGGCGGGCCGGACATGATGGTGCTCATGGACCAGGCCACGCCGGCGCTCTTCGACAACCAGTACTACCGGAACCTGCAGGACGGCGGCGGCTTGCTCGCCTCCGACGAGCTGCTCTACACCGACAACCGCACGCGGCCGACGGTGGACTCGCTGGCGGCCAGCACGCCGGACTTCTACAAGGCCTTCGCCGACGCCATCGTCAAGCTCGGCCGCGTCGGGGTCAAGTCCGGCGGCAAGGGCAACATCCGGAAGCAGTGTGACGTCTTCAACTGA
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| Protein seq | MHAKRFNKMARPSSSWWMALLVVAAVAQLGASDLRTDYYNSTCPNVESIVLGVVKDKMQATIRTIGSTVRLFFHDCFVDGCDGSVLITSTAGNTAERDAPDNLSLAFEGFETVRSAKAAVEAACPDQVSCTDVLAIATRDAIALSGGPFFPVELGRLDGMRSSASNVAGKLPQPNNTLSELVAIFKSNGLNMSDMVALSAAHSVGLAHCSKFSDRLYRYNPPSQPTDPTLNEKYAAFLKGKCPDGGPDMMVLMDQATPALFDNQYYRNLQDGGGLLASDELLYTDNRTRPTVDSLAASTPDFYKAFADAIVKLGRVGVKSGGKGNIRKQCDVFN |
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| Function | Peroxidase 51 [UniProtKB/Swiss-Prot:Q9SZE7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g55410 | LOC_Os03g55410.1 | Chr03 | 31526726 | 31528307 | + | MSU_osa1r7 | ||
| CDS seq | ATGCATGCCAAGAGGTTTAACAAGATGGCTCGGCCGTCGTCGTCGTGGTGGATGGCGCTGCTCGTCGTCGCCGCCGTGGCGCAGCTCGGCGCGTCCGACCTGAGGACGGACTACTACAACAGCACGTGCCCCAACGTCGAGAGCATCGTGCTCGGCGTGGTGAAGGACAAGATGCAGGCCACCATCCGCACCATCGGCTCCACCGTCCGCCTCTTCTTCCACGACTGCTTCGTCGATGGGTGTGACGGCTCGGTGCTGATCACGTCGACGGCGGGCAACACGGCGGAGAGGGACGCGCCCGACAACCTCTCGCTGGCGTTCGAGGGATTCGAGACGGTGAGGAGCGCCAAGGCCGCCGTCGAGGCCGCGTGCCCCGACCAGGTCTCCTGCACCGACGTGCTCGCCATCGCCACGCGCGACGCCATCGCCCTGAGCGGTGGGCCATTCTTCCCGGTGGAGCTGGGCAGGCTGGACGGCATGAGGTCCAGCGCCAGCAACGTCGCCGGCAAGCTGCCGCAGCCGAACAACACCCTCAGCGAGCTCGTCGCCATCTTCAAATCCAACGGCCTCAACATGTCTGACATGGTCGCGCTCTCAGCGGCGCACAGCGTCGGGCTGGCGCACTGCAGCAAGTTCTCGGACCGGCTGTACCGCTACAACCCGCCGTCGCAGCCGACGGACCCGACGCTGAACGAGAAGTACGCGGCGTTCCTCAAGGGCAAGTGCCCCGACGGCGGGCCGGACATGATGGTGCTCATGGACCAGGCCACGCCGGCGCTCTTCGACAACCAGTACTACCGGAACCTGCAGGACGGCGGCGGCTTGCTCGCCTCCGACGAGCTGCTCTACACCGACAACCGCACGCGGCCGACGGTGGACTCGCTGGCGGCCAGCACGCCGGACTTCTACAAGGCCTTCGCCGACGCCATCGTCAAGCTCGGCCGCGTCGGGGTCAAGTCCGGCGGCAAGGGCAACATCCGGAAGCAGTGTGACGTCTTCAACTGA
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| Protein seq | MHAKRFNKMARPSSSWWMALLVVAAVAQLGASDLRTDYYNSTCPNVESIVLGVVKDKMQATIRTIGSTVRLFFHDCFVDGCDGSVLITSTAGNTAERDAPDNLSLAFEGFETVRSAKAAVEAACPDQVSCTDVLAIATRDAIALSGGPFFPVELGRLDGMRSSASNVAGKLPQPNNTLSELVAIFKSNGLNMSDMVALSAAHSVGLAHCSKFSDRLYRYNPPSQPTDPTLNEKYAAFLKGKCPDGGPDMMVLMDQATPALFDNQYYRNLQDGGGLLASDELLYTDNRTRPTVDSLAASTPDFYKAFADAIVKLGRVGVKSGGKGNIRKQCDVFN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.314424 | 0.256901 | 0.117168 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0762300 | RBH | 0.182470 | 0.405795 | 0.483564 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g02440 | SBH | 0.0 | 0.0 | 0.272942 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0762300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0035690 | RBH | 1.550120 | 72.715683 | 0.846572 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0035360 | RBH | 0.224983 | 13.742433 | 0.149366 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0035450 | RBH | 4.050352 | 20.482693 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0035750 | RBH | 0.841474 | 0.333082 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0035270 | RBH | 5.573881 | 26.636864 | 0.901610 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0538500 | RBH | 13.398605 | 31.0648155 | 1.662532 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0035060 | RBH | 0.519380 | 1.572171 | 0.182046 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0538400 | RBH | 6.4684705 | 5.0939145 | 0.29276 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0035540 | RBH | 0.057549 | 0.493509 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0035560 | RBH | 1.739909 | 39.929649 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0035220 | RBH | 10.197819 | 18.078861 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0035290 | RBH | 1.080685 | 1.242926 | 0.170905 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0035240 | RBH | 0.0 | 9.486119 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G035060 | RBH | 0.426997 | 0.0 | 0.282184 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0034880 | RBH | 5.033733 | 9.343742 | 0.617741 |
