Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g43540 | OGI:03069760 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:24308939-24313541 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATTTAGCCCATTCCGGCCCAACAACACGCACACTGGGGGGACGTCTGCTGCGACGCCCACGGCCCATGTCCGCCTCCTGCTCTGATGCTTTCTGTATCGCGTCATCAGCCTTGTTGCCCCCTTCCATTTCTTCAGTTTCCTCAGGTTGTTCTTCAGACTTCCCTGGTGATGCTTGATTCATCCGCCGCCCCGGCCTGACATAGATAACATGCAAACTCACCCATATCCAACAGAAAAATTCCTGGTCAATCTTCGATGCATGCACCCATGCAAACTCCGATGGCTTCCTGCTCCTAGACGGCAACAGGATCAGCCACTACTCACTGCCAATCTCTCTACTCACTAAGGAGGTGTTTAGATTACACCATGTGTTTGAACACCTGTATAAAGTATTAAATATAGGCTAAAAAAATAAAAGAAAATTCGATCCATAGCACAGAAAATAACCCAATACCAAAAATAGCACAAGTTTTCACCTATTTTTCTTCGATCTGTAACACTTCCGTCCCAATTTGATTAAACGACGTTAGATTAGAGGAGATAAAATTATTGTCGGACTAATTTACTCTTCTTTTTGGGTGGCGCTGCCAGCGCCGTGCGTTCAAGGCAAAGGCCGCCGCCGTCGGCCGCGCACGCTACCCCAACGTCACCCATCTCTGCGCCTATTACCACGAGCCCGACGAGAAGCTTCTCCCCTACTATTGTCTTCGACGACAAGCTCTGGCTTCGGCCTCGCCTGTCTCGTCGCCGACGCTCACAAGAGTACAAGACGACTGACGCAGTCGAATAAGCTCAGCAGTGTGGCGCGCTCGCTGCGTAGCGAGGGCGAGGCTCTATCGGTGGCTCGGCGCTGGCGTACGTCGCATTGGAGTGGCCGTGGCGACTCAAAAGGGTGATGTGTTCGCGCTCGGGATCATGCTGCTGGAGGCGGTGACCGTGGCGCGGGTTGACGAGGAGAGGGGCAGTGTTGAGAGCTGGAGGTGTAGGCACGACACGTCTTCAAGGAGGAGCGGCTGTCGTCAGAGGTCGTCGACCTGACACTGCCCAGTGAGGTGCTCACCATGTTCCACTTCCATGCCGACCTCGATTGCACCAATCGAGCTCGACGCCGACCTGCGCCCCTGCAATGCGCGCCGTCGCCGAGAGCCTCGACTGGATTGGCTGCTAATCCGGCCATTTCTCCATCCGTTGAGCAATTCTTTCATCCTAATCGAGCTCAAACACTATAAGCTAGCTAAAGCTTTATCATTTGCAGTAACCACCATTAGCTTACAAGAACTTCAATCATGCTGATTTCTAGTCGCCAATGCATGGTAGAGATAGCAAAAAAAAGCAAAAATCCTAAGAATTATTCACTAATTTGTTCCGGTACTCAGTAATAGTGACAAATAGCTACAGTCTCCCCTCCATCAGCCACCGTCGTCAACCAAGCAGCCGTGACTCGCAGCCGCCGTCGTTGCCCTTTTCCGCAGCATGCGACACCTCGGAAACAACCACCGTCATTACCATTTCTTTTGGAGAACACCTTGCAAAAACGACCGAACTAACAAAAGGAGCAGGCACAATCTAACACTAACAGTCCCATATGCCACAGGGATAGAACCCGGGGCAAATTGGTATTTGCATGTGTCAACTCACGGCTAAACATTCGACCATAACTACTACCACGACGGAAGTGCTACGAATCGAGAAAAAAAGGATGTCCGATGCTTCTAGTCGAAAGCGGGAAATTTTTGTGCTATTTTTTGGTACCGGGTTGTTTTCTGTGCTATGTATCGAATTTTCTCAAAAAATAACTAATTGCGCAGATTGCGACTAATTTGCGAGATGAAGCTTTTAAGCCTAATTGTTCCATGATTTGACAATGTGGTGCTACAGTAAATATTTGCTAATGACAGATTAATTATGCTTAATAAATTCGTTTCACGGTTTACTGACGGATTCTGTAATTAGTTTTTTTATTAGTGCCCGAACACCCTATATAATATTCGATGTGACACGCCAAAATTTTACATCCTGGATCTAAACACCCCCTAAGCCATGCAGCACAACCACTAAGCTAGCACTTACACCATGCAACACACAACACACGTACACGTGACTTCTACTCAGATACTACCATATGACGCTACGAATAAACATGCTGAAATTAAAACAACAAGATTATATACTTCTAATAGCAAGAAGCCACGGAGAATCATCGTTGCCCCGTCCCATCCCTTCTGACGCCTTTGCTGCGGTTGATCACTCCCGTTTCCATCCCCTCCGCTCCAGTGGCGGAACTAGGATCTTCGGACGCGTAGGGCCCAAAATAAAGGCTAAAACTTGACAAATGTGCAGCAAAGTATAATACAGGTTGGACAAAAAAAATACAAGAGTGTTCGATTGGTGTGCGAAGCCCGGGATCAACAACAACCACATTTGGTTCAAGCACAATACGATCTTGCTCATTGTTACTAGCCATGGTTTCTGCTGAATTAGGCATTGGGATGGAGTCATTGGTTTCTTCTGTTTCTTGAGTTGCCGGGGTGGATTCATTTGAGGACTGAACTTGAATGAATAATTTTATTGTCCTACTTCTCTTCATCTAAGAATTCAAACCAAATCTAATAATGTGATGTACTAAAGCTAGGTTTGAGATTTGAGAAGTGAGAAAGGAAGAAGAAAGAGAACAAAAAATTGCTGACCTTTCACAGTTCCACTCCCACTGTCCCGCACGACCGCAAGCGGCAAGCCGACTAGCCGACGCGACGCCGCACGCCCGCACGCCATTCGCCGCCGCCGCTGCACGCCGCCTCGCCGGCCGCTGCCGCCGCCGCCTCGCGCCTCGCGCAGCCGCGCCCCCGCCGCCGCACGCCGCCTCGCGCCTTGCAGGGAGTGAGGAAGAGTTGGAGAGAGAGAGAGAGAGAGACCTAGGGCCTTCAGTGGCTAGGGTTTTCACTGCTTAGTGGGCTAATGGGCTTTGGCATTTTGCTATTTCGTGGGCCTTTTTTGGAAGGCCGAGTGTAGGGCCGGCCTGCATACGAGTGGGGCTGGGCTAAGAATGTATGGAAAAATTACAAGGTATAGGTACTAAAATTTTTTTTCACGAGTAGGGCCTGGGCCCAAGTTGCCCTAGGCCCAGTTACGCCCCTGCTCCGCTCTGTCGCCGCCACGTGAAGAGGATGTGGCCGTTGACGTCGCAGGAAACCATGGAGACTCACCGCCCTCCCCGTCCAATCCTATCCGCTTCGCCTCCTCTGCCGCGGTCCAGCTCCCCGGTTTCCATCCCCTTTACTCCATCACCGCTGCTTCTTTCTATGACGACTGTGGCGCGAAGACAGCAGATGCAAAGAAGGGAGGAGATGCCCCCCTTGCCCTCCCCCCTCACATCCCTCTCCGCCCTCCCCGTCTTGTTGCGCTTGCCGGTGGAGAGAGAAGAGAGCGACGGTAAAGAGGAGGAGTACAATAAGTCACCGGCCTCCCTGTCTCCTCCCTCTCCGCCCCGCCCCTGTTCGTCGGCCTCCGTCGATTCGGCTTCTGCCATGCCTCCGTCGATTCCGCCTCCGCTCTCGCTCAGTGGTGTGCCAGCGCCCGTGCTAGCCGCATCTGGGGAAGAAGGGGAAGAGATAGAGAATAGAGATGATTAGGTGGAGTGTTGTGTCACGATCCCACATGAATCCCACTGATGAACACAAGCACAAGAGCAATATATCCACTCCAACTCTGTATATCAAGTTCAGGGATACAAATTGGAAGAACTAGCAGCAGAGATTGGGAAGAGAAGCAAGGGTAAAGGGTATCAGAGAAACACAGAGTAGGGATTCGAGGAGAAATCAAGAGGAGGAAGAAGAGGCCGTAGCCATCAGGTTCTAATTCATCGTTCTCTTCTCTCACTGCCACTGTTGGTATTTGTACTGCTTGGTTGCTTGCTCCTTCAGTATGTGAGCTGGGCCAAGCCCATTCCTCCTGCAGCCCATGCAGCCCACCAGATACATGACAAAGTATTTGAAGTTTCATAACCAGTCAACCCTCGTACTCGTAGACCAATATCGACAAAGGATTTTAGAGAAGGGGTCAAGAGATGTTTCGAAGTCCAGTTCTTGGAACGATCTGGCTTGTTCTCGAGGACGATGAGAACCGGGTCAAGCTCTTCTAGTTCAAGATAGAACCACTTTGACCTCCAACCGCTCCGAGAAGAAGGACACTGGAAAGGAATGTATTTGGCTTTCATGCCATCACGGAGGTGGAATCCACAGCATCCAGAGATTCTATTGGATTCCATCCACCGGAGTTTATAATAATAACGGAAGAGGTCAAGGAAGGGCACTACCCCAATGTAGGCCTCACGGAGATGAAAAAAAAATGTTCAGAAAGGCGATAGAATTGGGGTTGAGATGCAAGGAGAGACCATAAAAATTCAAGATGACCAAAAGGAATTTAGAAGGTGGAGGCAAAAACCCGCAGCAGACAAAGTCCTCTACTACTACCATACGGCGTAAAGCAGGAGCAGGTTTAATACCTCCTTCCTCCTGCTCCATGGTCTCCTGGCTGGGAAGGGCCCCATCCGCACGAAGCTTCTTCAATGTAGCTTCATCGGAGGATGATTTGCCAAGATCCAT
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| CDS seq | ATGGATCTTGGCAAATCATCCTCCGATGAAGCTACATTGAAGAAGCTTCGTGCGGATGGGGCCCTTCCCAGCCAGGAGACCATGGAGCAGGAGGAAGGAGATGCGGCTAGCACGGGCGCTGGCACACCACTGAGCGAGAGCGGAGGCGGAATCGACGGAGGCATGGCAGAAGCCGAATCGACGGAGGCCGACGAACAGGGGCGGGGCGGAGAGGGAGGAGACAGGGAGGCCGGTGACTTATTGTACTCCTCCTCTTTACCGTCGCTCTCTTCTCTCTCCACCGGCAAGCGCAACAAGACGGGGAGGGCGGAGAGGGATGTGAGGGGGGAGGGCAAGGGGGGCATCTCCTCCCTTCTTTGCATCTGCTGTCTTCGCGCCACAGTCGTCATAGAAAGAAGCAGCGGTGATGGAGTAAAGGGGATGGAAACCGGGGAGCTGGACCGCGGCAGAGGAGGCGAAGCGGATAGGATTGGACGGGGAGGGCGGAGCAGGAAGCCATCGGAGTTTGCATGGGTGCATGCATCGAAGATTGACCAGGAATTTTTCTGTTGGATATGGGTGAGTTTGCATGTTATCTATGTCAGGCCGGGGCGGCGGATGAATCAAGCATCACCAGGGAAGTCTGAAGAACAACCTGAGGAAACTGAAGAAATGGAAGGGGGCAACAAGGCTGATGACGCGATACAGAAAGCATCAGAGCAGGAGGCGGACATGGGCCGTGGGCGTCGCAGCAGACGTCCCCCCAGTGTGCGTGTTGTTGGGCCGGAATGGGCTAAATGA
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| Protein seq | MDLGKSSSDEATLKKLRADGALPSQETMEQEEGDAASTGAGTPLSESGGGIDGGMAEAESTEADEQGRGGEGGDREAGDLLYSSSLPSLSSLSTGKRNKTGRAERDVRGEGKGGISSLLCICCLRATVVIERSSGDGVKGMETGELDRGRGGEADRIGRGGRSRKPSEFAWVHASKIDQEFFCWIWVSLHVIYVRPGRRMNQASPGKSEEQPEETEEMEGGNKADDAIQKASEQEADMGRGRRSRRPPSVRVVGPEWAK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g43540 | LOC_Os03g43540.1 | Chr03 | 24308939 | 24313541 | - | MSU_osa1r7 | ||
| CDS seq | ATGGATCTTGGCAAATCATCCTCCGATGAAGCTACATTGAAGAAGCTTCGTGCGGATGGGGCCCTTCCCAGCCAGGAGACCATGGAGCAGGAGGAAGGAGATGCGGCTAGCACGGGCGCTGGCACACCACTGAGCGAGAGCGGAGGCGGAATCGACGGAGGCATGGCAGAAGCCGAATCGACGGAGGCCGACGAACAGGGGCGGGGCGGAGAGGGAGGAGACAGGGAGGCCGGTGACTTATTGTACTCCTCCTCTTTACCGTCGCTCTCTTCTCTCTCCACCGGCAAGCGCAACAAGACGGGGAGGGCGGAGAGGGATGTGAGGGGGGAGGGCAAGGGGGGCATCTCCTCCCTTCTTTGCATCTGCTGTCTTCGCGCCACAGTCGTCATAGAAAGAAGCAGCGGTGATGGAGTAAAGGGGATGGAAACCGGGGAGCTGGACCGCGGCAGAGGAGGCGAAGCGGATAGGATTGGACGGGGAGGGCGGAGCAGGAAGCCATCGGAGTTTGCATGGGTGCATGCATCGAAGATTGACCAGGAATTTTTCTGTTGGATATGGGTGAGTTTGCATGTTATCTATGTCAGGCCGGGGCGGCGGATGAATCAAGCATCACCAGGGAAGTCTGAAGAACAACCTGAGGAAACTGAAGAAATGGAAGGGGGCAACAAGGCTGATGACGCGATACAGAAAGCATCAGAGCAGGAGGCGGACATGGGCCGTGGGCGTCGCAGCAGACGTCCCCCCAGTGTGCGTGTTGTTGGGCCGGAATGGGCTAAATGA
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| Protein seq | MDLGKSSSDEATLKKLRADGALPSQETMEQEEGDAASTGAGTPLSESGGGIDGGMAEAESTEADEQGRGGEGGDREAGDLLYSSSLPSLSSLSTGKRNKTGRAERDVRGEGKGGISSLLCICCLRATVVIERSSGDGVKGMETGELDRGRGGEADRIGRGGRSRKPSEFAWVHASKIDQEFFCWIWVSLHVIYVRPGRRMNQASPGKSEEQPEETEEMEGGNKADDAIQKASEQEADMGRGRRSRRPPSVRVVGPEWAK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0027370 | RBH | 0.434756 | 0.0 | 0.491190 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0027110 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0027170 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0027200 | RBH | 0.0 | 0.092048 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0026960 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0425800 | RBH | 1.1005235 | 1.997839 | 2.7023385 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0026720 | RBH | 0.0 | 0.0 | 0.319695 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0430300 | RBH | 0.7966285 | 1.4626765 | 3.069411 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0026990 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0027020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0027120 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0026840 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0026810 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G026810 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0026820 | RBH | 0.0 | 0.0 | 0.775711 |
