Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g30420 | OGI:03046440 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:17340415-17342284 | ||||||||
| Gene Symbol | GL3.2, GL3.2 | ||||||||||
| DNA seq | GATTAAAGGCGTAATTGCATATTTGTTTCTCAGGCAGCAACAACCAACCAAACAAGCATATACTCAAGCTGCCTGACCAGGTTAGATGCATTGGTCTTCTCACATGCCACTCAGGCGCACAGAAATTTCAGGCATGTTATGTTACTCAGGGCAGCAACCAACCAAACAGCCCCATACTCCTTGATCATCACCACCTAGGTTTAGCCTTGCACACGAGAGGCTTCTCCATCTCCAGCGACATGTTCAGGCGCTCCAACAAGTGGACGCCGCCGCCGACCGGTGCCCACTCGAAGCGGTGCAGCAGCTGCGCGAGCCAGAGGTGGACGGTGGCGAGCGCGAGCGTCTTGCCCGGGCAGGCGCGCCGCCCCGCGCCGAACGGCGCGAGGCGGAGGTCGCCGCCGAGCACGCTGACGTCCTCCTCCGCGAACCGCTCCGGCCGGAACTCGTCGGGCTCCGGCCAGAGCTCCGGGTCGTGCGCGATGGCCCACATGTTGACCATGGCCGTGGTGCCCGCGGGGACCACGTGGCCGCCGACGTGCGCGTCGCGCACGGCGAGGCGCGCCCACGACAGGAGCGGGCCCGGCGGGTGCACGCGGAGCGCCTCCTTCACGACGCACTGGAGGTAGCGCAGGCCGGCGACGTCGCCGTCCGACACGGCGCGCCCGCGGCCGACGACGGCGTCGAGCTCCGCCTGCGCCTTCGCCTGGATGTCCGGGTGCAGCACCATCCTCGCCATGATCCATTCCAGCAGAATCGCCACCGTGTCCGTCCCCCGAAAGATCATCTCCTGCACGCGCGCAAGATCAAATATATCCATGAATCCGTTGATCGCAATGCACAAGATCGATCGAATAGATGCATGCATGTCAGATGGATCCTTGGTTACCCAGAGAACGGCGACCATGTCGGACTCCGTCATCTTCTCCTCCCCCTGCAACCCGAGCAACACGTCGACGAAGTCGCCGGGGAGCTCCTCGCCTCCGCCATTGCCGCCGGTGCGGCGCTTCCTCTGCCTGTGCTCGTCGATGATGCTTCGGACGAACACGTCGACTCGTTGCACCAGCGTCCTGCACCTCCTCCTCACGCCTTGCAGGTCGAGCCATTTGAGCAGCGGCAGGTGGTCTCCCCAGTTGAACATCCCGAGGAGGTCGTACCCTTCCTTCACCATGGCCTCGAGCTCGGCGCCCTCCTGGCTGTCGCCGTCGTAGCGCGTCCCGAAGACGGTGTCCATGACGTGGTCCAGGGACGCCGCGTGGAGCACGCGCCTCATGCCGATCTCGCCGCCGGCGAGGGCGGACAGGCGGTCTAGCATGCGCTCGCCGATGGCGAGGCGTCGCGGGGCCGAGGCGGCGACGCGGCGAGGGGTGAAGAGGTGGTTGGCGCTGACGCGGCGGAGCGCGCGCCAGTAGTCGCCGGAGGGCGCGAACCCCATGGCGCGGTGGAAGAGCAAACCCCGCGCCGCGTCCTTCACGGGGCGGTCGGCGAACGCGGCGCTGGACAGGAGCTCCCGCGCCGTGTCGGGGCGGCTGGCCACGACGAAACGCGTGAGGCCGACGGAGAAGGACGCCAGGGCGGCGCCGCCAGGCACGGACCTCGACATGGCCGCGAGCGCGCGGTGCGCGGCGGGGCCGGCGAGCGCGGCGAGCGCGCCCGGCGCGCCGGGCGGGGGCCGGCGGCAGCGGGAGAGCGCCCACGCGGGGCCGCCCGGGACGAGCCAGAGCAGCGAGGTGACGGCGAGGAGGGCAGCGAGGAGCGGGGAGAAGAAGGTGGTGGAGTTGGCCGGGAGGAGGAGGAGGTAGCCATGGGTAGTGGAGGCGCCGAGAGTGGCATCCATGGCGTGTGAGAATGTTGGGGGGAGGCAGGAGGGTGC
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| CDS seq | ATGGATGCCACTCTCGGCGCCTCCACTACCCATGGCTACCTCCTCCTCCTCCCGGCCAACTCCACCACCTTCTTCTCCCCGCTCCTCGCTGCCCTCCTCGCCGTCACCTCGCTGCTCTGGCTCGTCCCGGGCGGCCCCGCGTGGGCGCTCTCCCGCTGCCGCCGGCCCCCGCCCGGCGCGCCGGGCGCGCTCGCCGCGCTCGCCGGCCCCGCCGCGCACCGCGCGCTCGCGGCCATGTCGAGGTCCGTGCCTGGCGGCGCCGCCCTGGCGTCCTTCTCCGTCGGCCTCACGCGTTTCGTCGTGGCCAGCCGCCCCGACACGGCGCGGGAGCTCCTGTCCAGCGCCGCGTTCGCCGACCGCCCCGTGAAGGACGCGGCGCGGGGTTTGCTCTTCCACCGCGCCATGGGGTTCGCGCCCTCCGGCGACTACTGGCGCGCGCTCCGCCGCGTCAGCGCCAACCACCTCTTCACCCCTCGCCGCGTCGCCGCCTCGGCCCCGCGACGCCTCGCCATCGGCGAGCGCATGCTAGACCGCCTGTCCGCCCTCGCCGGCGGCGAGATCGGCATGAGGCGCGTGCTCCACGCGGCGTCCCTGGACCACGTCATGGACACCGTCTTCGGGACGCGCTACGACGGCGACAGCCAGGAGGGCGCCGAGCTCGAGGCCATGGTGAAGGAAGGGTACGACCTCCTCGGGATGTTCAACTGGGGAGACCACCTGCCGCTGCTCAAATGGCTCGACCTGCAAGGCGTGAGGAGGAGGTGCAGGACGCTGGTGCAACGAGTCGACGTGTTCGTCCGAAGCATCATCGACGAGCACAGGCAGAGGAAGCGCCGCACCGGCGGCAATGGCGGAGGCGAGGAGCTCCCCGGCGACTTCGTCGACGTGTTGCTCGGGTTGCAGGGGGAGGAGAAGATGACGGAGTCCGACATGGTCGCCGTTCTCTGGGAGATGATCTTTCGGGGGACGGACACGGTGGCGATTCTGCTGGAATGGATCATGGCGAGGATGGTGCTGCACCCGGACATCCAGGCGAAGGCGCAGGCGGAGCTCGACGCCGTCGTCGGCCGCGGGCGCGCCGTGTCGGACGGCGACGTCGCCGGCCTGCGCTACCTCCAGTGCGTCGTGAAGGAGGCGCTCCGCGTGCACCCGCCGGGCCCGCTCCTGTCGTGGGCGCGCCTCGCCGTGCGCGACGCGCACGTCGGCGGCCACGTGGTCCCCGCGGGCACCACGGCCATGGTCAACATGTGGGCCATCGCGCACGACCCGGAGCTCTGGCCGGAGCCCGACGAGTTCCGGCCGGAGCGGTTCGCGGAGGAGGACGTCAGCGTGCTCGGCGGCGACCTCCGCCTCGCGCCGTTCGGCGCGGGGCGGCGCGCCTGCCCGGGCAAGACGCTCGCGCTCGCCACCGTCCACCTCTGGCTCGCGCAGCTGCTGCACCGCTTCGAGTGGGCACCGGTCGGCGGCGGCGTCCACTTGTTGGAGCGCCTGAACATGTCGCTGGAGATGGAGAAGCCTCTCGTGTGCAAGGCTAAACCTAGGTGGTGA
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| Protein seq | MDATLGASTTHGYLLLLPANSTTFFSPLLAALLAVTSLLWLVPGGPAWALSRCRRPPPGAPGALAALAGPAAHRALAAMSRSVPGGAALASFSVGLTRFVVASRPDTARELLSSAAFADRPVKDAARGLLFHRAMGFAPSGDYWRALRRVSANHLFTPRRVAASAPRRLAIGERMLDRLSALAGGEIGMRRVLHAASLDHVMDTVFGTRYDGDSQEGAELEAMVKEGYDLLGMFNWGDHLPLLKWLDLQGVRRRCRTLVQRVDVFVRSIIDEHRQRKRRTGGNGGGEELPGDFVDVLLGLQGEEKMTESDMVAVLWEMIFRGTDTVAILLEWIMARMVLHPDIQAKAQAELDAVVGRGRAVSDGDVAGLRYLQCVVKEALRVHPPGPLLSWARLAVRDAHVGGHVVPAGTTAMVNMWAIAHDPELWPEPDEFRPERFAEEDVSVLGGDLRLAPFGAGRRACPGKTLALATVHLWLAQLLHRFEWAPVGGGVHLLERLNMSLEMEKPLVCKAKPRW |
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| Function | Cytochrome P450 78A5 [UniProtKB/Swiss-Prot:Q9LMX7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g30420 | LOC_Os03g30420.1 | Chr03 | 17340415 | 17342284 | - | MSU_osa1r7 | ||
| CDS seq | ATGGATGCCACTCTCGGCGCCTCCACTACCCATGGCTACCTCCTCCTCCTCCCGGCCAACTCCACCACCTTCTTCTCCCCGCTCCTCGCTGCCCTCCTCGCCGTCACCTCGCTGCTCTGGCTCGTCCCGGGCGGCCCCGCGTGGGCGCTCTCCCGCTGCCGCCGGCCCCCGCCCGGCGCGCCGGGCGCGCTCGCCGCGCTCGCCGGCCCCGCCGCGCACCGCGCGCTCGCGGCCATGTCGAGGTCCGTGCCTGGCGGCGCCGCCCTGGCGTCCTTCTCCGTCGGCCTCACGCGTTTCGTCGTGGCCAGCCGCCCCGACACGGCGCGGGAGCTCCTGTCCAGCGCCGCGTTCGCCGACCGCCCCGTGAAGGACGCGGCGCGGGGTTTGCTCTTCCACCGCGCCATGGGGTTCGCGCCCTCCGGCGACTACTGGCGCGCGCTCCGCCGCGTCAGCGCCAACCACCTCTTCACCCCTCGCCGCGTCGCCGCCTCGGCCCCGCGACGCCTCGCCATCGGCGAGCGCATGCTAGACCGCCTGTCCGCCCTCGCCGGCGGCGAGATCGGCATGAGGCGCGTGCTCCACGCGGCGTCCCTGGACCACGTCATGGACACCGTCTTCGGGACGCGCTACGACGGCGACAGCCAGGAGGGCGCCGAGCTCGAGGCCATGGTGAAGGAAGGGTACGACCTCCTCGGGATGTTCAACTGGGGAGACCACCTGCCGCTGCTCAAATGGCTCGACCTGCAAGGCGTGAGGAGGAGGTGCAGGACGCTGGTGCAACGAGTCGACGTGTTCGTCCGAAGCATCATCGACGAGCACAGGCAGAGGAAGCGCCGCACCGGCGGCAATGGCGGAGGCGAGGAGCTCCCCGGCGACTTCGTCGACGTGTTGCTCGGGTTGCAGGGGGAGGAGAAGATGACGGAGTCCGACATGGTCGCCGTTCTCTGGGAGATGATCTTTCGGGGGACGGACACGGTGGCGATTCTGCTGGAATGGATCATGGCGAGGATGGTGCTGCACCCGGACATCCAGGCGAAGGCGCAGGCGGAGCTCGACGCCGTCGTCGGCCGCGGGCGCGCCGTGTCGGACGGCGACGTCGCCGGCCTGCGCTACCTCCAGTGCGTCGTGAAGGAGGCGCTCCGCGTGCACCCGCCGGGCCCGCTCCTGTCGTGGGCGCGCCTCGCCGTGCGCGACGCGCACGTCGGCGGCCACGTGGTCCCCGCGGGCACCACGGCCATGGTCAACATGTGGGCCATCGCGCACGACCCGGAGCTCTGGCCGGAGCCCGACGAGTTCCGGCCGGAGCGGTTCGCGGAGGAGGACGTCAGCGTGCTCGGCGGCGACCTCCGCCTCGCGCCGTTCGGCGCGGGGCGGCGCGCCTGCCCGGGCAAGACGCTCGCGCTCGCCACCGTCCACCTCTGGCTCGCGCAGCTGCTGCACCGCTTCGAGTGGGCACCGGTCGGCGGCGGCGTCCACTTGTTGGAGCGCCTGAACATGTCGCTGGAGATGGAGAAGCCTCTCGTGTGCAAGGCTAAACCTAGGTGGTGA
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| Protein seq | MDATLGASTTHGYLLLLPANSTTFFSPLLAALLAVTSLLWLVPGGPAWALSRCRRPPPGAPGALAALAGPAAHRALAAMSRSVPGGAALASFSVGLTRFVVASRPDTARELLSSAAFADRPVKDAARGLLFHRAMGFAPSGDYWRALRRVSANHLFTPRRVAASAPRRLAIGERMLDRLSALAGGEIGMRRVLHAASLDHVMDTVFGTRYDGDSQEGAELEAMVKEGYDLLGMFNWGDHLPLLKWLDLQGVRRRCRTLVQRVDVFVRSIIDEHRQRKRRTGGNGGGEELPGDFVDVLLGLQGEEKMTESDMVAVLWEMIFRGTDTVAILLEWIMARMVLHPDIQAKAQAELDAVVGRGRAVSDGDVAGLRYLQCVVKEALRVHPPGPLLSWARLAVRDAHVGGHVVPAGTTAMVNMWAIAHDPELWPEPDEFRPERFAEEDVSVLGGDLRLAPFGAGRRACPGKTLALATVHLWLAQLLHRFEWAPVGGGVHLLERLNMSLEMEKPLVCKAKPRW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0417700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g41240 | RBH | 0.0 | 0.0 | 0.145769 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0417700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0021850 | RBH | 0.094324 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0021690 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0021750 | RBH | 0.022050 | 0.607816 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0021780 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0021600 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0286400 | RBH | 0.1118335 | 15.645949 | 0.009406 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0021330 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0289900 | RBH | 0.1543385 | 8.3837015 | 0.011425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0021610 | RBH | 0.0 | 0.033753 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0021610 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0021690 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0021570 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0021380 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G021350 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0021250 | RBH | 0.259556 | 0.0 | 0.0 |
