Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g33600 | OGI:03051970 | 6/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:19206277-19208398 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAAATTCTTGGGGGTAAGAGGATCCATCTCAAGAGACGTGGCTTAGCATATTTCTTAGTGAGCAGGTATTTCAGAGCAGCATGATTAGTGTAATTGATTACTTTGGCACCCACTAAGTAAGGTATGAACTTATCGATAGCAAAAACAACCGCAAGAAACTCTTTTTCAGTAGTTGCATAATTCAACTGAGCTCCGGTTAGAGTTTTGCTAGCGTAGTAGATTGCATGATGCTTTTTATCCTTGGTTTGGCCCAAAACCGCACCAACAACAAAGTCGTTGGCATCACACATTATTTTGAAAGGAAGCGTCCAATCAAGAGGTTGAATGATTGGCGCGGAAACGAGAGCCTTTTTTAGAGTTTCAAAGTATCTAAGGCACACATCGTTAAAATCAATGGGGGCATCCTTAGCCAACAAGTTTGTTAGCGGTCTGGTGATTGTAGAGAAGTCCTTGATGAACCTTCTATAAAAGCCAGTGTGATCAAGGATGCTACTGATTCCTTTGATATTGACGAGAGGTGGAAGTTGATCTATGACTTCGATTTTTGCACGATCAACTTTGATACCTCTCTCAGAGACTCGATGGCCAAGAACAATCCCTTCGCGGACCATAAAGTGACAGTTGTCCCAATTAAATACCAGGTCCTTTTCTTGGCATTGCTGCAAGGACTTGTCCAAATTTTGGAGAGATCGAAGGTCTTCCCATAGACTGAGAAGTCATCCATGAAGACTTCCACGATTTCTTCGATCATGTCTGAAAAGATGGACATCATACACCTCTGAAAAGGGGCGGGAGCGTTGCATAGTCCAAATGACATCCTACGATAAGCATAGGTTCCATACGAGCATGTGAACGTGGTCTTGCTTTGGTCTTCGGGATGAATGGGAATTTAATGATACCCGGAATACCCATCAAGGAAACAGAAGAAGGAGTGATATGCTATCCGTCCCAACATTTCATCGATGAAGGGTAGTGGAAAATGGTCCTTCTTTGTGGCCTCGTTAAGTTTCTAGTAGTCAATACATATTGTTGGAGGCATGCCATGAAGCCCTTCGGTCGGACCTGCCGAAACCATAGTACCAGCAAGGATTCAAGCCGAAGACGTCAAGACCATTTAGGCGAAGCCCTATGGCGAAAGCCATAAACGAAGATGGCAAAGGCTGGAAAGCTGCGTCGGTACTCCGAAATTAAAGGCATCTCGGGCGAACTACAAAGACTTCGCCATGACGAGTTCGGCATCAAGGAGGCCTAACAGGCCGCCCCCGGCTTTTTAGGCCTGTTCGCCATAGACCAGGCCCAGCCTATCAGCCCATTAAAGGCCCATATGTGCAAATGACACTGCGTACCCATGTAAATGTCCCTTTCATAAGGGCAACCATGTAAAATCCCCTGTAACCCTAAACCTTAGAAGGTGCAAGCTTGTGCTAAGGCTATAGATAGACCTCTAGAGCCATGTAATGGGGGGATCCCTAAAAAATTTTACGAATCAATACAATTGCTTTTACATTCCAACTACTGTTAAGAGAACCACGCCTTTTGACGTGGCATAGTTTTCCATTCGACAATAGCTGGCGCCGTCCGTGGGGATACCCATACCGAAAGGGCGAAATGGGACCCTTTTCGCCACACGCCAAGCCCTTTGCCAAAGTACCAATAAGGTACGGCGTCAAGGGCTGCAGGCGAAGAGGTTTCGCCACACACACGCCCTTCGCCACAGTACCAAAAAGGTACGGCATAAAGGGCTGTGGGCGAACAGGTTTCGCCCACCCACACCCTTCACCATAGTGCCAATAAGGTATGGTGTCAAGGGCTGCGGGCAAACAGGTTTCGCCCACCCACGCCCTTCGCCATAGTACCAATAAGGTATGACGTCAAGGGTTACGGGCGAACAGGTTTCGCCCACCCACGCCCTTCGATATAGTGCCAATAAGGTATGGCGTCAAGGGCTGTGGGCGAACAGGTTCCACCCACGCCCTTCGCCATAGTGCCAATAAGGTTCGGCGTCAAGGGCTGCGGGCGAACAGGTTTTGCCCACCCACGCCCATCGCCATAGTGCCAATAAGGTACCGCGTCAAGGGCTACGGGCGAACAGGTTTCGCCACACGCCACGCCCTTCGCCAT
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| CDS seq | ATGGCGAAGGGCGTGGCGTGTGGCGAAACCTGTTCGCCCGTAGCCCTTGACGCGGTACCTTATTGGCACTATGGCGATGGGCGTGGGTGGGCAAAACCTGTTCGCCCGCAGCCCTTGACGCCGAACCTTATTGGCACTATGGCGAAGGGCGTGGGTGGAACCTGTTCGCCCACAGCCCTTGACGCCATACCTTATTGGCACTATATCGAAGGGCGTGGTCTATGGGAAGACCTTCGATCTCTCCAAAATTTGGACAAGTCCTTGCAGCAATGCCAAGAAAAGGACCTGGTATTTAATTGGGACAACTGTCACTTTATGGTCCGCGAAGGGATTGTTCTTGGCCATCGAGTCTCTGAGAGAGGTATCAAAGTTGATCGTGCAAAAATCGAAGTCATAGATCAACTTCCACCTCTCGTCAATATCAAAGGAATCAGTAGCATCCTTGATCACACTGGCTTTTATAGAAGGTTCATCAAGGACTTCTCTACAATCACCAGACCGCTAACAAACTTGTTGGCTAAGGATGCCCCCATTGATTTTAACGATGTGTGCCTTAGATACTTTGAAACTCTAAAAAAGGCTCTCGTTTCCGCGCCAATCATTCAACCTCTTGATTGGACGCTTCCTTTCAAAATAATGTGTGATGCCAACGACTTTGTTGTTGGTGCGGTTTTGGGCCAAACCAAGGATAAAAAGCATCATGCAATCTACTACGCTAGCAAAACTCTAACCGGAGCTCAGTTGAATTATGCAACTACTGAAAAAGAGTTTCTTGCGGTTGTTTTTGCTATCGATAAGTTCATACCTTACTTAGTGGGTGCCAAAGTAATCAATTACACTAATCATGCTGCTCTGAAATACCTGCTCACTAAGAAATATGCTAAGCCACGTCTCTTGAGATGGATCCTCTTACCCCCAAGAATTTGA
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| Protein seq | MAKGVACGETCSPVALDAVPYWHYGDGRGWAKPVRPQPLTPNLIGTMAKGVGGTCSPTALDAIPYWHYIEGRGLWEDLRSLQNLDKSLQQCQEKDLVFNWDNCHFMVREGIVLGHRVSERGIKVDRAKIEVIDQLPPLVNIKGISSILDHTGFYRRFIKDFSTITRPLTNLLAKDAPIDFNDVCLRYFETLKKALVSAPIIQPLDWTLPFKIMCDANDFVVGAVLGQTKDKKHHAIYYASKTLTGAQLNYATTEKEFLAVVFAIDKFIPYLVGAKVINYTNHAALKYLLTKKYAKPRLLRWILLPPRI |
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| Function | Retrovirus-related Pol polyprotein from transposon opus [UniProtKB/Swiss-Prot:Q8I7P9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g33600 | LOC_Os03g33600.1 | Chr03 | 19206277 | 19208398 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGAAGGGCGTGGCGTGTGGCGAAACCTGTTCGCCCGTAGCCCTTGACGCGGTACCTTATTGGCACTATGGCGATGGGCGTGGGTGGGCAAAACCTGTTCGCCCGCAGCCCTTGACGCCGAACCTTATTGGCACTATGGCGAAGGGCGTGGGTGGAACCTGTTCGCCCACAGCCCTTGACGCCATACCTTATTGGCACTATATCGAAGGGCGTGGTCTATGGGAAGACCTTCGATCTCTCCAAAATTTGGACAAGTCCTTGCAGCAATGCCAAGAAAAGGACCTGGTATTTAATTGGGACAACTGTCACTTTATGGTCCGCGAAGGGATTGTTCTTGGCCATCGAGTCTCTGAGAGAGGTATCAAAGTTGATCGTGCAAAAATCGAAGTCATAGATCAACTTCCACCTCTCGTCAATATCAAAGGAATCAGTAGCATCCTTGATCACACTGGCTTTTATAGAAGGTTCATCAAGGACTTCTCTACAATCACCAGACCGCTAACAAACTTGTTGGCTAAGGATGCCCCCATTGATTTTAACGATGTGTGCCTTAGATACTTTGAAACTCTAAAAAAGGCTCTCGTTTCCGCGCCAATCATTCAACCTCTTGATTGGACGCTTCCTTTCAAAATAATGTGTGATGCCAACGACTTTGTTGTTGGTGCGGTTTTGGGCCAAACCAAGGATAAAAAGCATCATGCAATCTACTACGCTAGCAAAACTCTAACCGGAGCTCAGTTGAATTATGCAACTACTGAAAAAGAGTTTCTTGCGGTTGTTTTTGCTATCGATAAGTTCATACCTTACTTAGTGGGTGCCAAAGTAATCAATTACACTAATCATGCTGCTCTGAAATACCTGCTCACTAAGAAATATGCTAAGCCACGTCTCTTGAGATGGATCCTCTTACCCCCAAGAATTTGA
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| Protein seq | MAKGVACGETCSPVALDAVPYWHYGDGRGWAKPVRPQPLTPNLIGTMAKGVGGTCSPTALDAIPYWHYIEGRGLWEDLRSLQNLDKSLQQCQEKDLVFNWDNCHFMVREGIVLGHRVSERGIKVDRAKIEVIDQLPPLVNIKGISSILDHTGFYRRFIKDFSTITRPLTNLLAKDAPIDFNDVCLRYFETLKKALVSAPIIQPLDWTLPFKIMCDANDFVVGAVLGQTKDKKHHAIYYASKTLTGAQLNYATTEKEFLAVVFAIDKFIPYLVGAKVINYTNHAALKYLLTKKYAKPRLLRWILLPPRI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0023140 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0023020 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0023070 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0013190 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0007760 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0315600 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007890 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0318500 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0007720 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008040 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0007740 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0015810 | SBH | 0.372444 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0007790 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007970 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008050 | SBH | 0.0 | 0.0 | 0.0 |
