Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g39220 | OGI:03061630 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:21782182-21783161 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTTCTTTAGTAGCCCTGATCAGTTTACTAGCCCGCCGTAATTCCATTGCGCGTACAAGATCTAGATTAACAGCTGACAAAAAAAAAAGCACATGGTAATCTACCTACTAACTAATAATGACAAATTAAGTGGCGATCGACATGAGCTCGCTAGTCTTGTGCGGCACTGTCTCCTGTGCGGCGCCTCTGTCGTGGCGGCTCCTGATCCTGCTCCTTCTCCGTCTCCGGCGTCGGCCTCTTATGCACGACGACGACGGGACTTGCTGCTCGGTTGGCATCGGCTAACAAGACCGCAGAGAACGCTTGTGATTCCGCAATCTCCGCCTCGGCCGTCGCGGCGTGCTTCTGCAGCGCCTGCACGATCTCCCCCTCCCCCGCGAAGGCGGCGGCGCCACGCGTGAGCTTCTCCTTCAACACGGTCATCTTCTCCACCACGGCGTCCTCGAACTTGATCGCGCTGGCCAACAACCCGGCCTTGCGGCTACGGACGGCATCACCGCCGGAGTCCTGCAGGACCAGTGATTTGGTGGACACGCGCATGGCGGTGATCAGCGCCGCAAGCTCCGGAATGACGGGGTGGTCTCTCGCCGCCATGCACCTGAGCTCCTTCTCCAGCAAGCGCCGCGCGGCGGAGGCGATCTCCACCGCCTCCGCGCGGCGCGCGTCGGCCCACGCGACGTGCTTCCTGAGCACCGCCTCCTCGGGCCTCCCTGTCCCGGCGAACACGGCCAGAGCCCTCCTGAGATCGAGCACATAGGACGCCATGTTATCCGCCGCCGACTGGGCGGAGATCACTGCACCTTCCGCCCATCCCACCTGCTCCGGCGAGGGAGGGTCGGGGTCCACAAGGTACTCGGTGGCTTCAGACAGCGCTGTCGCCGAGATTTCCTCGTGCTCTCGGTCCTCGGCATCGTCCTCCATCAGCTCGTCGATGAGCTCCTGGAGGTCATCGTCGACGGCGGGCGGCATGTCGTCCGCCAT
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| CDS seq | ATGGCGGACGACATGCCGCCCGCCGTCGACGATGACCTCCAGGAGCTCATCGACGAGCTGATGGAGGACGATGCCGAGGACCGAGAGCACGAGGAAATCTCGGCGACAGCGCTGTCTGAAGCCACCGAGTACCTTGTGGACCCCGACCCTCCCTCGCCGGAGCAGGTGGGATGGGCGGAAGGTGCAGTGATCTCCGCCCAGTCGGCGGCGGATAACATGGCGTCCTATGTGCTCGATCTCAGGAGGGCTCTGGCCGTGTTCGCCGGGACAGGGAGGCCCGAGGAGGCGGTGCTCAGGAAGCACGTCGCGTGGGCCGACGCGCGCCGCGCGGAGGCGGTGGAGATCGCCTCCGCCGCGCGGCGCTTGCTGGAGAAGGAGCTCAGGTGCATGGCGGCGAGAGACCACCCCGTCATTCCGGAGCTTGCGGCGCTGATCACCGCCATGCGCGTGTCCACCAAATCACTGGTCCTGCAGGACTCCGGCGGTGATGCCGTCCGTAGCCGCAAGGCCGGGTTGTTGGCCAGCGCGATCAAGTTCGAGGACGCCGTGGTGGAGAAGATGACCGTGTTGAAGGAGAAGCTCACGCGTGGCGCCGCCGCCTTCGCGGGGGAGGGGGAGATCGTGCAGGCGCTGCAGAAGCACGCCGCGACGGCCGAGGCGGAGATTGCGGAATCACAAGCGTTCTCTGCGGTCTTGTTAGCCGATGCCAACCGAGCAGCAAGTCCCGTCGTCGTCGTGCATAAGAGGCCGACGCCGGAGACGGAGAAGGAGCAGGATCAGGAGCCGCCACGACAGAGGCGCCGCACAGGAGACAGTGCCGCACAAGACTAG
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| Protein seq | MADDMPPAVDDDLQELIDELMEDDAEDREHEEISATALSEATEYLVDPDPPSPEQVGWAEGAVISAQSAADNMASYVLDLRRALAVFAGTGRPEEAVLRKHVAWADARRAEAVEIASAARRLLEKELRCMAARDHPVIPELAALITAMRVSTKSLVLQDSGGDAVRSRKAGLLASAIKFEDAVVEKMTVLKEKLTRGAAAFAGEGEIVQALQKHAATAEAEIAESQAFSAVLLADANRAASPVVVVHKRPTPETEKEQDQEPPRQRRRTGDSAAQD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g39220 | LOC_Os03g39220.1 | Chr03 | 21782182 | 21783161 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGGACGACATGCCGCCCGCCGTCGACGATGACCTCCAGGAGCTCATCGACGAGCTGATGGAGGACGATGCCGAGGACCGAGAGCACGAGGAAATCTCGGCGACAGCGCTGTCTGAAGCCACCGAGTACCTTGTGGACCCCGACCCTCCCTCGCCGGAGCAGGTGGGATGGGCGGAAGGTGCAGTGATCTCCGCCCAGTCGGCGGCGGATAACATGGCGTCCTATGTGCTCGATCTCAGGAGGGCTCTGGCCGTGTTCGCCGGGACAGGGAGGCCCGAGGAGGCGGTGCTCAGGAAGCACGTCGCGTGGGCCGACGCGCGCCGCGCGGAGGCGGTGGAGATCGCCTCCGCCGCGCGGCGCTTGCTGGAGAAGGAGCTCAGGTGCATGGCGGCGAGAGACCACCCCGTCATTCCGGAGCTTGCGGCGCTGATCACCGCCATGCGCGTGTCCACCAAATCACTGGTCCTGCAGGACTCCGGCGGTGATGCCGTCCGTAGCCGCAAGGCCGGGTTGTTGGCCAGCGCGATCAAGTTCGAGGACGCCGTGGTGGAGAAGATGACCGTGTTGAAGGAGAAGCTCACGCGTGGCGCCGCCGCCTTCGCGGGGGAGGGGGAGATCGTGCAGGCGCTGCAGAAGCACGCCGCGACGGCCGAGGCGGAGATTGCGGAATCACAAGCGTTCTCTGCGGTCTTGTTAGCCGATGCCAACCGAGCAGCAAGTCCCGTCGTCGTCGTGCATAAGAGGCCGACGCCGGAGACGGAGAAGGAGCAGGATCAGGAGCCGCCACGACAGAGGCGCCGCACAGGAGACAGTGCCGCACAAGACTAG
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| Protein seq | MADDMPPAVDDDLQELIDELMEDDAEDREHEEISATALSEATEYLVDPDPPSPEQVGWAEGAVISAQSAADNMASYVLDLRRALAVFAGTGRPEEAVLRKHVAWADARRAEAVEIASAARRLLEKELRCMAARDHPVIPELAALITAMRVSTKSLVLQDSGGDAVRSRKAGLLASAIKFEDAVVEKMTVLKEKLTRGAAAFAGEGEIVQALQKHAATAEAEIAESQAFSAVLLADANRAASPVVVVHKRPTPETEKEQDQEPPRQRRRTGDSAAQD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.168472 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0589100 | RBH | 0.293795 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g39240 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0589100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0024980 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0024770 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0024830 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0024880 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0024590 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0377600 | RBH | 0.044908 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0024370 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0379000 | SBH | 0.0424495 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0024660 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0024690 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0024770 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0024540 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0024430 | RBH | 0.0 | 1.668676 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G024510 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0024480 | RBH | 0.0 | 0.0 | 0.816309 |
