Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g41800 | OGI:03066960 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:23213785-23217778 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGTTGCCCTCCGGCGAGCTCTCCACACCAACAATGTACCCCAACGCGCCAAGCAGGAGATGCTCCCTCTCAATGGATGCCGCCATGCTTGGATGATAACGACATTGCAACCCCCACGCCGAATAGGGTCTACAACCATGTAAGTTCCACTCCTTCAATCCCACTGTGTTCTATGGTGAATATTATCGACGTCTAGTTTGCGATAGTGATGCACCAAAAGCACATTATTTCGAGCCACGATTATTTTTTTTCGTTGCTATCGCCGTGTGACGATACTAACTACTCCCACTAAAAATATACCATTTTTTATATTTTATATATGGTTTGCCAATATTTCATGAATCACATTCACCGATTGATTCTTTTAACGACAAGCAATTCTCATTGCATTCAATAGTTAAAAACTAACTCAACTCCCATTCCTAGAACAACTAGGTTCAACAAACATCTATGCACGATAACTTCGATCTATAAGTAATTTTATATCTCTAAACCTGACACTCTTGCTACGTAATTTTGGATGTTTTATATCACTACCTTCATGAATACGAAAGTTATTTTTAAACTATCACAATGATCCCGAACGCACGTCTCTGTTTTATTAACCGAATTAATCCCATACCTAAGGAATACACTAGCAACTGGATACAAGCCATTTTTTAACTGGCAATCCACGTGCTATACTCAGCAGCCATAATAATTTTAGAAATGGTATCTAAACTTTCATAATGTTTCCAGTATTTCATCGATAATTTATTAACAAAACTTATCTTTGCTATATAACAGGGTCCTAGCGTGCCACCGCATATGGTGCCCACCGAAGGCATGGCTTTCCCTACATACGACAACGCATACAACTTCTACCAGAGGTATGCATGTCACGCTGGATTTGACATCAAGAAGAGCCGTACGCACAAAGCGTTTCGCGAGGTGTGTTGTACGAGGGAGGGCAAGCACGTGTCGAAGGTCACCGATGGTGATAGACAACGGAGGAGACCGTCCAAGAAAATGGGGTGCAAGGCTTTTATGAAGCTGAGGCACAACTACGACGGTGGTGCGCTCTCATCGGTGGTGTATGATGTGGTCGAGCTACAGCACAACCACCCTCTAACGCCATCCCCTTCGGCGGTAAAGCACATGCGTGCACATAAGAACCGCGACGACACAGTTATGCAATTTGTGGACACTATGCAAGAAAGTCACGTGCCGCAAAGTTGTATCATGGGCGTTCTATCTGATCTCCATGGAGGCCAAGACAATATCCCTTTCACTTCACGCGACGTTGAGAACAGGTGATTTTTTTAAATTATTCCGTTTCTTGGCTTTGTGATGTTGCTTTCATGAAAGTTTCTTTTCGTGCTTTCTTGCACGAAGACACAAATGTGGATTGTAATTAGGACGTTCCCATCTGACCGATGCAGGAAAGTAGCCAATGTCCGAAAGGAAAATGCGAATGACATCAACAAGTTGTTGGAGTTTTTCAACGAGTGCACGTTGCAAAACCCTAAGTTCTACTGGGACGCCCAGCTTGATGAAAATGGTGTCATTAAGAACTTGTTTTGGAGTCATGCTAGCAGCCAGGTTGAATTTGCTGACTTTGGAGATGCGGTAACGTTTGACACCACATACAAAACTAATATTTACGAAATGCCACTTGCAATGTTTGTTGGTGCAAACCACCATATGCAGAGCACACTCTTCGGATGTGCCTTGCTCAGAGACGAAAAGGTGCAGTCATTTGAGTGGTTATTCAACACCTTCAACAAGTACATGGCTAATTTCCCGGCTCCGCGCTGCATCCTAACAGGCAAGTCTATCTACAAAAAACTCCCTATTGTCATCCACCATTAATTTTTTCCGTGTCTCCAATTTATCTACACTTCCTGTACGATTGTTTTACTGCCATTTACATCATTTTTTTTTCAGATCAAGATCCTGCTATGGCAGTCGCTGTCGGGCGGTGCTTCCCTGGGATAATACACTGACTCTGTAGGTGGCATATCCTCAACCGCCACTCTGACCCATTGAACACCATTTTTGCACGGGACGCTCAAATTGAACCAGACATGATGTTGTGCATCAATCAAACCTACACGCCTTATGAGTTTGAAACATCATGGGATCAATTCATAAAGAGTTATGATTTGGAGGGCTGTCCCATCATGAAAGCTTTATATGATATCAGGGAAAAGTGGGTGCCTGCGTTCTTCAAGAAGGAATACTGCAGGAGGATGACGTCGACGCAGCGGAGCGAGAGCATGAACAAGTTGGTGAAGCACAAGTTTGCTGACCACCAAACCGCGCTGCACCGTTTTGCTCGGAGAATGTTGGAGGTTATAACTGACAGGAAGGAGAAGGAGGCTGCCGAGACAAGAGCATGCTCGGTTAGTGATATTTTTACTGGGGGAAACGGTCTGACATCACTCCTATAATTCTACTAAATTTTAACTCACACCAACTAATTATATTTCTTTTTGTACATGGAAAGCCAATGTTGGCTGTACGGTGGCCATCTGTTATACAGATGTCGAGACTTTACACCAGGGCGGCTTTCAGATTGTTCGAGGAGGTGCTTCAGGACAGCACTGACTTCAGGATCACACAAGACGACAATTTCCGCAACGGGTGGGTAGTTGTCGACGTTCGATGTCGCAATTTCGGTATTTGCATAGTATGGGCATCGTTGGTACAAGGATATATGCGAGACTAAGGTAAAACAGATAGGGACGAGGATTTTTATACAGGTTCGGGCCCCTGAATTGTCAGGTAATAGCCCTACATACTGTTGGCCGAAGCAGGTCGTTGCTCTTATTCATCATAATCACACCAGTACAATATTTGGGGTAGCCTATCTAACTGTTGTCAACTTAGCAGACTGAAGTATCATCACGTAGTCGACAACAGGGTAGTCTTCCTCCTCGAATCCATGCCCGGCGAGATCAAAGACAGCGCTAGATTCCTCTCTTTGGTTCCGCAGGTACCATATGGGGTTTTCCTAGGCTTATCTCTGAAATCGATATCCGGCGTCTTGTCTTGGCATATGTTGGCTTGTATGTTGATCTTGTTTATTGATCTATTGTTCCGTGTCCCCTCTCCTCCTAGGGGGCCTTGTATTTATACCCCTAGGTGTCCCCTTGTCCAAGTAGAACTAGGGAAACCAATATGGATACAATCCGAGTAGTCCTTATCGTTTCCATGTAGAACTCTAGTCATCCTTCCTTATGCGGAACTCCTCCTATATCCGAAGGTTGTTTCCGTATAAGACATGGTATGTGGTGGGTCCTGCCGAGATTTAGTCAACTACTGCTAGGTATGTGGTATCCATAACCCTGACAGCAGTGTCACACACCAAACATTCCGAAAAACACAACTAGTGTCAGAAGCAATTCAAGGTTATTGCAGATGTCGATGAAGGGGTATTTACATGCAAGTGCAAACAGTGGGAGCATACAGGTATTTTTATAGTATAAACTCGATATCGATGTTTTATGTACGTTTAACATTTTCAGCATTCCGTTATCACACATCGCAATACTTTGGTTTAAATGCTCTCTCCTTTTTTTGGATGTAATTTAGGCATGTTCTGCACACACATGCTCCGGGCATTTGTTCATGTACAAGTTGAGAAGATACCCGCTGTCTACATCCTAAAGAGGTACACAATGAAAGCGAAGAGCAACGTGCCCTTTGATAGGCGGGATCGAGAGACAACTAGACCAGATGGGGTTCAAGAAAGTTACAGGACAAATATGATGATGATTGAAGCGTTTGGAGTTGCTAGGGCGGCGTGCAAATTGAAGGTAGCGTTTGACAGGGCTATGGCTGTTCTGAAGGGATTGCGTAGTCAAGTAGAGGAGATACCGCGTGACTCTACTGCGACTGTTGACACCAATACGCAAGATGGCATTGCTGGACGAGTTCAAAACGCCGAAATAAGCAGGGAGCCCCCCTCCCCCCCCCCCAAAGTCAAGAATAAAAGGAAGGACCCATGA
More
|
||||||||||
| CDS seq | ATGGGTTGCCCTCCGGCGAGCTCTCCACACCAACAATGTACCCCAACGCGCCAAGCAGGAGATGCTCCCTCTCAATGGATGCCGCCATGCTTGGATGATAACGACATTGCAACCCCCACGCCGAATAGGGTCTACAACCATGGTCCTAGCGTGCCACCGCATATGGTGCCCACCGAAGGCATGGCTTTCCCTACATACGACAACGCATACAACTTCTACCAGAGGTATGCATGTCACGCTGGATTTGACATCAAGAAGAGCCGTACGCACAAAGCGTTTCGCGAGGTGTGTTGTACGAGGGAGGGCAAGCACGTGTCGAAGGTCACCGATGGTGATAGACAACGGAGGAGACCGTCCAAGAAAATGGGGTGCAAGGCTTTTATGAAGCTGAGGCACAACTACGACGGTGGTGCGCTCTCATCGGTGGTGTATGATGTGGTCGAGCTACAGCACAACCACCCTCTAACGCCATCCCCTTCGGCGGTAAAGCACATGCGTGCACATAAGAACCGCGACGACACAGTTATGCAATTTGTGGACACTATGCAAGAAAGTCACGTGCCGCAAAGTTGTATCATGGGCGTTCTATCTGATCTCCATGGAGGCCAAGACAATATCCCTTTCACTTCACGCGACGTTGAGAACAGGAAAGTAGCCAATGTCCGAAAGGAAAATGCGAATGACATCAACAAGTTGTTGGAGTTTTTCAACGAGTGCACGTTGCAAAACCCTAAGTTCTACTGGGACGCCCAGCTTGATGAAAATGGTGTCATTAAGAACTTGTTTTGGAGTCATGCTAGCAGCCAGGTTGAATTTGCTGACTTTGGAGATGCGGTAACGTTTGACACCACATACAAAACTAATATTTACGAAATGCCACTTGCAATGTTTGTTGGTGCAAACCACCATATGCAGAGCACACTCTTCGGATGTGCCTTGCTCAGAGACGAAAAGGTGCAGTCATTTGAGTGGTTATTCAACACCTTCAACAAGTGGCATATCCTCAACCGCCACTCTGACCCATTGAACACCATTTTTGCACGGGACGCTCAAATTGAACCAGACATGATGTTGTGCATCAATCAAACCTACACGCCTTATGAGTTTGAAACATCATGGGATCAATTCATAAAGAGTTATGATTTGGAGGGCTGTCCCATCATGAAAGCTTTATATGATATCAGGGAAAAGTGGGTGCCTGCGTTCTTCAAGAAGGAATACTGCAGGAGGATGACGTCGACGCAGCGGAGCGAGAGCATGAACAAGTTGGTGAAGCACAAGTTTGCTGACCACCAAACCGCGCTGCACCGTTTTGCTCGGAGAATGTTGGAGGTTATAACTGACAGGAAGGAGAAGGAGGCTGCCGAGACAAGAGCATGCTCGATGTCGAGACTTTACACCAGGGCGGCTTTCAGATTGTTCGAGGAGGTGCTTCAGGACAGCACTGACTTCAGGATCACACAAGACGACAATTTCCGCAACGGACTGAAGTATCATCACGTAGTCGACAACAGGGTAGTCTTCCTCCTCGAATCCATGCCCGGCGAGATCAAAGACAGCGCTAGATTCCTCTCTTTGGTTCCGCAGAAGCAATTCAAGGTTATTGCAGATGTCGATGAAGGGGTATTTACATGCAAGTGCAAACAGTGGGAGCATACAGGCATGTTCTGCACACACATGCTCCGGGCATTTGTTCATGTACAAGTTGAGAAGATACCCGCTGTCTACATCCTAAAGAGGTACACAATGAAAGCGAAGAGCAACGTGCCCTTTGATAGGCGGGATCGAGAGACAACTAGACCAGATGGGGTTCAAGAAAGTTACAGGACAAATATGATGATGATTGAAGCGTTTGGAGTTGCTAGGGCGGCGTGCAAATTGAAGGTAGCGTTTGACAGGGCTATGGCTGTTCTGAAGGGATTGCGTAGTCAAGTAGAGGAGATACCGCGTGACTCTACTGCGACTGTTGACACCAATACGCAAGATGGCATTGCTGGACGAGTTCAAAACGCCGAAATAAGCAGGGAGCCCCCCTCCCCCCCCCCCAAAGTCAAGAATAAAAGGAAGGACCCATGA
More
|
||||||||||
| Protein seq | MGCPPASSPHQQCTPTRQAGDAPSQWMPPCLDDNDIATPTPNRVYNHGPSVPPHMVPTEGMAFPTYDNAYNFYQRYACHAGFDIKKSRTHKAFREVCCTREGKHVSKVTDGDRQRRRPSKKMGCKAFMKLRHNYDGGALSSVVYDVVELQHNHPLTPSPSAVKHMRAHKNRDDTVMQFVDTMQESHVPQSCIMGVLSDLHGGQDNIPFTSRDVENRKVANVRKENANDINKLLEFFNECTLQNPKFYWDAQLDENGVIKNLFWSHASSQVEFADFGDAVTFDTTYKTNIYEMPLAMFVGANHHMQSTLFGCALLRDEKVQSFEWLFNTFNKWHILNRHSDPLNTIFARDAQIEPDMMLCINQTYTPYEFETSWDQFIKSYDLEGCPIMKALYDIREKWVPAFFKKEYCRRMTSTQRSESMNKLVKHKFADHQTALHRFARRMLEVITDRKEKEAAETRACSMSRLYTRAAFRLFEEVLQDSTDFRITQDDNFRNGLKYHHVVDNRVVFLLESMPGEIKDSARFLSLVPQKQFKVIADVDEGVFTCKCKQWEHTGMFCTHMLRAFVHVQVEKIPAVYILKRYTMKAKSNVPFDRRDRETTRPDGVQESYRTNMMMIEAFGVARAACKLKVAFDRAMAVLKGLRSQVEEIPRDSTATVDTNTQDGIAGRVQNAEISREPPSPPPKVKNKRKDP |
||||||||||
| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g41800 | LOC_Os03g41800.1 | Chr03 | 23213785 | 23217778 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGTTGCCCTCCGGCGAGCTCTCCACACCAACAATGTACCCCAACGCGCCAAGCAGGAGATGCTCCCTCTCAATGGATGCCGCCATGCTTGGATGATAACGACATTGCAACCCCCACGCCGAATAGGGTCTACAACCATGGTCCTAGCGTGCCACCGCATATGGTGCCCACCGAAGGCATGGCTTTCCCTACATACGACAACGCATACAACTTCTACCAGAGGTATGCATGTCACGCTGGATTTGACATCAAGAAGAGCCGTACGCACAAAGCGTTTCGCGAGGTGTGTTGTACGAGGGAGGGCAAGCACGTGTCGAAGGTCACCGATGGTGATAGACAACGGAGGAGACCGTCCAAGAAAATGGGGTGCAAGGCTTTTATGAAGCTGAGGCACAACTACGACGGTGGTGCGCTCTCATCGGTGGTGTATGATGTGGTCGAGCTACAGCACAACCACCCTCTAACGCCATCCCCTTCGGCGGTAAAGCACATGCGTGCACATAAGAACCGCGACGACACAGTTATGCAATTTGTGGACACTATGCAAGAAAGTCACGTGCCGCAAAGTTGTATCATGGGCGTTCTATCTGATCTCCATGGAGGCCAAGACAATATCCCTTTCACTTCACGCGACGTTGAGAACAGGAAAGTAGCCAATGTCCGAAAGGAAAATGCGAATGACATCAACAAGTTGTTGGAGTTTTTCAACGAGTGCACGTTGCAAAACCCTAAGTTCTACTGGGACGCCCAGCTTGATGAAAATGGTGTCATTAAGAACTTGTTTTGGAGTCATGCTAGCAGCCAGGTTGAATTTGCTGACTTTGGAGATGCGGTAACGTTTGACACCACATACAAAACTAATATTTACGAAATGCCACTTGCAATGTTTGTTGGTGCAAACCACCATATGCAGAGCACACTCTTCGGATGTGCCTTGCTCAGAGACGAAAAGGTGCAGTCATTTGAGTGGTTATTCAACACCTTCAACAAGTGGCATATCCTCAACCGCCACTCTGACCCATTGAACACCATTTTTGCACGGGACGCTCAAATTGAACCAGACATGATGTTGTGCATCAATCAAACCTACACGCCTTATGAGTTTGAAACATCATGGGATCAATTCATAAAGAGTTATGATTTGGAGGGCTGTCCCATCATGAAAGCTTTATATGATATCAGGGAAAAGTGGGTGCCTGCGTTCTTCAAGAAGGAATACTGCAGGAGGATGACGTCGACGCAGCGGAGCGAGAGCATGAACAAGTTGGTGAAGCACAAGTTTGCTGACCACCAAACCGCGCTGCACCGTTTTGCTCGGAGAATGTTGGAGGTTATAACTGACAGGAAGGAGAAGGAGGCTGCCGAGACAAGAGCATGCTCGATGTCGAGACTTTACACCAGGGCGGCTTTCAGATTGTTCGAGGAGGTGCTTCAGGACAGCACTGACTTCAGGATCACACAAGACGACAATTTCCGCAACGGACTGAAGTATCATCACGTAGTCGACAACAGGGTAGTCTTCCTCCTCGAATCCATGCCCGGCGAGATCAAAGACAGCGCTAGATTCCTCTCTTTGGTTCCGCAGAAGCAATTCAAGGTTATTGCAGATGTCGATGAAGGGGTATTTACATGCAAGTGCAAACAGTGGGAGCATACAGGCATGTTCTGCACACACATGCTCCGGGCATTTGTTCATGTACAAGTTGAGAAGATACCCGCTGTCTACATCCTAAAGAGGTACACAATGAAAGCGAAGAGCAACGTGCCCTTTGATAGGCGGGATCGAGAGACAACTAGACCAGATGGGGTTCAAGAAAGTTACAGGACAAATATGATGATGATTGAAGCGTTTGGAGTTGCTAGGGCGGCGTGCAAATTGAAGGTAGCGTTTGACAGGGCTATGGCTGTTCTGAAGGGATTGCGTAGTCAAGTAGAGGAGATACCGCGTGACTCTACTGCGACTGTTGACACCAATACGCAAGATGGCATTGCTGGACGAGTTCAAAACGCCGAAATAAGCAGGGAGCCCCCCTCCCCCCCCCCCAAAGTCAAGAATAAAAGGAAGGACCCATGA
More
|
|||||||
| Protein seq | MGCPPASSPHQQCTPTRQAGDAPSQWMPPCLDDNDIATPTPNRVYNHGPSVPPHMVPTEGMAFPTYDNAYNFYQRYACHAGFDIKKSRTHKAFREVCCTREGKHVSKVTDGDRQRRRPSKKMGCKAFMKLRHNYDGGALSSVVYDVVELQHNHPLTPSPSAVKHMRAHKNRDDTVMQFVDTMQESHVPQSCIMGVLSDLHGGQDNIPFTSRDVENRKVANVRKENANDINKLLEFFNECTLQNPKFYWDAQLDENGVIKNLFWSHASSQVEFADFGDAVTFDTTYKTNIYEMPLAMFVGANHHMQSTLFGCALLRDEKVQSFEWLFNTFNKWHILNRHSDPLNTIFARDAQIEPDMMLCINQTYTPYEFETSWDQFIKSYDLEGCPIMKALYDIREKWVPAFFKKEYCRRMTSTQRSESMNKLVKHKFADHQTALHRFARRMLEVITDRKEKEAAETRACSMSRLYTRAAFRLFEEVLQDSTDFRITQDDNFRNGLKYHHVVDNRVVFLLESMPGEIKDSARFLSLVPQKQFKVIADVDEGVFTCKCKQWEHTGMFCTHMLRAFVHVQVEKIPAVYILKRYTMKAKSNVPFDRRDRETTRPDGVQESYRTNMMMIEAFGVARAACKLKVAFDRAMAVLKGLRSQVEEIPRDSTATVDTNTQDGIAGRVQNAEISREPPSPPPKVKNKRKDP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0026360 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0026100 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0026160 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0026190 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0025960 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0408300 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0025750 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0413200 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0026000 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0026020 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0026130 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0025880 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0025780 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G025820 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0025810 | RBH | 0.0 | 0.0 | 0.0 |
