Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g47670 | OGI:03076650 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:27002204-27005965 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCTAGTCCAGGCTGGTGCTGATGTGAATTATGCTTATCCAAACACTCCCTTGGTGGTGTCCACGACAGCTGGCTTAACTGACTGTATCAAGTACTTGCTTGAGGTTCATGCAGATCCTAACATTCCAGATAAACAGGTGTGCTTTTGAGGCCCTGCTATTCTTTCTAAGTTGCTGTTCGTCTTAGTGCATGATCTAATACATGTGACTTTGAGTACTAAATTACTCTATAGGCTATTCTTTTTTTTTTCTATTCACGGGTATGTTAAGTATGTGCTCCTGACATGGTGTTCCATTCATACACTTGTGCATCTCTGTGTGCACTGGTGCACACCATGTATGATTCAATTTTAACCTGAATTACTTGTTGTAATCCAGTCAACTTTTTATCATTGGCTAGCCTTTCGAATTTAAGTCAATTAATACTTCAAATAAGTTAAGCATTTTTCTTTTTGAAAGTATTCTGGTGGGAAACCACCTCTGCAAGGTTCTTGCTTATTAAATAATCGTGCTCTCGATTCTTATATATGTTGATAAGTTTATCGTATAGGTTTATCTTCTTTCTTCTGTTACTTTGCAGAGCGGACTTACACCTATAGAAATTGCTGCAAGTGTTGGAAGAAGAGATCATGTGGAGATTCTATTTCCTTTCACTTCCCCTGTCAGAGCAGTAACAAACTGGACAGTTGAAGGAATTATTGCTCATGGGAAATCGAGACGCTTGATTCCCAAGGTTTGGCTTGAATTAGAAGTTCTTGGACCGTTCTATGCTTGTTCAGCTTGATGATTTGAACTATGTGTATATCTCTAATTTATCAAAAGTCATTCTTTTTCTCCTTTTCATTTTCATTTTCTTAGTTCCAAATTCTGAAGATAAAACGGTCACTTGATAGCTCTGGTCATGATCATTTGAATCCCCATTATTTGTGAGCTTTCATCATGCAGATTGTAGACTTGGATTCAAAGTTACAGTACCAAACATGAGCGTGTCCAGATACATAGCCAAAATCCCTTATATTTTGGGGCGGAAATCATATCTAATAAAAGTATTGCATGGTTTCCGCTTAAAAAAAGGATATGGTAACAGAACTGATACATATGATATAGTAAGAATCTGCCCCTTGTCTAAATAGGATAGTTGTGGCCTCTGCAAAGTTTTCTTTTCCTCTTGGAATTGTTTGTGTAGATGGATTAGACAATCCCTCCATATTGTTGTGTATATTTAAGCAGAGCAGTGTTCCCTGGTAATGAAAACATGCTCTGTAATCGTTGAGTGCCACCAATATCTTTTTAAATATTTTAGATTGGGCGTATGGGAGATGCATGTGTAGTTCCAACCCTCGCAAGCCTGTTGGATCTATTTGCACAAGCAAAAGGATTATTGGGGAGTTTTGTTCAATATACCTGTCTATCCAAACTAACCCCCACCTTGGTGTGCTTTTCAACTTTGTCTACGCTTGTGTTCCGTTCCCACGGGGATGCAACTTGCCAGCCAGTTGTTAGCACCTGGATAGCGCTCCATTTTTAGAACATTATCTATGAAAAGATGAAATGTTGCTCTTGCATTTTCAGCTTGCAGGTATTGACAAAATATGCTTATACTTTTATTTCAATTAATGACCTTAATTTGTTTTTCTGAAACAAAAGCCGTTTTTTATACATGTGTACTGTGAGCACTTATTTTCCATCTTTTTGTGAAGTTCTTAAACCATGTATGTTGCGTATTTTGTAGTTTGCGAGGCTTAATTTATGTTTATGGTTTAGGGTGAGTCATGTAGCAAGGTCAGTGACAGAAAGGCTGAGCTAAAATCACAGGGAGAAAAAGCCGTTAAGAGAAAGGACTACCTTGCTGCATCAAAGATCTACACTAAGGTATGCTTGCATCTTACTTGTTCCGTTATTTTGATGTTGTAGTGCTCTTGTGTGCATCACTGGTTCAATCTTCCTTGTGCTAGTGTGTAAGGAACAAAATAGTTTAACTTTTAAGAGAAGGGAAAATGTTCTGCCAAACTGTATTTTGTGCTTCTTATGTACTTTACTTTTATCTTCTTGGGAATGGCTCTAATTAGCTAAATCAGATGGCTATTTCCTATGTCTGATTATGTCATGGACACTGGACACTTTAAAGTTTTTCTGCGCCTAAGCAAATTGATCAGTTGACGGTTTGTGAGTACAAGTCTTAACCAAATTACGAACCAGTGTTGGATAAAATCTATGGCCTTCTAGATGTGTTGAAGTTGCTTTGTTAGAAAAAAGAATACATAGGAGGGACCATGCATCTTTGATTCTACGGAGTGGGGACTTCAACCCTCGTAGCCATTTTACAAATAACCTAAGAGAAAAGAAAAAGGAGAAACTAGACTGAAAGATTTGCATAAATAATATTTCTTTGTCTACGTGCTACTATGTTAGACAGCTAGTATATGGAAAGTTGGACACTACTAGCTACGGTAATTTTTGAATGGAAACTTCAGCTTAAAATGAACTATTGGTGGATGCATTCATCTGTAATAAAATTTCCCTTACTGTTTCACAAATTTGTTTTGCACATATTATGCAACTTTATCTTCAATTTGATGCAGGCGCTTGAGCTAGACTATTTTGATGCAACCCTGTATTCAAACAGAAGCCTTTGTTACCTACAAATTGGAAAAGCACAAAAGGCTTTGCTTGACGCAAAAAAATGTGTAAAACTGCGGCCTAAGTGGATGAAAGGTCACTACCGGGAAGGAGCTGCTTTGATGTTGCTAAAGGTCAGAAAAATTATTCCAGTGTGTTAATCACATGTTGCCCTTTACATCAGCTTGATGTCAAGCATCTGCCCAATTTTCTGCCCGCAGGAGCACAAGAAAGCATTCGAGGCATTCTTGAACGCGCTGAAACTGGATCCTGCTAATGCCGAGATTGAGAAAGTGATGTGGTAATGCTTCTGTCTATGATGTTTCGTACTACACCTATATATGGTTTTACCTGTGGAGTTTGGACGACAAATCACTTTCTTTTTTTTATGTAAGCAATGTGATTATACACGTATATACATATTTTGGCTGCTTGCACGTGCCAAGTTATTGATAAGCTTTGCTGCCCGGAATAGTTAGCCATAATCCATTGCATATAAATTGTAAATTATCCGGCCTACGTGTTACATTGGTATATGAGGCTTATTTGTTTGACATCAGGTTGTTCAGTGAATCAGGTAGTTGTTAGTATGAATATATCCTCAGAAATATGGATATTTAGAAAGTCTCGGTCTGCATCTAGCACCAAATACGTTGTAGCCCCTCTTTTGAGCTTCTTAACGTCATTTGGTTTAGAGTAAATTTCACGAGACTACATGCATTTTGACCAAACTACAGATTTAAGGTATTGTATCACAAAACTAAAGATTTAGCACTACATTTATCACAAAAGTACAGATTTAAGGCCAAGTATCATAAACTACATATTTAATGTTGAAGTTACCGTAAAACTATTGATTTAGTTTAAATAATTAGCACCATTGTTGGAGCTATAAACATTATAGTTTTATGACTAACTTGATTCCGGACCTGTAGTTTTATGATATTCTTTTGCTAAATATATAGTTTTGTGACACTCCATCTTAAATATATAGTTTTGGGATAAATTTGATGCCAAATCTATAGTTTTGTGATAATTTGGTGATAGTATATGTAGTTTTATGAAATTTATTCTTTGATTTACTTGCGCAGGGAGGCAGTTGAGGCGATGAAAAAGGATGATGCCGCTGAAGATAAAACTTAA
More
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| CDS seq | ATGCTAGTCCAGGCTGGTGCTGATGTGAATTATGCTTATCCAAACACTCCCTTGGTGGTGTCCACGACAGCTGGCTTAACTGACTGTATCAAGTACTTGCTTGAGGTTCATGCAGATCCTAACATTCCAGATAAACAGAGCGGACTTACACCTATAGAAATTGCTGCAAGTGTTGGAAGAAGAGATCATGTGGAGATTCTATTTCCTTTCACTTCCCCTGTCAGAGCAGTAACAAACTGGACAGTTGAAGGAATTATTGCTCATGGGAAATCGAGACGCTTGATTCCCAAGTTCCAAATTCTGAAGATAAAACGGTCACTTGATAGCTCTGGTCATGATCATTTGAATCCCCATTATTTTTTAGGGTGA |
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| Protein seq | MLVQAGADVNYAYPNTPLVVSTTAGLTDCIKYLLEVHADPNIPDKQSGLTPIEIAASVGRRDHVEILFPFTSPVRAVTNWTVEGIIAHGKSRRLIPKFQILKIKRSLDSSGHDHLNPHYFLG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g47670 | LOC_Os03g47670.1 | Chr03 | 27002204 | 27005965 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTAGTCCAGGCTGGTGCTGATGTGAATTATGCTTATCCAAACACTCCCTTGGTGGTGTCCACGACAGCTGGCTTAACTGACTGTATCAAGTACTTGCTTGAGGTTCATGCAGATCCTAACATTCCAGATAAACAGAGCGGACTTACACCTATAGAAATTGCTGCAAGTGTTGGAAGAAGAGATCATGTGGAGATTCTATTTCCTTTCACTTCCCCTGTCAGAGCAGTAACAAACTGGACAGTTGAAGGAATTATTGCTCATGGGAAATCGAGACGCTTGATTCCCAAGTTCCAAATTCTGAAGATAAAACGGTCACTTGATAGCTCTGGTCATGATCATTTGAATCCCCATTATTTTTTAGGGTGA
More
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| Protein seq | MLVQAGADVNYAYPNTPLVVSTTAGLTDCIKYLLEVHADPNIPDKQSGLTPIEIAASVGRRDHVEILFPFTSPVRAVTNWTVEGIIAHGKSRRLIPKFQILKIKRSLDSSGHDHLNPHYFLG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0680300 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0680300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0030090 | RBH | 0.0 | 0.0 | 0.399815 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0029780 | SBH | 0.0 | 0.0 | 2.492193 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0029840 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0029950 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0029670 | SBH | 1.664413 | 0.000000 | 26.191372 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0467600 | SBH | 0.055224 | 0.030247 | 0.7244175 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0029380 | SBH | 0.000000 | 0.0 | 0.917426 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0468700 | SBH | 0.012549 | 0 | 2.1404165 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0029700 | SBH | 0.039270 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0029770 | SBH | 0.122979 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0029720 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0029550 | SBH | 0.441650 | 0.0 | 1.953772 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0029510 | SBH | 0.177925 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G029520 | SBH | 0.0 | 0.0 | 0.453763 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0029460 | SBH | 0.0 | 0.0 | 0.0 |
