Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g42240 | OGI:03067870 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:23499435-23503720 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCTGCGCTCTCAGCGTCTGTATTCTCCTCAGTTGGATACTTGGATGACTCCATGAGCATACTCCTACTATCTGTCTATCTCTGTCTCTCTCTCTCACACAAACACTACGATATGCTTGGGAGCTTCATCTCATCTGGACTTCAGACCACCCAGTATGTTTCTACCTGTGACTCTCTTCTTCAAGTTTCTTTTCCTCCCATCCTTTGCGTGAGAGTATCTCTCATTTCTCACTCCACAATAATACTATTAGTACTCTGGTACTGTAATGGGGATTTCCTTTTTTTTTAAAAAAAAAATTGTAATGCGGAACCTATTCCTGAAATAAAATGTTCTTAGGTTCTAGCTTGTCTTGGACTTGGACTTGCTAATATTTCTTGAACTAACGTTCTTTAGATTGCATTGCTGTCTCCGGAAATTTAGTACATCTTGTTTAAAGGAAAATCAGTGAAGTAGCATGCATCTGAAGAGGGGAAAAAAGTTACTACTCAAGTAACAAGAGGCTTCGTCTTTACCTACATTCTGTGGTTTCAAGATTGTGGTTTTCTATTGAATAGGAATCTGATTTAAGCTGCAAATTTGAGTTGTCATGGCTGGAGGTAATACCCATAGGAAGAAGTCTTGTGCTTGTTGCAAAGAATACCTGGAGCATCTGGGTGGAAAAATGAGATGTTTCCTCAGGCGAATGGCTGCTGATTCTATGCACAGCATGGTAAGCTCCTCACAAGTTGGTGTTTTTTTTACTCCAAAGTGTCTCATCTAGTCATGATATATTGGAATTCCCCTTTCAAAGTTTTCATCTCTTCCTGAATATTTCATTGGCTGTACTACACATAGTTGTTTGGAATGCATTTCCTCACTGCAATTTATACCTTTTACATGATATCAAGTTTTATGTTGCCACTTATTGTTGTTTAGAGAAGTCCATATCAATACTGTTTCAAACATTGTTGCTACAGATCATGCCAGATAGATTTGTCAGCCATTTTGGAGGAAAGATCCCAGGAACCATAAAATTGGAATCTCCTAATGGTATTTTGTATGTTGTTGAAGTCACTGAGTGCATGAATAAGACACTCCTACAATGCGGTTGGGAGGCATTTGTTGATGCTCATAACATAAAAGAGGGTGAATCTTTGTTATTCCGACACATCGAGAATTCCCGTTATGAGGTTCTGATTCTAGATTCTGATGACTGTGAGAAAGTATTCTCCTGTGCTGGCATAAGAAACGGTTCTTGTGTTCAAGACAAAACTGTAGATCCTGTTGATAGTTCAGGTAGCTCTAGTAATGATACCACGCAATCATCACGGAGTAGAAACACTGAAAATTTGACAGCAATGTGCTCTTCATCTGAGAAATCAGGTAATATTTTTTACATTATTTGGAAATGTGCTTCAAATTTTGGACTACTGTACATGCAGTTTACACAAGAGATTGAACCTCTTGGGAAATTTTGTACAGGAGAAGACAGTCCTTCTGGATATGAATTTCATGAGTCAGTTGAACCTCAGACACCTTCAGGGTCTGATTACGTGCTATCACGCAGGACTTATTTATCTGAAGCACAAAAGGAGAGAGTGGTCACGCATATCCAGGATATTCAACCTGAAATTACTGTGTTTGTGGCTGTTATGAAGAAGTGCAATCTTCAGTCTCCAGCTCCTTATCTGGTAACTTTATTATTTTACGTCGAATGGGTAACTCACTGCTTTCAAAATGATCTGATATTTGCTTGATGAATCTGTATGTGTATGTTGTTAATATCAGAATATGTCTTTTCATTGTTGTGGTTTCAATAATAAATATTATATAGGAATTTTTTTAACTATGTGAAAAATTACATAAAAACATTTTTTTTTTGCTTTTTTATAGTTCATCCTGAGTTTTCGTATTCTTTGTAACCTGTTCAAAGCATCACATCCTTCCATATTGTTGTAATCAGGTTATTTCTAGCCGCTATGCTTCTGTACACTTTCCACGTGAAACCGCAACTATCACGCTTCAGAGGCCAAGCAAGAGAAAGAAGTGGTATCCCAGGTTCTACAAGAGAATAGACAAGAGTGATCACATGCTTAGGGGACAGTGGCAAAACTTTGTCCATGACAATTGTCTGCAGGAAGAAGACATCTGCCTCTTCGTACCAACAAAAGGAGGAAGAAACTTCGCGTTTACTGTCCATTTGCTCCAAGCAGAAGTGACTCATTCCAGGGATGGGACTGATGTTCACAAGATTGGCTCAAGTCAAAACAAAAGAAATTCAAAGATGGCTTCACAAGTCCATATTAAGGAGGCACCAGGTGATGGCATCATATAAATGTATTTGTCATTAATTTGACACATTTTAGGCATTTTGGTTATTTTTTTTTCTTATGATCTAAAATAATTTGCAGGGGGGGACGTTTCCTCTGAGAGCAACAAGCATGGAGTTTCACACGAATCACTGGAGAGTGAAGACTCTGACGGTCCTTCTGAACCTCCCTACATCTCATCAATGAGACGCCGGTTATCTCAATTGCAGAAGAAGACAGTTGAGGAGAAAGTGCGAGCCATCCAATCTGAAATTCCCATTTGTGTAGCAACCATAAGCAAACTTGCTGGCAGTGGTGGCAAGGGGAAATTCCGCGGACTAGTAAGATCAATTCCTTCTTTTTCTTTTTAAATCTTGAGCGGTCTGAATCCTTAGTTTCAATAGGGTTTAGGGTCATGAAATCTTGAGAGGTCATGAAATCTGCTGCGACAATCAATCTGCAAACTTTTTTATCGAGAAATTTTAGTTCTTGAGAGGTACCAAAATAGCAAATTTTCGTACCTTCTAGTAGTACCGGAGGTACCAAATTTTACACTAAAAAAATATGGTACCGCCTCAAGGACCATAAAATCACTCTATTTTATCCGGTTGGTGAGCCTATAGGTCGGGTTTGTTGCTTTTGTAAACCTTTCCTTCGTCTTAATGCAATTATATGCAAACCTTTTGCATACCCCCTAATATTGGGTTGCCATTTAAGTAAAAAAAAGAACAGTATTTAGGCCAGGTTTTGTAAGCACTAGGTATTGTGTGAACTGAAATTTTGCTTTTTATCAACTGCCGCAGCATGTGTGGAGAGCTTGTAGTAAGTGATCATAGTTGTGTGCATCCATGTGATTCCATTAGATAGAATGATATATCAAACTTCTCCAAAATGCCGTAACATACTTTTTCTAGAAATGCATTTTTAAACATTTCCACTAAAAAGGATAGTTATCTTCGAATATCTTGTTTTTAAATACCCCCTTAATTCCATAATATAAGACATAACTACTTTTTCAGATGTTTCATAATATAAGGCGTGCATGCATACATGCAATTAATTACTCCCTCCGTCCCAATATGTAGCAACCTAGGACATATGTCCAAATTCGTAATCCTATGATGGGTCTAATTCCATCTTAGGTTGCTACATATTGGGACGAAGGGAGTATTACATCTTCTCCACTAAATTATTATTTTTTAAAAAATTCTTCACTCTTAAAGATTTCTAATTCTATTGGGTGCATGCATTATATTTATTAGGGTGATCCAAACTAAGAAGTCATAATAATTATTTCTTAGTCTTTGGGTTAAGGGTGGTTGTGCCTTATATTTTGGAATGGACGGAGTACTTAAAATATTTCATTTTATACACTGTTCTTTTGGCAACTCATGAATCCACTAGCTAGTGGTAAGAGCAAATGCCACACAGGAAAATTGTAAAACCTGTCACTGTAACTTGTTACAATTCTATCTGTGTAATATCAGGAGCTAAGTTCGCGATATGCTGCCTCATATCTTCCGGATAAAAATCATCAAACTTTGGTGCTCCAATGCAAGGGGATGATCTGGCAAATCAATTTGGTGGTGCGTCGTAGATATACAAAGGGAAAGAGGTGGTTCCTTACTGCAGGTTGGCGCAAATTTGCTCACGACAACCGCCTTCGTGTCGGGGACTTCTGTCTGTTCGAACTGAAGAAGAAGAAGAAGCTCACCATGGAGGTCCATATCATTTCCAATCTGCAGCGTTACCCTGAAGTAGAGTAGAATGATGCATAATGTCTGATCGATGATACTTTGGAAGCTTATTTTTTCTTGTTTTGTAATCAGAATTCCGAAAGGAGGATGAAACCTGTTTGTATTTGTTCTTCAATTTGCTTGTTTTGCAACCTGAAGTCCGAAAGGGTAGGAGGATGAAACCTATTTGTATTTGTGAATGATGTTAACTTTCCGATGCACTATATCCACCTTGTGAGGCCCTGAGAATTTGTGGTCTTCA
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| CDS seq | ATGGCTGGAGGTAATACCCATAGGAAGAAGTCTTGTGCTTGTTGCAAAGAATACCTGGAGCATCTGGGTGGAAAAATGAGATGTTTCCTCAGGCGAATGGCTGCTGATTCTATGCACAGCATGATCATGCCAGATAGATTTGTCAGCCATTTTGGAGGAAAGATCCCAGGAACCATAAAATTGGAATCTCCTAATGGTATTTTGTATGTTGTTGAAGTCACTGAGTGCATGAATAAGACACTCCTACAATGCGGTTGGGAGGCATTTGTTGATGCTCATAACATAAAAGAGGGTGAATCTTTGTTATTCCGACACATCGAGAATTCCCGTTATGAGGTTCTGATTCTAGATTCTGATGACTGTGAGAAAGTATTCTCCTGTGCTGGCATAAGAAACGGTTCTTGTGTTCAAGACAAAACTGTAGATCCTGTTGATAGTTCAGGTAGCTCTAGTAATGATACCACGCAATCATCACGGAGTAGAAACACTGAAAATTTGACAGCAATGTGCTCTTCATCTGAGAAATCAGGAGAAGACAGTCCTTCTGGATATGAATTTCATGAGTCAGTTGAACCTCAGACACCTTCAGGGTCTGATTACGTGCTATCACGCAGGACTTATTTATCTGAAGCACAAAAGGAGAGAGTGGTCACGCATATCCAGGATATTCAACCTGAAATTACTGTGTTTGTGGCTGTTATGAAGAAGTGCAATCTTCAGTCTCCAGCTCCTTATCTGGTTATTTCTAGCCGCTATGCTTCTGTACACTTTCCACGTGAAACCGCAACTATCACGCTTCAGAGGCCAAGCAAGAGAAAGAAGTGGTATCCCAGGTTCTACAAGAGAATAGACAAGAGTGATCACATGCTTAGGGGACAGTGGCAAAACTTTGTCCATGACAATTGTCTGCAGGAAGAAGACATCTGCCTCTTCGTACCAACAAAAGGAGGAAGAAACTTCGCGTTTACTGTCCATTTGCTCCAAGCAGAAGTGACTCATTCCAGGGATGGGACTGATGTTCACAAGATTGGCTCAAGTCAAAACAAAAGAAATTCAAAGATGGCTTCACAAGTCCATATTAAGGAGGCACCAGGGGGGGACGTTTCCTCTGAGAGCAACAAGCATGGAGTTTCACACGAATCACTGGAGAGTGAAGACTCTGACGGTCCTTCTGAACCTCCCTACATCTCATCAATGAGACGCCGGTTATCTCAATTGCAGAAGAAGACAGTTGAGGAGAAAGTGCGAGCCATCCAATCTGAAATTCCCATTTGTGTAGCAACCATAAGCAAACTTGCTGGCAGTGGTGGCAAGGGGAAATTCCGCGGACTAGAGCTAAGTTCGCGATATGCTGCCTCATATCTTCCGGATAAAAATCATCAAACTTTGGTGCTCCAATGCAAGGGGATGATCTGGCAAATCAATTTGGTGGTGCGTCGTAGATATACAAAGGGAAAGAGGTGGTTCCTTACTGCAGGTTGGCGCAAATTTGCTCACGACAACCGCCTTCGTGTCGGGGACTTCTGTCTGTTCGAACTGAAGAAGAAGAAGAAGCTCACCATGGAGGTCCATATCATTTCCAATCTGCAGCGTTACCCTGAAGTAGAGTAG
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| Protein seq | MAGGNTHRKKSCACCKEYLEHLGGKMRCFLRRMAADSMHSMIMPDRFVSHFGGKIPGTIKLESPNGILYVVEVTECMNKTLLQCGWEAFVDAHNIKEGESLLFRHIENSRYEVLILDSDDCEKVFSCAGIRNGSCVQDKTVDPVDSSGSSSNDTTQSSRSRNTENLTAMCSSSEKSGEDSPSGYEFHESVEPQTPSGSDYVLSRRTYLSEAQKERVVTHIQDIQPEITVFVAVMKKCNLQSPAPYLVISSRYASVHFPRETATITLQRPSKRKKWYPRFYKRIDKSDHMLRGQWQNFVHDNCLQEEDICLFVPTKGGRNFAFTVHLLQAEVTHSRDGTDVHKIGSSQNKRNSKMASQVHIKEAPGGDVSSESNKHGVSHESLESEDSDGPSEPPYISSMRRRLSQLQKKTVEEKVRAIQSEIPICVATISKLAGSGGKGKFRGLELSSRYAASYLPDKNHQTLVLQCKGMIWQINLVVRRRYTKGKRWFLTAGWRKFAHDNRLRVGDFCLFELKKKKKLTMEVHIISNLQRYPEVE |
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| Function | B3 domain-containing protein Os03g0619800 [UniProtKB/Swiss-Prot:Q6AV21] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g42240 | LOC_Os03g42240.1 | Chr03 | 23499435 | 23503720 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTGGAGGTAATACCCATAGGAAGAAGTCTTGTGCTTGTTGCAAAGAATACCTGGAGCATCTGGGTGGAAAAATGAGATGTTTCCTCAGGCGAATGGCTGCTGATTCTATGCACAGCATGATCATGCCAGATAGATTTGTCAGCCATTTTGGAGGAAAGATCCCAGGAACCATAAAATTGGAATCTCCTAATGGTATTTTGTATGTTGTTGAAGTCACTGAGTGCATGAATAAGACACTCCTACAATGCGGTTGGGAGGCATTTGTTGATGCTCATAACATAAAAGAGGGTGAATCTTTGTTATTCCGACACATCGAGAATTCCCGTTATGAGGTTCTGATTCTAGATTCTGATGACTGTGAGAAAGTATTCTCCTGTGCTGGCATAAGAAACGGTTCTTGTGTTCAAGACAAAACTGTAGATCCTGTTGATAGTTCAGGTAGCTCTAGTAATGATACCACGCAATCATCACGGAGTAGAAACACTGAAAATTTGACAGCAATGTGCTCTTCATCTGAGAAATCAGGAGAAGACAGTCCTTCTGGATATGAATTTCATGAGTCAGTTGAACCTCAGACACCTTCAGGGTCTGATTACGTGCTATCACGCAGGACTTATTTATCTGAAGCACAAAAGGAGAGAGTGGTCACGCATATCCAGGATATTCAACCTGAAATTACTGTGTTTGTGGCTGTTATGAAGAAGTGCAATCTTCAGTCTCCAGCTCCTTATCTGGTTATTTCTAGCCGCTATGCTTCTGTACACTTTCCACGTGAAACCGCAACTATCACGCTTCAGAGGCCAAGCAAGAGAAAGAAGTGGTATCCCAGGTTCTACAAGAGAATAGACAAGAGTGATCACATGCTTAGGGGACAGTGGCAAAACTTTGTCCATGACAATTGTCTGCAGGAAGAAGACATCTGCCTCTTCGTACCAACAAAAGGAGGAAGAAACTTCGCGTTTACTGTCCATTTGCTCCAAGCAGAAGTGACTCATTCCAGGGATGGGACTGATGTTCACAAGATTGGCTCAAGTCAAAACAAAAGAAATTCAAAGATGGCTTCACAAGTCCATATTAAGGAGGCACCAGGGGGGGACGTTTCCTCTGAGAGCAACAAGCATGGAGTTTCACACGAATCACTGGAGAGTGAAGACTCTGACGGTCCTTCTGAACCTCCCTACATCTCATCAATGAGACGCCGGTTATCTCAATTGCAGAAGAAGACAGTTGAGGAGAAAGTGCGAGCCATCCAATCTGAAATTCCCATTTGTGTAGCAACCATAAGCAAACTTGCTGGCAGTGGTGGCAAGGGGAAATTCCGCGGACTAGAGCTAAGTTCGCGATATGCTGCCTCATATCTTCCGGATAAAAATCATCAAACTTTGGTGCTCCAATGCAAGGGGATGATCTGGCAAATCAATTTGGTGGTGCGTCGTAGATATACAAAGGGAAAGAGGTGGTTCCTTACTGCAGGTTGGCGCAAATTTGCTCACGACAACCGCCTTCGTGTCGGGGACTTCTGTCTGTTCGAACTGAAGAAGAAGAAGAAGCTCACCATGGAGGTCCATATCATTTCCAATCTGCAGCGTTACCCTGAAGTAGAGTAG
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| Protein seq | MAGGNTHRKKSCACCKEYLEHLGGKMRCFLRRMAADSMHSMIMPDRFVSHFGGKIPGTIKLESPNGILYVVEVTECMNKTLLQCGWEAFVDAHNIKEGESLLFRHIENSRYEVLILDSDDCEKVFSCAGIRNGSCVQDKTVDPVDSSGSSSNDTTQSSRSRNTENLTAMCSSSEKSGEDSPSGYEFHESVEPQTPSGSDYVLSRRTYLSEAQKERVVTHIQDIQPEITVFVAVMKKCNLQSPAPYLVISSRYASVHFPRETATITLQRPSKRKKWYPRFYKRIDKSDHMLRGQWQNFVHDNCLQEEDICLFVPTKGGRNFAFTVHLLQAEVTHSRDGTDVHKIGSSQNKRNSKMASQVHIKEAPGGDVSSESNKHGVSHESLESEDSDGPSEPPYISSMRRRLSQLQKKTVEEKVRAIQSEIPICVATISKLAGSGGKGKFRGLELSSRYAASYLPDKNHQTLVLQCKGMIWQINLVVRRRYTKGKRWFLTAGWRKFAHDNRLRVGDFCLFELKKKKKLTMEVHIISNLQRYPEVE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.162903 | 0.0 | 0.075780 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0619800 | RBH | 0.315431 | 0.0 | 0.313310 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g42230 | RBH | 0.808113 | 0.465356 | 0.168232 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0619800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0026610 | RBH | 0.0 | 0.0 | 1.055874 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0026350 | RBH | 0.0 | 0.0 | 0.573906 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0026410 | RBH | 0.0 | 0.0 | 0.356735 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0026440 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0026200 | RBH | 0.324803 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0414300 | RBH | 0.092742 | 0.2536795 | 3.8409405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0025990 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0418700 | SBH | 0.07452 | 0.174806 | 0.767733 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0026250 | RBH | 0.025193 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0026270 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0026380 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0026110 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0026020 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G026090 | RBH | 0.0 | 0.0 | 0.187105 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0026040 | SBH | 0.0 | 0.0 | 0.408917 |
