Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g39730 | OGI:03062800 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:22103750-22105110 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATAAGGACTTGGATATTTCTCCCATTTCAAGTTGTCCCATTTCAAGTTGTCTGGCCGATGACATCGGATGATAAAACTCATAGGAGACTTGGATATTTCTCCCTTGATGGATGCCGACTGGAAGGATACATGGGCTGATAGCAGTAGTAAAGATTTCTCTGGATTGCTGAAACTTTTCATGATTAATATCCTCGAACCTGAAATCGGCTGGCAGTTCGAAATCCATTGAGTCGGCATAGAAGAACCAAACTCGGGCATCTTTTTGGAATCCGTCATAAAAGCTGAAGAACCAGTCCTTCAGAAGTTCAGCCGATAACTTTGTTCCTGCATCGGCTGGTGTAGATACATATTCTCCATATGACATACATCTGCGATGGGTGCGTTCTTCTCCATCATCTTCCACAATCGGCTCCAACCTTGGAAATTCAGCTTCTGTCACAGATGGCCGATTGACAACTTTCATGACTACCAGGTTCAGCCAGGATTGCAAGAGCCACCATGGTCCACCTGTTCCAACCACTGAGCCGATAATTATCTTGGCCGATGCGTTGTTTAATATCTGGTATAGATAGCCGAGAAGGATTTTGCCTAAGGGAAATTGTTTCTTCGTTACTAGGGCCTCGGCTAAGAATTGCCAGTTGGTTGTAGGACCGCAGCTTGATCCGCAGAAAAGGAATTTTTCCAACCACATCAGCAAAAAAGCTACGTGCTCTCTAGGAGTTACTGGCCCTTTGCCCATATATGCTGTGATATATCCTGACCAACCCCCAATGCTCTTAGTTTTGAACTCAAAAGTGTTCTTGGTGTTCAGGTTCATGGGGTTAGCTGATGAGGTTACATCTAGGCCAGTAAGCATGATAATATCCAGCAGCGTTGGGGTCATCGGCCCTTGGTTGAAAAGAAAAGCATTGAGAGTGTTGGACCAGAAATAAGTTGCAGTAGCCATCAGGGGTTCATCTTTGGCCGAATTTGCTACTGTGAGGGCTAGGGCTTGTTTGCTGGCTGATATCCGCTTATACCATACAGGCCAACTTTTCTCCAGAGAAGGCCAGGATTTGAAGGTGTTTTTCCAATGGCTTGTGTTTGGATTGGCCGACCTAAAAGGGATTCTGTTGGTTTCGGCTATGATAAACTCAGTGGGGTCTAGATTGCCGATTGGACCGAGAAAGTATTGTTGGTCATGCAACAGACTGGGAACCGCAACAAGATTGGAAAGATGCTACAAGAATAGAGAAGAAGAAAACAAGATAAGGTGAGCGAAAACTGGTCTGATGAACGGAAAAGGGGATCTAGCCGATGGGGACTTACCTCAGCATATTCGGCTGATGATGCGGCGGTCGGATTGGTGGAGGTCGACAT
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| CDS seq | ATGTCGACCTCCACCAATCCGACCGCCGCATCATCAGCCGAATATGCTGAGCATCTTTCCAATCTTGTTGCGGTTCCCAGTCTGTTGCATGACCAACAATACTTTCTCGGTCCAATCGGCAATCTAGACCCCACTGAGTTTATCATAGCCGAAACCAACAGAATCCCTTTTAGGTCGGCCAATCCAAACACAAGCCATTGGAAAAACACCTTCAAATCCTGGCCTTCTCTGGAGAAAAGTTGGCCTGTATGGTATAAGCGGATATCAGCCAGCAAACAAGCCCTAGCCCTCACAGTAGCAAATTCGGCCAAAGATGAACCCCTGATGGCTACTGCAACTTATTTCTGGTCCAACACTCTCAATGCTTTTCTTTTCAACCAAGGGCCGATGACCCCAACGCTGCTGGATATTATCATGCTTACTGGCCTAGATGTAACCTCATCAGCTAACCCCATGAACCTGAACACCAAGAACACTTTTGAGTTCAAAACTAAGAGCATTGGGGGTTGGTCAGGATATATCACAGCATATATGGGCAAAGGGCCAGTAACTCCTAGAGAGCACGTAGCTTTTTTGCTGATGTGGTTGGAAAAATTCCTTTTCTGCGGATCAAGCTGCGGTCCTACAACCAACTGGCAATTCTTAGCCGAGGCCCTAGTAACGAAGAAACAATTTCCCTTAGGCAAAATCCTTCTCGGCTATCTATACCAGATATTAAACAACGCATCGGCCAAGATAATTATCGGCTCAGTGGTTGGAACAGGTGGACCATGGTGGCTCTTGCAATCCTGGCTGAACCTGGTAGTCATGAAAGTTGTCAATCGGCCATCTGTGACAGAAGCTGAATTTCCAAGGTTGGAGCCGATTGTGGAAGATGATGGAGAAGAACGCACCCATCGCAGATGTATGTCATATGGAGAATATGTATCTACACCAGCCGATGCAGGAACAAAGTTATCGGCTGAACTTCTGAAGGACTGGTTCTTCAGCTTTTATGACGGATTCCAAAAAGATGCCCGAGTTTGGTTCTTCTATGCCGACTCAATGGATTTCGAACTGCCAGCCGATTTCAGGTTCGAGGATATTAATCATGAAAAGTTTCAGCAATCCAGAGAAATCTTTACTACTGCTATCAGCCCATGTATCCTTCCAGTCGGCATCCATCAAGGGAGAAATATCCAAGTCTCCTATGAGTTTTATCATCCGATGTCATCGGCCAGACAACTTGAAATGGGACAACTTGAAATGGGAGAAATATCCAAGTCCTTATAG
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| Protein seq | MSTSTNPTAASSAEYAEHLSNLVAVPSLLHDQQYFLGPIGNLDPTEFIIAETNRIPFRSANPNTSHWKNTFKSWPSLEKSWPVWYKRISASKQALALTVANSAKDEPLMATATYFWSNTLNAFLFNQGPMTPTLLDIIMLTGLDVTSSANPMNLNTKNTFEFKTKSIGGWSGYITAYMGKGPVTPREHVAFLLMWLEKFLFCGSSCGPTTNWQFLAEALVTKKQFPLGKILLGYLYQILNNASAKIIIGSVVGTGGPWWLLQSWLNLVVMKVVNRPSVTEAEFPRLEPIVEDDGEERTHRRCMSYGEYVSTPADAGTKLSAELLKDWFFSFYDGFQKDARVWFFYADSMDFELPADFRFEDINHEKFQQSREIFTTAISPCILPVGIHQGRNIQVSYEFYHPMSSARQLEMGQLEMGEISKSL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g39730 | LOC_Os03g39730.1 | Chr03 | 22103750 | 22105110 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCGACCTCCACCAATCCGACCGCCGCATCATCAGCCGAATATGCTGAGCATCTTTCCAATCTTGTTGCGGTTCCCAGTCTGTTGCATGACCAACAATACTTTCTCGGTCCAATCGGCAATCTAGACCCCACTGAGTTTATCATAGCCGAAACCAACAGAATCCCTTTTAGGTCGGCCAATCCAAACACAAGCCATTGGAAAAACACCTTCAAATCCTGGCCTTCTCTGGAGAAAAGTTGGCCTGTATGGTATAAGCGGATATCAGCCAGCAAACAAGCCCTAGCCCTCACAGTAGCAAATTCGGCCAAAGATGAACCCCTGATGGCTACTGCAACTTATTTCTGGTCCAACACTCTCAATGCTTTTCTTTTCAACCAAGGGCCGATGACCCCAACGCTGCTGGATATTATCATGCTTACTGGCCTAGATGTAACCTCATCAGCTAACCCCATGAACCTGAACACCAAGAACACTTTTGAGTTCAAAACTAAGAGCATTGGGGGTTGGTCAGGATATATCACAGCATATATGGGCAAAGGGCCAGTAACTCCTAGAGAGCACGTAGCTTTTTTGCTGATGTGGTTGGAAAAATTCCTTTTCTGCGGATCAAGCTGCGGTCCTACAACCAACTGGCAATTCTTAGCCGAGGCCCTAGTAACGAAGAAACAATTTCCCTTAGGCAAAATCCTTCTCGGCTATCTATACCAGATATTAAACAACGCATCGGCCAAGATAATTATCGGCTCAGTGGTTGGAACAGGTGGACCATGGTGGCTCTTGCAATCCTGGCTGAACCTGGTAGTCATGAAAGTTGTCAATCGGCCATCTGTGACAGAAGCTGAATTTCCAAGGTTGGAGCCGATTGTGGAAGATGATGGAGAAGAACGCACCCATCGCAGATGTATGTCATATGGAGAATATGTATCTACACCAGCCGATGCAGGAACAAAGTTATCGGCTGAACTTCTGAAGGACTGGTTCTTCAGCTTTTATGACGGATTCCAAAAAGATGCCCGAGTTTGGTTCTTCTATGCCGACTCAATGGATTTCGAACTGCCAGCCGATTTCAGGTTCGAGGATATTAATCATGAAAAGTTTCAGCAATCCAGAGAAATCTTTACTACTGCTATCAGCCCATGTATCCTTCCAGTCGGCATCCATCAAGGGAGAAATATCCAAGTCTCCTATGAGTTTTATCATCCGATGTCATCGGCCAGACAACTTGAAATGGGACAACTTGAAATGGGAGAAATATCCAAGTCCTTATAG
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| Protein seq | MSTSTNPTAASSAEYAEHLSNLVAVPSLLHDQQYFLGPIGNLDPTEFIIAETNRIPFRSANPNTSHWKNTFKSWPSLEKSWPVWYKRISASKQALALTVANSAKDEPLMATATYFWSNTLNAFLFNQGPMTPTLLDIIMLTGLDVTSSANPMNLNTKNTFEFKTKSIGGWSGYITAYMGKGPVTPREHVAFLLMWLEKFLFCGSSCGPTTNWQFLAEALVTKKQFPLGKILLGYLYQILNNASAKIIIGSVVGTGGPWWLLQSWLNLVVMKVVNRPSVTEAEFPRLEPIVEDDGEERTHRRCMSYGEYVSTPADAGTKLSAELLKDWFFSFYDGFQKDARVWFFYADSMDFELPADFRFEDINHEKFQQSREIFTTAISPCILPVGIHQGRNIQVSYEFYHPMSSARQLEMGQLEMGEISKSL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g36730 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0039200 | SBH | 5.079338 | 6.218466 | 14.410067 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0346300 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0038960 | SBH | 0.280326 | 0.394012 | 1.130382 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0379300 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0039520 | SBH | 0.149844 | 0.287275 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0039480 | SBH | 0.576512 | 8.686745 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0039140 | SBH | 2.467940 | 9.695338 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0039180 | SBH | 0.883437 | 0.481239 | 0.979332 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G039000 | SBH | 0.655471 | 1.527940 | 2.187909 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0038750 | SBH | 1.901676 | 8.337953 | 5.300770 |
