Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g38580 | OGI:03060400 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:21409003-21411259 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATATACTGATTTGTTATTTCCTAAATTTGGAACATACATGTCGAATGAAAGTAGCAAAACAACATGAATATCATTTACAACTCTACTCATTAATATTTTTATGTGACATGCATTGAACATGGTAAAAAAAAAAGGTATATTGTGCTCCTATGTAATGAATGGAAATTTTGTTTTGCGTGAAAGCTCAACACATACCTAAACAAATATGGTGTCATTAGAGCTCTTAAATCATTGCTAGGATGCGAAATTGCAGAATAGCTTATTGATCCATTACCAGTAATCACCACAGGAACAAAAACCACTGTTGAAATGGTGAAACCTTTGATTGTCTCTCAATATTATTTCTCTTCCTGTAACAAGGGAGAAGTATTTGTACGCACAATGACAATCACCACAAACACGAAGGTTCTTCATGATGCGGAGAGTGCCTCCAGAAGGAGCAGCCAAGTCCCCAAAAGCAAATGCCAATTTTTCACAGTGATAATACAATGATTCTTCCTTTCTATCCCTTTGTATATTGTGTGCAGCAAAACTGATATCAGGCACATAGCCTGCAACCTTGATAGTACTTATTAATCTATCTAAATTCCTATATATCTCTCTGGAGATGGGGTGTGATCGGTCATCAACACCAAATCTATATGTTCTCTGACCCATCTCAATCCAGCTAAATGCATCATCCTTATAAACACCTCTCTCACCCATCAGACTTCTAACCTTTTCTGCTTCTGTCCACCTTCCTAACCTTGCATAAATATTACCAAGAAGTATATAATTTGTGGCTTCATAGGGTTCCATCTCAAACAGCATCTCTGCAATGCGCTTGCCAGTTTCAATGTCACGGTGCTTGCTGCATGCACCAAGAACAATCCTCCATAACGGTGCTTCAGCTTCAAAGGGCATTTCATTGATTGTTTTCATGGCTTTGCCAATCTCTCCTGATCGAGCCAGCATGTCAACAACACAGGCATAATGTTGATACATTGGTTTTATGCCTTCAATATCCACCATGGAATTGAACATCTGCAGGCCTTCATGAACAAGACCAGCATGGTTGAAAGAAGAGATCAGATTTAACAAGGTTACCTCGTCAGGCATAAGACCAGCAAACTTCATCTGCCTGAAATGCTCAAGTGCTTCTTTCGGATATCCGTGCTGTCCAAGAGCTGAAATCATTGAATTGTAAGAAATTACATTCACGCAATCATTTGAAGAGAATACTTTCTGTGCGTCATTAATGCATCCGCAATCCGAGTACATGGTCAAAAGCGCGTTAAACATTGCGGCATCCTTTTCAGTATTGCTCTTCAGGCTGTGGGCATGAACTTGCTTGCCCATCTCCAGTATTCCCATTCTTCCACAGACAGAAAACACGGTCGAGTAGACAAACTGAGTTGGCTTAATGTCTTGGCACAACATATTGAAGAAAATCAACAGAGCACCCTCTTCCTCCTCGCAGTTCACATACGCAGAGATCATGGATGACCAGACGATTGGATCGGAAGAACCCACTTGATCAAAGGCGACCTTTGCATCCTCCAATGTCCTTCTAGCCGCATACAAGGAAACCAGGGAAGCCCCCACGAAAGGGTCTCTCTCCAGCCCTGCTTTGATGACATGCGCATGCAGGGCTCCCCCGAGCTCCAGCGTGCGGCCAGAGCCACCCTCTCGGCCGATGCCAGAAAGCAACGCCGGGAACGTATACCTGTCCGGAGCAACATGGCTGCCCTCCCTCTTCATGTCTCGGAACAGCAGAATGGCCTCCTCCCTGCGCCCCGCCTGCGCGTACCCCTTGATGAGCGCGTTCCAGGTGACGGCGTTCCTGCGCGGCATTCCGTCGAACACCTTCCGCGCGAGGTCGGGCTCCCGGCACGACGCGTAGAAGCTGAGCACGGCGGTCGCCAGGATGGTGCTGTCGTCGCCGCCGAGGAAGCCGCGCACGACGGCCTGCGCGTGGAGCTGCGCGCCCAGGCCCAGGGAGGAGGGCCGTCGAGGCGGGGAGGCGGACGAGGAGGCGGCCTTGAGGAGCGCGGAGAAGGCGCGGGGCGTGGGGTCGTCGGCGAGGAGGTCCCGGGCGGCGGCTGGCAGGGTGGACCGCGCGGAGGCGGTGCGCCGGTGCCGGCTTGGTGGTCGGCTCGTGCTCGGGCTGCGGCTCCGGCGAGGGGCAGCGTGGAGCGGGTCGCGGGAAGCGCATGGTGGTGTGGGTGTGGGAGGAGGAGGGAGAAGGAGCGGCATTATTGATCTTTTTTTACATCTC
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| CDS seq | ATGCCGCTCCTTCTCCCTCCTCCTCCCACACCCACACCACCATGCGCTTCCCGCGACCCGCTCCACGCTGCCCCTCGCCGGAGCCGCAGCCCGAGCACGAGCCGACCACCAAGCCGGCACCGGCGCACCGCCTCCGCGCGGTCCACCCTGCCAGCCGCCGCCCGGGACCTCCTCGCCGACGACCCCACGCCCCGCGCCTTCTCCGCGCTCCTCAAGGCCGCCTCCTCGTCCGCCTCCCCGCCTCGACGGCCCTCCTCCCTGGGCCTGGGCGCGCAGCTCCACGCGCAGGCCGTCGTGCGCGGCTTCCTCGGCGGCGACGACAGCACCATCCTGGCGACCGCCGTGCTCAGCTTCTACGCGTCGTGCCGGGAGCCCGACCTCGCGCGGAAGGTGTTCGACGGAATGCCGCGCAGGAACGCCGTCACCTGGAACGCGCTCATCAAGGGGTACGCGCAGGCGGGGCGCAGGGAGGAGGCCATTCTGCTGTTCCGAGACATGAAGAGGGAGGGCAGCCATGTTGCTCCGGACAGGTATACGTTCCCGGCGTTGCTTTCTGGCATCGGCCGAGAGGGTGGCTCTGGCCGCACGCTGGAGCTCGGGGGAGCCCTGCATGCGCATGTCATCAAAGCAGGGCTGGAGAGAGACCCTTTCGTGGGGGCTTCCCTGGTTTCCTTGTATGCGGCTAGAAGGACATTGGAGGATGCAAAGGTCGCCTTTGATCAAGTGGGTTCTTCCGATCCAATCGTCTGGTCATCCATGATCTCTGCGTATGTGAACTGCGAGGAGGAAGAGGGTGCTCTGTTGATTTTCTTCAATATGTTGTGCCAAGACATTAAGCCAACTCAGTTTGTCTACTCGACCGTGTTTTCTGTCTGTGGAAGAATGGGAATACTGGAGATGGGCAAGCAAGTTCATGCCCACAGCCTGAAGAGCAATACTGAAAAGGATGCCGCAATGTTTAACGCGCTTTTGACCATGTACTCGGATTGCGGATGCATTAATGACGCACAGAAAGTATTCTCTTCAAATGATTGCGTGAATGTAATTTCTTACAATTCAATGATTTCAGCTCTTGGACAGCACGGATATCCGAAAGAAGCACTTGAGCATTTCAGGCAGATGAAGTTTGCTGGTCTTATGCCTGACGAGGTAACCTTGTTAAATCTGATCTCTTCTTTCAACCATGCTGGTCTTGTTCATGAAGGCCTGCAGATGTTCAATTCCATGGTGGATATTGAAGGCATAAAACCAATGTATCAACATTATGCCTGTGTTGTTGACATGCTGGCTCGATCAGGAGAGATTGGCAAAGCCATGAAAACAATCAATGAAATGCCCTTTGAAGCTGAAGCACCGTTATGGAGGATTGTTCTTGGTGCATGCAGCAAGCACCGTGACATTGAAACTGGCAAGCGCATTGCAGAGATGCTGTTTGAGATGGAACCCTATGAAGCCACAAATTATATACTTCTTGGTAATATTTATGCAAGGTTAGGAAGGTGGACAGAAGCAGAAAAGGTTAGAAGTCTGATGGGTGAGAGAGGTGTTTATAAGGATGATGCATTTAGCTGGATTGAGATGGGTCAGAGAACATATAGATTTGGTGTTGATGACCGATCACACCCCATCTCCAGAGAGATATATAGGAATTTAGATAGATTAATAAGTACTATCAAGGTTGCAGGCTATGTGCCTGATATCAGTTTTGCTGCACACAATATACAAAGGGATAGAAAGGAAGAATCATTGTATTATCACTGTGAAAAATTGGCATTTGCTTTTGGGGACTTGGCTGCTCCTTCTGGAGGCACTCTCCGCATCATGAAGAACCTTCGTGTTTGTGGTGATTGTCATTGTGCGTACAAATACTTCTCCCTTGTTACAGGAAGAGAAATAATATTGAGAGACAATCAAAGGTTTCACCATTTCAACAGTGGTTTTTGTTCCTGTGGTGATTACTGGTAA
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| Protein seq | MPLLLPPPPTPTPPCASRDPLHAAPRRSRSPSTSRPPSRHRRTASARSTLPAAARDLLADDPTPRAFSALLKAASSSASPPRRPSSLGLGAQLHAQAVVRGFLGGDDSTILATAVLSFYASCREPDLARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGSHVAPDRYTFPALLSGIGREGGSGRTLELGGALHAHVIKAGLERDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPIVWSSMISAYVNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHSLKSNTEKDAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISALGQHGYPKEALEHFRQMKFAGLMPDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLARSGEIGKAMKTINEMPFEAEAPLWRIVLGACSKHRDIETGKRIAEMLFEMEPYEATNYILLGNIYARLGRWTEAEKVRSLMGERGVYKDDAFSWIEMGQRTYRFGVDDRSHPISREIYRNLDRLISTIKVAGYVPDISFAAHNIQRDRKEESLYYHCEKLAFAFGDLAAPSGGTLRIMKNLRVCGDCHCAYKYFSLVTGREIILRDNQRFHHFNSGFCSCGDYW |
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| Function | Pentatricopeptide repeat-containing protein At3g24000, mitochondrial [UniProtKB/Swiss-Prot:Q9LIQ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g38580 | LOC_Os03g38580.1 | Chr03 | 21409003 | 21411259 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCGCTCCTTCTCCCTCCTCCTCCCACACCCACACCACCATGCGCTTCCCGCGACCCGCTCCACGCTGCCCCTCGCCGGAGCCGCAGCCCGAGCACGAGCCGACCACCAAGCCGGCACCGGCGCACCGCCTCCGCGCGGTCCACCCTGCCAGCCGCCGCCCGGGACCTCCTCGCCGACGACCCCACGCCCCGCGCCTTCTCCGCGCTCCTCAAGGCCGCCTCCTCGTCCGCCTCCCCGCCTCGACGGCCCTCCTCCCTGGGCCTGGGCGCGCAGCTCCACGCGCAGGCCGTCGTGCGCGGCTTCCTCGGCGGCGACGACAGCACCATCCTGGCGACCGCCGTGCTCAGCTTCTACGCGTCGTGCCGGGAGCCCGACCTCGCGCGGAAGGTGTTCGACGGAATGCCGCGCAGGAACGCCGTCACCTGGAACGCGCTCATCAAGGGGTACGCGCAGGCGGGGCGCAGGGAGGAGGCCATTCTGCTGTTCCGAGACATGAAGAGGGAGGGCAGCCATGTTGCTCCGGACAGGTATACGTTCCCGGCGTTGCTTTCTGGCATCGGCCGAGAGGGTGGCTCTGGCCGCACGCTGGAGCTCGGGGGAGCCCTGCATGCGCATGTCATCAAAGCAGGGCTGGAGAGAGACCCTTTCGTGGGGGCTTCCCTGGTTTCCTTGTATGCGGCTAGAAGGACATTGGAGGATGCAAAGGTCGCCTTTGATCAAGTGGGTTCTTCCGATCCAATCGTCTGGTCATCCATGATCTCTGCGTATGTGAACTGCGAGGAGGAAGAGGGTGCTCTGTTGATTTTCTTCAATATGTTGTGCCAAGACATTAAGCCAACTCAGTTTGTCTACTCGACCGTGTTTTCTGTCTGTGGAAGAATGGGAATACTGGAGATGGGCAAGCAAGTTCATGCCCACAGCCTGAAGAGCAATACTGAAAAGGATGCCGCAATGTTTAACGCGCTTTTGACCATGTACTCGGATTGCGGATGCATTAATGACGCACAGAAAGTATTCTCTTCAAATGATTGCGTGAATGTAATTTCTTACAATTCAATGATTTCAGCTCTTGGACAGCACGGATATCCGAAAGAAGCACTTGAGCATTTCAGGCAGATGAAGTTTGCTGGTCTTATGCCTGACGAGGTAACCTTGTTAAATCTGATCTCTTCTTTCAACCATGCTGGTCTTGTTCATGAAGGCCTGCAGATGTTCAATTCCATGGTGGATATTGAAGGCATAAAACCAATGTATCAACATTATGCCTGTGTTGTTGACATGCTGGCTCGATCAGGAGAGATTGGCAAAGCCATGAAAACAATCAATGAAATGCCCTTTGAAGCTGAAGCACCGTTATGGAGGATTGTTCTTGGTGCATGCAGCAAGCACCGTGACATTGAAACTGGCAAGCGCATTGCAGAGATGCTGTTTGAGATGGAACCCTATGAAGCCACAAATTATATACTTCTTGGTAATATTTATGCAAGGTTAGGAAGGTGGACAGAAGCAGAAAAGGTTAGAAGTCTGATGGGTGAGAGAGGTGTTTATAAGGATGATGCATTTAGCTGGATTGAGATGGGTCAGAGAACATATAGATTTGGTGTTGATGACCGATCACACCCCATCTCCAGAGAGATATATAGGAATTTAGATAGATTAATAAGTACTATCAAGGTTGCAGGCTATGTGCCTGATATCAGTTTTGCTGCACACAATATACAAAGGGATAGAAAGGAAGAATCATTGTATTATCACTGTGAAAAATTGGCATTTGCTTTTGGGGACTTGGCTGCTCCTTCTGGAGGCACTCTCCGCATCATGAAGAACCTTCGTGTTTGTGGTGATTGTCATTGTGCGTACAAATACTTCTCCCTTGTTACAGGAAGAGAAATAATATTGAGAGACAATCAAAGGTTTCACCATTTCAACAGTGGTTTTTGTTCCTGTGGTGATTACTGGTAA
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| Protein seq | MPLLLPPPPTPTPPCASRDPLHAAPRRSRSPSTSRPPSRHRRTASARSTLPAAARDLLADDPTPRAFSALLKAASSSASPPRRPSSLGLGAQLHAQAVVRGFLGGDDSTILATAVLSFYASCREPDLARKVFDGMPRRNAVTWNALIKGYAQAGRREEAILLFRDMKREGSHVAPDRYTFPALLSGIGREGGSGRTLELGGALHAHVIKAGLERDPFVGASLVSLYAARRTLEDAKVAFDQVGSSDPIVWSSMISAYVNCEEEEGALLIFFNMLCQDIKPTQFVYSTVFSVCGRMGILEMGKQVHAHSLKSNTEKDAAMFNALLTMYSDCGCINDAQKVFSSNDCVNVISYNSMISALGQHGYPKEALEHFRQMKFAGLMPDEVTLLNLISSFNHAGLVHEGLQMFNSMVDIEGIKPMYQHYACVVDMLARSGEIGKAMKTINEMPFEAEAPLWRIVLGACSKHRDIETGKRIAEMLFEMEPYEATNYILLGNIYARLGRWTEAEKVRSLMGERGVYKDDAFSWIEMGQRTYRFGVDDRSHPISREIYRNLDRLISTIKVAGYVPDISFAAHNIQRDRKEESLYYHCEKLAFAFGDLAAPSGGTLRIMKNLRVCGDCHCAYKYFSLVTGREIILRDNQRFHHFNSGFCSCGDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.830099 | 0.669775 | 0.541083 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0582100 | RBH | 1.199582 | 0.989585 | 2.175800 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0582100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0024530 | RBH | 0.339438 | 0.0 | 0.849405 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0024340 | RBH | 0.028740 | 0.0 | 0.570045 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0024400 | RBH | 0.642262 | 1.134589 | 1.307617 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0024430 | RBH | 0.063815 | 0.026392 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0024130 | RBH | 3.564646 | 2.335276 | 0.509811 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0369300 | RBH | 1.9461755 | 2.8839535 | 2.475201 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0023920 | RBH | 0.128269 | 0.126673 | 0.108740 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0372000 | RBH | 2.0648375 | 3.3802345 | 6.9364235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0024210 | RBH | 0.042786 | 0.054602 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0024250 | RBH | 0.409821 | 4.086164 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0024320 | RBH | 2.655244 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0024090 | RBH | 0.166208 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0023980 | RBH | 0.239539 | 1.250375 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G024050 | RBH | 0.383111 | 0.0 | 0.159768 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0024010 | RBH | 2.345267 | 1.750390 | 1.412454 |
