Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g50450 | OGI:03080800 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:28795423-28799255 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGACGAATATGGCCAGAGTTTGTTATGGATGCTGATGCAACGAAGGCACGGAGCTAGGGAAACACTGCTATAGATCGTGGTTTGATGAGATGTAGCCCAAGCCAAAAACGGCACGACCCATTTGGATCACTCAACCAGTACGTTTCCTGTACATATTTTTCCTTTGGACCACCCTACGTACAGGGTAACAGTGGCATCTATTTATGGACCATGATCAATAATGATAGCCCAACAGTCACATTTCTATTCGTATCAGGCAGATTGAATTCAAAGGACGAAACCAACAAACAGGGGCGATTCAAAAAACATCTCGCCGAAAACAAGACCCGTGCCACCGGATCGAGAGCACGTTGCTTTCACGAACCGAAGGCGTCAACCAGATGCGGCCACAGGAGATGCATGTTTTACAGATCACCAAACCATCCAAAGAAAGACCCAGCAATCAATCACATCGGCCATGCCAATCGGCAACAACTCCATCAGGGAGCGAACTCATGAAATATGATTCTCAGGCAAGAAATTCCAAGCACTAGATTGCGGTGTAATTACATGGATAGCTAAAGAACCAACCTAATCATCAGCTAGAATAAGCAGATCGATTAAAGCAATCACAAACTTGGGGTGGTGATCCCTAAACACCACCAGAATACCTACCACAGCACAGAGGGTGCCAAGCATCATGCGCAATCGAAAGACAACCATATGGTTGACACCAATGGTAAATTCAATATTGCCAAAAGATGAAAGTAGTCCACTCAATTGAAGATAGGATTCATCAAATCCATGAACCAAATGTGGGCTACAGCAGTTAGCCGATTCCTCCATCATGTTATTCAATATCAAGGGGCAAAAGGATTGAGCCCCTCAGCGGATTCTGGCTTAGAAGTCTGATCATCGCCCGCTTCGAGATTTGAGGCCTGCTGCTGCGGATCTCTACCTTCTAATCTTTCGCTTGACTTTTTGATCTCCTCGATCCGCAAAACAACATGTGGCATTGAAGGTCGGGCATCTGGGACTTGTGCAACGCAGTCTATAGCAAGCTGTAGTAGCTGAACCATCTGTTCCTCAACATTCTGATACCTCAGGAGCTCCATATCAAACACCTCTGCAGTCCATTCCGAGCGGACAACTGACTGCACCCACCTGGGCAGGTCAACACCCTCATCGTTAAGAGCGGCCTGACTGGGGGCCTTGCCTGTGAGCAGCTCAAGCAAGAGAACACCAAAGCTGTACACATCTGCCTTCTGGGACACCCTCCGGGGATCAGTAACCTCAGGAGCACGGTATCCACTGGCACGGGATGGTGCGGACGATGGACCAACAAGAGCAGAAAGTCCGTTGTCTGATAAACGTGCTTGATACGACTTGTTCAGGAGGACATTGGATGACTTGATGTTGCCATGGGATGCTGATGAGCTTGTTGAGTGAATGTACTCGACGCCACGGGCTGCAGCCAGCGCAATGCTTGATCTCGTCTCCCAGTTAAGCGGTGTACGGCCAGAACCTCTGTTCCCTGCTTAGCAAATAAGTAAAGATGGTGTGAGATAAGTTTTCTATCCTCAAGTCTAAGTACCAGTATCATGATTAGCAGGAGTCACAACAGTAATGATGAAAACATTAGTATTCAACTATATGGCTATAACTTAAAATGCAAATATTAGTTCCAGCATGATATCAAGACATCAGATACCATCCTAATTAATCATGTACCATCCCCAGAAACTATAAGCAATGTAAAGAAAAATCACACTAACCAAGCTGAGTCAACACATTGAAGGAATTTGTGCATATAAAAAAAATAAGACAACCAATTCTGCACCTCAAGGATTGCAATGTCATCAATTATGTTTGAACTTTCTGAAAAGTATGAACAATTGAAAAGTTTAACCAGAACAGGGGGGAATCAAGAAACAGTCACAAACTAAATCGTAGTCAATCCTGAATGAGTAACATCAATTAAGAATCACTACCCAATAAACAACAGGTACTTTGGATACCAACATGATAAAGAAAACCTACATCAACACCGAGCCTGACTAAGTCTCCTAGAGAAGACAGAATCGGAGTAGAGTCTAAAACCGGCAGATGAATAGTCAAACGAGGAAAGGAAAAAGTAATAGCCACAAAACAATCAAGCGCCACTCTTATCATCACCACCAAATAACAATGCATCATAGTACTAACAAACACAAGAATAACATTTCATTGTGAATTAAGAATCACAACAAAATACAACTGTCAAGTTCTCACCATGCAAAACCGCAGAGAGGCTGCCCATGGGCATGAAGTCGTAGACGAGCAGCTTCTCGTCTTTGCTGTAGTAATAGGCACGAAGGGGAACGATGAACTCGTGCTGCAGCTCGCCAATGTCAGCAATCCGGTCACGGAACTCCGGCTCGGTCAGGGTCACATCCTTGAGCCTCTTCACTGCCACCGTCGCCCCGGATTCAAGAACAGCTTTGTACGTCGTCCCGAATGCGCCTTTCCCAAGCACCTCGGCGGATGCACGCAGCAGGTCCTCCAGGTCGAAGGGCGCCACTGCGGCCGCAGACCCGAAGAAGATCAGCTTCTTCCCTGAAGTCGACTGACCGAGAGGGGCGTGAGGATTGCCCACGGTGGCCATGGGTGCTACGGCCGCGGCGCTGGTCATCTCAGGTGGTTTACGGCCGGCGGCGACAACGGCAGGAGCCGAAGACGGAGGCGGCGGCATCTCCATAGACCGCGTCTTGGTGCGTCCCGACCTGCAGCAGAGGCAAATAAGGAGGAACAGGAGAAGCGCGGCTCCCACGGCGGAGCCTATGGCGATTCCTGCAATGGCGCCACCAGAGAGCTTCTTGCTCTTCTTGCCACTTTCACCCCCATTTCCGCCCTTGTCGCCGTTGTTCGCCGGAGTCGGCGACACCGGCTGTTCGCCCGGAGCCGGGGAAGGCGAGACCTCACCGGGACAAGGCCCCAAGGGGCCCCCGCACAACCCCGTCCCCAGGAACGCCGAGCGCGGCATGGTGCGGAGCGTGGCCGGGATGGATCCGTTCAGCTGGTTGAACGACACGTTGAACTGCTGCAGCGGCTGCTTGAGGTCGGGAATCTCGCCGGAGAAGCGGTTGTTCTCGAGGAGGAGAACCTTGAGCCGCGTGAGGTTGCCCAGCGCGGGTGGGATGGAGCCCGACAGGTCGTTCCCGCCGATGGCGAGGCGGACGAGGCCCTGGAGCGCGAGGAACGCCCGCGGGAACTCGCCGGAGAGCCTGTTCCCGTTGAGGAACACGTTGCGGAGCGCCGCGGCGGAGGTGAGGTCGCCCGGGAGCGCGCCGGCGAGCGCGTTGAGGCGGAGGCTGAGCGTGTGCAGCGCCGTCAGGTTCCCGAGCGTCCCCTCGGGCACCCGCCCCGCCAGCGCCGCCCCGGGGAGCCGCAGCACCGCCACCCTGCCGCCCTCGCAGGTCACCCCCGTCCACGAGCACGCTCCGCCCGGGTCGCTCCCGTTCCACGCCACGTGCCTCCCCACCGCGTCCCTGAACGCCAGCAGCGCCCTCGCGTCCCCCGCCAGGTCGTCCGCCATCGCCGCCGCCACCACCACGGACAGCACCACCATCGCCGCCAGCGCCACGCGGCGGCCGCTCGCCGGCCGCCACGCCGCCCGCATCCCGGCGGCGCGCAGAGGAGGAAGCGAGAGGAGGAGGGCGGCGCGTGCGCGCCTTTGTTTCGCTTTTGGTTGTGTGTGTGGGTGTGTGTGTGGGCGGTGGTGGATGGGGGAGAAGAGAGAGAGAGAGAGGTGGGCGAAACGGAAAAACCCTAAAAACTCCCGTGCGAATTTTGCGGAATGGGCCTCGGGGAGTTG
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| CDS seq | ATGCGGGCGGCGTGGCGGCCGGCGAGCGGCCGCCGCGTGGCGCTGGCGGCGATGGTGGTGCTGTCCGTGGTGGTGGCGGCGGCGATGGCGGACGACCTGGCGGGGGACGCGAGGGCGCTGCTGGCGTTCAGGGACGCGGTGGGGAGGCACGTGGCGTGGAACGGGAGCGACCCGGGCGGAGCGTGCTCGTGGACGGGGGTGACCTGCGAGGGCGGCAGGGTGGCGGTGCTGCGGCTCCCCGGGGCGGCGCTGGCGGGGCGGGTGCCCGAGGGGACGCTCGGGAACCTGACGGCGCTGCACACGCTCAGCCTCCGCCTCAACGCGCTCGCCGGCGCGCTCCCGGGCGACCTCACCTCCGCCGCGGCGCTCCGCAACGTGTTCCTCAACGGGAACAGGCTCTCCGGCGAGTTCCCGCGGGCGTTCCTCGCGCTCCAGGGCCTCGTCCGCCTCGCCATCGGCGGGAACGACCTGTCGGGCTCCATCCCACCCGCGCTGGGCAACCTCACGCGGCTCAAGGTTCTCCTCCTCGAGAACAACCGCTTCTCCGGCGAGATTCCCGACCTCAAGCAGCCGCTGCAGCAGTTCAACGTGTCGTTCAACCAGCTGAACGGATCCATCCCGGCCACGCTCCGCACCATGCCGCGCTCGGCGTTCCTGGGGACGGGGTTGTGCGGGGGCCCCTTGGGGCCTTGTCCCGGTGAGGTCTCGCCTTCCCCGGCTCCGGGCGAACAGCCGGTGTCGCCGACTCCGGCGAACAACGGCGACAAGGGCGGAAATGGGGGTGAAAGTGGCAAGAAGAGCAAGAAGCTCTCTGGTGGCGCCATTGCAGGAATCGCCATAGGCTCCGCCGTGGGAGCCGCGCTTCTCCTGTTCCTCCTTATTTGCCTCTGCTGCAGGTCGGGACGCACCAAGACGCGGTCTATGGAGATGCCGCCGCCTCCGTCTTCGGCTCCTGCCGTTGTCGCCGCCGGCCGTAAACCACCTGAGATGACCAGCGCCGCGGCCGTAGCACCCATGGCCACCGTGGGCAATCCTCACGCCCCTCTCGGTCAGTCGACTTCAGGGAAGAAGCTGATCTTCTTCGGGTCTGCGGCCGCAGTGGCGCCCTTCGACCTGGAGGACCTGCTGCGTGCATCCGCCGAGGTGCTTGGGAAAGGCGCATTCGGGACGACGTACAAAGCTGTTCTTGAATCCGGGGCGACGGTGGCAGTGAAGAGGCTCAAGGATGTGACCCTGACCGAGCCGGAGTTCCGTGACCGGATTGCTGACATTGGCGAGCTGCAGCACGAGTTCATCGTTCCCCTTCGTGCCTATTACTACAGCAAAGACGAGAAGCTGCTCGTCTACGACTTCATGCCCATGGGCAGCCTCTCTGCGGTTTTGCATGGGAACAGAGGTTCTGGCCGTACACCGCTTAACTGGGAGACGAGATCAAGCATTGCGCTGGCTGCAGCCCGTGGCGTCGAGTACATTCACTCAACAAGCTCATCAGCATCCCATGGCAACATCAAGTCATCCAATGTCCTCCTGAACAAGTCGTATCAAGCACGTTTATCAGACAACGGACTTTCTGCTCTTGTTGGTCCATCGTCCGCACCATCCCGTGCCAGTGGATACCGTGCTCCTGAGGTTACTGATCCCCGGAGGGTGTCCCAGAAGGCAGATGTGTACAGCTTTGGTGTTCTCTTGCTTGAGCTGCTCACAGGCAAGGCCCCCAGTCAGGCCGCTCTTAACGATGAGGGTGTTGACCTGCCCAGGTGGGTGCAGTCAGTTGTCCGCTCGGAATGGACTGCAGAGGTGTTTGATATGGAGCTCCTGAGGTATCAGAATGTTGAGGAACAGATGGTTCAGCTACTACAGCTTGCTATAGACTGCGTTGCACAAGTCCCAGATGCCCGACCTTCAATGCCACATGTTGTTTTGCGGATCGAGGAGATCAAAAAGTCAAGCGAAAGATTAGAAGGTAGAGATCCGCAGCAGCAGGCCTCAAATCTCGAAGCGGGCGATGATCAGACTTCTAAGCCAGAATCCGCTGAGGGGCTCAATCCTTTTGCCCCTTGA
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| Protein seq | MRAAWRPASGRRVALAAMVVLSVVVAAAMADDLAGDARALLAFRDAVGRHVAWNGSDPGGACSWTGVTCEGGRVAVLRLPGAALAGRVPEGTLGNLTALHTLSLRLNALAGALPGDLTSAAALRNVFLNGNRLSGEFPRAFLALQGLVRLAIGGNDLSGSIPPALGNLTRLKVLLLENNRFSGEIPDLKQPLQQFNVSFNQLNGSIPATLRTMPRSAFLGTGLCGGPLGPCPGEVSPSPAPGEQPVSPTPANNGDKGGNGGESGKKSKKLSGGAIAGIAIGSAVGAALLLFLLICLCCRSGRTKTRSMEMPPPPSSAPAVVAAGRKPPEMTSAAAVAPMATVGNPHAPLGQSTSGKKLIFFGSAAAVAPFDLEDLLRASAEVLGKGAFGTTYKAVLESGATVAVKRLKDVTLTEPEFRDRIADIGELQHEFIVPLRAYYYSKDEKLLVYDFMPMGSLSAVLHGNRGSGRTPLNWETRSSIALAAARGVEYIHSTSSSASHGNIKSSNVLLNKSYQARLSDNGLSALVGPSSAPSRASGYRAPEVTDPRRVSQKADVYSFGVLLLELLTGKAPSQAALNDEGVDLPRWVQSVVRSEWTAEVFDMELLRYQNVEEQMVQLLQLAIDCVAQVPDARPSMPHVVLRIEEIKKSSERLEGRDPQQQASNLEAGDDQTSKPESAEGLNPFAP |
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| Function | Probable inactive receptor kinase At1g48480 [UniProtKB/Swiss-Prot:Q9LP77] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g50450 | LOC_Os03g50450.1 | Chr03 | 28795423 | 28799255 | - | MSU_osa1r7 | ||
| CDS seq | ATGCGGGCGGCGTGGCGGCCGGCGAGCGGCCGCCGCGTGGCGCTGGCGGCGATGGTGGTGCTGTCCGTGGTGGTGGCGGCGGCGATGGCGGACGACCTGGCGGGGGACGCGAGGGCGCTGCTGGCGTTCAGGGACGCGGTGGGGAGGCACGTGGCGTGGAACGGGAGCGACCCGGGCGGAGCGTGCTCGTGGACGGGGGTGACCTGCGAGGGCGGCAGGGTGGCGGTGCTGCGGCTCCCCGGGGCGGCGCTGGCGGGGCGGGTGCCCGAGGGGACGCTCGGGAACCTGACGGCGCTGCACACGCTCAGCCTCCGCCTCAACGCGCTCGCCGGCGCGCTCCCGGGCGACCTCACCTCCGCCGCGGCGCTCCGCAACGTGTTCCTCAACGGGAACAGGCTCTCCGGCGAGTTCCCGCGGGCGTTCCTCGCGCTCCAGGGCCTCGTCCGCCTCGCCATCGGCGGGAACGACCTGTCGGGCTCCATCCCACCCGCGCTGGGCAACCTCACGCGGCTCAAGGTTCTCCTCCTCGAGAACAACCGCTTCTCCGGCGAGATTCCCGACCTCAAGCAGCCGCTGCAGCAGTTCAACGTGTCGTTCAACCAGCTGAACGGATCCATCCCGGCCACGCTCCGCACCATGCCGCGCTCGGCGTTCCTGGGGACGGGGTTGTGCGGGGGCCCCTTGGGGCCTTGTCCCGGTGAGGTCTCGCCTTCCCCGGCTCCGGGCGAACAGCCGGTGTCGCCGACTCCGGCGAACAACGGCGACAAGGGCGGAAATGGGGGTGAAAGTGGCAAGAAGAGCAAGAAGCTCTCTGGTGGCGCCATTGCAGGAATCGCCATAGGCTCCGCCGTGGGAGCCGCGCTTCTCCTGTTCCTCCTTATTTGCCTCTGCTGCAGGTCGGGACGCACCAAGACGCGGTCTATGGAGATGCCGCCGCCTCCGTCTTCGGCTCCTGCCGTTGTCGCCGCCGGCCGTAAACCACCTGAGATGACCAGCGCCGCGGCCGTAGCACCCATGGCCACCGTGGGCAATCCTCACGCCCCTCTCGGTCAGTCGACTTCAGGGAAGAAGCTGATCTTCTTCGGGTCTGCGGCCGCAGTGGCGCCCTTCGACCTGGAGGACCTGCTGCGTGCATCCGCCGAGGTGCTTGGGAAAGGCGCATTCGGGACGACGTACAAAGCTGTTCTTGAATCCGGGGCGACGGTGGCAGTGAAGAGGCTCAAGGATGTGACCCTGACCGAGCCGGAGTTCCGTGACCGGATTGCTGACATTGGCGAGCTGCAGCACGAGTTCATCGTTCCCCTTCGTGCCTATTACTACAGCAAAGACGAGAAGCTGCTCGTCTACGACTTCATGCCCATGGGCAGCCTCTCTGCGGTTTTGCATGGGAACAGAGGTTCTGGCCGTACACCGCTTAACTGGGAGACGAGATCAAGCATTGCGCTGGCTGCAGCCCGTGGCGTCGAGTACATTCACTCAACAAGCTCATCAGCATCCCATGGCAACATCAAGTCATCCAATGTCCTCCTGAACAAGTCGTATCAAGCACGTTTATCAGACAACGGACTTTCTGCTCTTGTTGGTCCATCGTCCGCACCATCCCGTGCCAGTGGATACCGTGCTCCTGAGGTTACTGATCCCCGGAGGGTGTCCCAGAAGGCAGATGTGTACAGCTTTGGTGTTCTCTTGCTTGAGCTGCTCACAGGCAAGGCCCCCAGTCAGGCCGCTCTTAACGATGAGGGTGTTGACCTGCCCAGGTGGGTGCAGTCAGTTGTCCGCTCGGAATGGACTGCAGAGGTGTTTGATATGGAGCTCCTGAGGTATCAGAATGTTGAGGAACAGATGGTTCAGCTACTACAGCTTGCTATAGACTGCGTTGCACAAGTCCCAGATGCCCGACCTTCAATGCCACATGTTGTTTTGCGGATCGAGGAGATCAAAAAGTCAAGCGAAAGATTAGAAGGTAGAGATCCGCAGCAGCAGGCCTCAAATCTCGAAGCGGGCGATGATCAGACTTCTAAGCCAGAATCCGCTGAGGGGCTCAATCCTTTTGCCCCTTGA
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| Protein seq | MRAAWRPASGRRVALAAMVVLSVVVAAAMADDLAGDARALLAFRDAVGRHVAWNGSDPGGACSWTGVTCEGGRVAVLRLPGAALAGRVPEGTLGNLTALHTLSLRLNALAGALPGDLTSAAALRNVFLNGNRLSGEFPRAFLALQGLVRLAIGGNDLSGSIPPALGNLTRLKVLLLENNRFSGEIPDLKQPLQQFNVSFNQLNGSIPATLRTMPRSAFLGTGLCGGPLGPCPGEVSPSPAPGEQPVSPTPANNGDKGGNGGESGKKSKKLSGGAIAGIAIGSAVGAALLLFLLICLCCRSGRTKTRSMEMPPPPSSAPAVVAAGRKPPEMTSAAAVAPMATVGNPHAPLGQSTSGKKLIFFGSAAAVAPFDLEDLLRASAEVLGKGAFGTTYKAVLESGATVAVKRLKDVTLTEPEFRDRIADIGELQHEFIVPLRAYYYSKDEKLLVYDFMPMGSLSAVLHGNRGSGRTPLNWETRSSIALAAARGVEYIHSTSSSASHGNIKSSNVLLNKSYQARLSDNGLSALVGPSSAPSRASGYRAPEVTDPRRVSQKADVYSFGVLLLELLTGKAPSQAALNDEGVDLPRWVQSVVRSEWTAEVFDMELLRYQNVEEQMVQLLQLAIDCVAQVPDARPSMPHVVLRIEEIKKSSERLEGRDPQQQASNLEAGDDQTSKPESAEGLNPFAP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.486660 | 0.325453 | 1.409742 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0712400 | RBH | 0.857071 | 0.867786 | 8.648502 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0712400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0032170 | RBH | 0.000000 | 7.660950 | 4.444784 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0031880 | RBH | 0.041764 | 3.474124 | 2.770891 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0031970 | RBH | 0.000000 | 3.074368 | 7.686148 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0032050 | RBH | 0.046368 | 0.267644 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0031770 | RBH | 1.554430 | 2.245187 | 12.743281 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0494700 | RBH | 10.0205505 | 6.965476 | 24.4622595 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0031440 | RBH | 0.094230 | 0.191423 | 1.148027 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0494600 | RBH | 12.7222605 | 6.221812 | 63.3571395 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0031840 | RBH | 0.053865 | 0.039502 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0031870 | RBH | 0.237115 | 2.929187 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0031840 | RBH | 0.0 | 6.147442 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0031620 | RBH | 0.119848 | 0.388048 | 1.266093 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0031640 | RBH | 0.115022 | 2.254011 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G031620 | RBH | 0.152910 | 1.154689 | 2.960743 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0031490 | RBH | 0.463204 | 4.005972 | 3.435852 |
