Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g32230 | OGI:03049460 | 6/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:18435989-18437090 | ||||||||
| Gene Symbol | BSRD1, ZFP36, OsZFP36, OsBSRD1, Bsr-d1, BSR-D1, DLN91, OsDLN91 | ||||||||||
| DNA seq | TGGAGTCGTAATAATATAGCGTCTATATATATTGAGCAGATTGAGTACATTAATTTTTAGATTGAACAAATATACAAAGAATCAAATGAATCAACACTCCTAGAACCATATATGTCCCTTGGCGACAATCAATCTTGGAAGATCCATGGTCACCAGCTTAGCTTGTTGCATACTCGATGACAGAAACCAAACAATTAGTGAGTTGAAAAGAAAAAAAAAATCAAAGAATAGACTCTGTTCAATAGAGTCGATCAATGGGCAGATCTCTTGTTTTTACAAGATGGCGTATGATGAATTAGTTGGACATCCTGAGCTTCTTGACCGGCAGTGGACTCTGCACCTCCTCCTCCTCCGCCCACCTCTTGATCCCGGCGGCGGCTGTGCTCTCCGGCAGCGGCATCAGGTTGAGGTCGAAGTTCCTGACGGCCGACGAGGCGGCCGACGCGGACGCCGAGACGGAGACGGACACCGACGTGCCGTCCCAGTAGTGGCAGCGCTTGTGGCCGCCGAGCGCCTGCCCCGTCGCGAAGCTCCTCCTGCAGATGGTGCACCGGTGCGGGCCAGTGCTCCCGGCCGCTGACGACGCCGAGTCCTCCTTCGAGTCACCAGCGGATGCCAGCTGCTGCGCCGCGGCGGCGGCGCCGTAGTGGTCTCCCGGGGAAGGCGGCTTCCGGTGGCTGGACTTGTGTCCGCCGAGCGCCTGGTACGAGGCGAAGGCCTTCCCGCAGACGGTGCACCGGAAGCGGAGCTCCTCAGGCGCCGCGGGCGCTGGGCACAGCCACTTATTGCAGGCCTGCACCTGCTGCTGGCCTCCCACTCCCACCAGGGCCTTCCCCGCCCGCGTGCAGGCGAGCGCGGCGAGGCAGATGGCGAGGTACTCCTCCTTGTTGATCGCCGGCGTGGGCAGGCCCAAGGACAGCGCCGTCGGGTCGAGCAGCGCTTGCAGGGCGGCCGTCATATCTGTCCCCGTTGCCGTCGTCGTAAAACCTAATTAATCAAGCTGTATAGTACGTAGCAGCAGCAGCGAGCGGTGGATGATTTGATGGGATTGATTGCTAACAAGTACAGTACGTAGCTGCAGGGAGATGGATGGATGATGAGC
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| CDS seq | ATGACGGCCGCCCTGCAAGCGCTGCTCGACCCGACGGCGCTGTCCTTGGGCCTGCCCACGCCGGCGATCAACAAGGAGGAGTACCTCGCCATCTGCCTCGCCGCGCTCGCCTGCACGCGGGCGGGGAAGGCCCTGGTGGGAGTGGGAGGCCAGCAGCAGGTGCAGGCCTGCAATAAGTGGCTGTGCCCAGCGCCCGCGGCGCCTGAGGAGCTCCGCTTCCGGTGCACCGTCTGCGGGAAGGCCTTCGCCTCGTACCAGGCGCTCGGCGGACACAAGTCCAGCCACCGGAAGCCGCCTTCCCCGGGAGACCACTACGGCGCCGCCGCCGCGGCGCAGCAGCTGGCATCCGCTGGTGACTCGAAGGAGGACTCGGCGTCGTCAGCGGCCGGGAGCACTGGCCCGCACCGGTGCACCATCTGCAGGAGGAGCTTCGCGACGGGGCAGGCGCTCGGCGGCCACAAGCGCTGCCACTACTGGGACGGCACGTCGGTGTCCGTCTCCGTCTCGGCGTCCGCGTCGGCCGCCTCGTCGGCCGTCAGGAACTTCGACCTCAACCTGATGCCGCTGCCGGAGAGCACAGCCGCCGCCGGGATCAAGAGGTGGGCGGAGGAGGAGGAGGTGCAGAGTCCACTGCCGGTCAAGAAGCTCAGGATGTCCAACTAA
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| Protein seq | MTAALQALLDPTALSLGLPTPAINKEEYLAICLAALACTRAGKALVGVGGQQQVQACNKWLCPAPAAPEELRFRCTVCGKAFASYQALGGHKSSHRKPPSPGDHYGAAAAAQQLASAGDSKEDSASSAAGSTGPHRCTICRRSFATGQALGGHKRCHYWDGTSVSVSVSASASAASSAVRNFDLNLMPLPESTAAAGIKRWAEEEEVQSPLPVKKLRMSN |
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| Function | Zinc finger protein 36 [UniProtKB/Swiss-Prot:Q75KE5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g32230 | LOC_Os03g32230.1 | Chr03 | 18435989 | 18437090 | - | MSU_osa1r7 | ||
| CDS seq | ATGACGGCCGCCCTGCAAGCGCTGCTCGACCCGACGGCGCTGTCCTTGGGCCTGCCCACGCCGGCGATCAACAAGGAGGAGTACCTCGCCATCTGCCTCGCCGCGCTCGCCTGCACGCGGGCGGGGAAGGCCCTGGTGGGAGTGGGAGGCCAGCAGCAGGTGCAGGCCTGCAATAAGTGGCTGTGCCCAGCGCCCGCGGCGCCTGAGGAGCTCCGCTTCCGGTGCACCGTCTGCGGGAAGGCCTTCGCCTCGTACCAGGCGCTCGGCGGACACAAGTCCAGCCACCGGAAGCCGCCTTCCCCGGGAGACCACTACGGCGCCGCCGCCGCGGCGCAGCAGCTGGCATCCGCTGGTGACTCGAAGGAGGACTCGGCGTCGTCAGCGGCCGGGAGCACTGGCCCGCACCGGTGCACCATCTGCAGGAGGAGCTTCGCGACGGGGCAGGCGCTCGGCGGCCACAAGCGCTGCCACTACTGGGACGGCACGTCGGTGTCCGTCTCCGTCTCGGCGTCCGCGTCGGCCGCCTCGTCGGCCGTCAGGAACTTCGACCTCAACCTGATGCCGCTGCCGGAGAGCACAGCCGCCGCCGGGATCAAGAGGTGGGCGGAGGAGGAGGAGGTGCAGAGTCCACTGCCGGTCAAGAAGCTCAGGATGTCCAACTAA
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| Protein seq | MTAALQALLDPTALSLGLPTPAINKEEYLAICLAALACTRAGKALVGVGGQQQVQACNKWLCPAPAAPEELRFRCTVCGKAFASYQALGGHKSSHRKPPSPGDHYGAAAAAQQLASAGDSKEDSASSAAGSTGPHRCTICRRSFATGQALGGHKRCHYWDGTSVSVSVSASASAASSAVRNFDLNLMPLPESTAAAGIKRWAEEEEVQSPLPVKKLRMSN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.305623 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0437200 | RBH | 0.0 | 0.456474 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0437200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0022850 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0022700 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0022770 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0022740 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0022550 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0304100 | SBH | 0.3039505 | 29.8813715 | 0.2852305 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0022300 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0307500 | RBH | 0.7678085 | 42.3143235 | 0.0139195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0022600 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0022580 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0022710 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0022530 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0022380 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G022370 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0022290 | RBH | 0.0 | 0.0 | 0.0 |
