Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g25960 | OGI:03040020 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:14866653-14868768 | ||||||||
| Gene Symbol | CRP4, OsCRP4, cpRNP4 | ||||||||||
| DNA seq | TTTTGGACCGGAATGACACACTTTGTCAAATTATGAGACCTGAATAGCACAAGTTTAGAGACCGGCCGTGCACTTTACTCTATAATTCAAGGAACAAGCCATACATAACAAAAAAAAGTGGGTTCAAAAAGTTAAAACAAAATGATATATATCTCATCACCAAACCAATCTTTTGAACCATATGGTGGAAGTTACGACTAGAATTCCATCGATGCTATAGAACAATCATGACGATAGTATGATTCATATCTGGACTAACCATAGGCTTCAGGGCATCTAAACGAATTTCAATATTGTCTCCTAGGTGGTTTCGATTCTGCTACTGTAACTCGGATCTGTCTGCCATCCATGTCCTGCACAACAAAGAAAATAGGCTTGTTTTAGCACACACTAAAAGAACAATGATGCTGAAAGACATATGAGAATAAGAAACCAGCCAGACTTAGTGAAAACTCACAGCGCCATCAAGATTTGAAACTGCATTCTCAACCTCTTCAGCGGAACCATACGTGACAAAACCAAATCCCCTTGACCTGCCACTCTCCCTGTCATAGATGACCTTGGCTTCCAAGACCTCCCCTTCCCCACTGAATAGGTTTGCGAGAGCTGCATTGTCAACACCCCAAGAAAGGTTACCTACATAGACCCTGTTGGCCTCACCCCTGGGTGCTCTCTGCGATGATTGCTCCCTTGGTGGTGGTGGCCCTGAGTTAACCCTCAAAGATCTCCCATCAAGTATCTGTTTTAAGAAATGAAATCAGCAAATTAGTTAAGCACAATTCAATGATGTTGTATAGGATATAACACAACATATGTCCAGCAACATGCCAGAAAAGAGTAAATTAAAGTTTGTTTTCTAGTCATGAATAAGCTAAAAGCAAACAAGGATTAAAACAAGCAAGCAGGTTCATATCGAGCAACCTCAGCTACAGTTATCTTGAAAGAATGCAAGCCACAGCATGCAAACCAAAGAGATGAAATAGGAGCGCACTTTATGCAATATATTTTTAGCCAGCCCATATACCAACATGGAGCAAAAATAATGACTTAGAAGTATGGAAGCATATACTCACATAGCCATTGAATTGCTCGACAGCTGCCTCAACTTCTTCAACACTAGACATTGTCACAAACCCAAACCCACGACTCCTTCCAGTCAGCTTATCATAGATGACCTGCAACAATGCAGTTTAGCATGATACAATATAGGAAAAATCAACCAAAGCCGAGTACTACTCTTAAAATTGAGCAATTAACCAGAAAAATGCAATCCTAAATCTTTCGCCAGTCACAGAATTAATAGCATGAGCGCCAGCACACCAAATTTAACAACCTTAAATAATGGCAACCTTATCGCATCCTTAATCATCTCCAAATACAACCTCACAATGAGCACCCGAAATAAGTTTTTTTTTCTTAAAAGAACGAGAATATGCCCACACTACCATATGCAACCCAATTGTATCGCGGTTTAAGCTAAATTAACAACAGAATGAATTTGTCGTGAACTGTAATATGAAGCAACTAGACACAATCATTCATCACCACTTCACCAGCGACCAGCGGTCCATTTCTGGTTTCACAAAGACAGGGACACACCAGCGAGCGACTCGACGAAGGTGGTGTGATAGGAGTACTTAGTAAGGCGAGACGAATGGGGTGGTGACCTCGACCATCTCGACGGAGCCGGCCTGCTCGAAGAGGCCGGCGAGCTGGGCGCTGTCGACGCTGAAGGGCAGGTTGCCGACGAAGACCCTCAGGTCGTCGGAGAACTCCTCGCCCCCGGAGCCCTCCTCCTCCTCCTCCTCGTCCTCCTCCGTCTCGACCTCCTCCGACACGGCCACGGCCACCGGCACGAAGGGGCTGGTCCTCCTCCGCGGCCATCCCGCGACGGCGAGGGCGGGGAGCAGCGGCTTGGAGAGGAAGGAGAGGGAGGATGAGGCGGGGTTGGAGGAGGTGGAGGGGAGGGGGAGGAGGTGCGGGGAGAGGGCGGTGGAGAAGAGCGTGGCCGCCATGGGTGAGGAGGAAAGGGGATGGGATCGATAGGGTTTTGGGGATAAGGCGGAGTGAGGAGAGGAGAGAGCACAAACTGGGAAAGAGGCAACAGTAGAGGAGA
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| CDS seq | ATGGCGGCCACGCTCTTCTCCACCGCCCTCTCCCCGCACCTCCTCCCCCTCCCCTCCACCTCCTCCAACCCCGCCTCATCCTCCCTCTCCTTCCTCTCCAAGCCGCTGCTCCCCGCCCTCGCCGTCGCGGGATGGCCGCGGAGGAGGACCAGCCCCTTCGTGCCGGTGGCCGTGGCCGTGTCGGAGGAGGTCGAGACGGAGGAGGACGAGGAGGAGGAGGAGGAGGGCTCCGGGGGCGAGGAGTTCTCCGACGACCTGAGGGTCTTCGTCGGCAACCTGCCCTTCAGCGTCGACAGCGCCCAGCTCGCCGGCCTCTTCGAGCAGGCCGGCTCCGTCGAGATGGTCGAGGTCATCTATGATAAGCTGACTGGAAGGAGTCGTGGGTTTGGGTTTGTGACAATGTCTAGTGTTGAAGAAGTTGAGGCAGCTGTCGAGCAATTCAATGGCTATATACTTGATGGGAGATCTTTGAGGGTTAACTCAGGGCCACCACCACCAAGGGAGCAATCATCGCAGAGAGCACCCAGGGGTGAGGCCAACAGGGTCTATGTAGGTAACCTTTCTTGGGGTGTTGACAATGCAGCTCTCGCAAACCTATTCAGTGGGGAAGGGGAGGTCTTGGAAGCCAAGGTCATCTATGACAGGGAGAGTGGCAGGTCAAGGGGATTTGGTTTTGTCACGTATGGTTCCGCTGAAGAGGTTGAGAATGCAGTTTCAAATCTTGATGGCGCTGACATGGATGGCAGACAGATCCGAGTTACAGTAGCAGAATCGAAACCACCTAGGAGACAATATTGA
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| Protein seq | MAATLFSTALSPHLLPLPSTSSNPASSSLSFLSKPLLPALAVAGWPRRRTSPFVPVAVAVSEEVETEEDEEEEEEGSGGEEFSDDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQFNGYILDGRSLRVNSGPPPPREQSSQRAPRGEANRVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRVTVAESKPPRRQY |
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| Function | RNA-binding protein CP29B, chloroplastic [UniProtKB/Swiss-Prot:Q9ZUU4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g25960 | LOC_Os03g25960.1 | Chr03 | 14866653 | 14868768 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGGCCACGCTCTTCTCCACCGCCCTCTCCCCGCACCTCCTCCCCCTCCCCTCCACCTCCTCCAACCCCGCCTCATCCTCCCTCTCCTTCCTCTCCAAGCCGCTGCTCCCCGCCCTCGCCGTCGCGGGATGGCCGCGGAGGAGGACCAGCCCCTTCGTGCCGGTGGCCGTGGCCGTGTCGGAGGAGGTCGAGACGGAGGAGGACGAGGAGGAGGAGGAGGAGGGCTCCGGGGGCGAGGAGTTCTCCGACGACCTGAGGGTCTTCGTCGGCAACCTGCCCTTCAGCGTCGACAGCGCCCAGCTCGCCGGCCTCTTCGAGCAGGCCGGCTCCGTCGAGATGGTCGAGGTCATCTATGATAAGCTGACTGGAAGGAGTCGTGGGTTTGGGTTTGTGACAATGTCTAGTGTTGAAGAAGTTGAGGCAGCTGTCGAGCAATTCAATGGCTATATACTTGATGGGAGATCTTTGAGGGTTAACTCAGGGCCACCACCACCAAGGGAGCAATCATCGCAGAGAGCACCCAGGGGTGAGGCCAACAGGGTCTATGTAGGTAACCTTTCTTGGGGTGTTGACAATGCAGCTCTCGCAAACCTATTCAGTGGGGAAGGGGAGGTCTTGGAAGCCAAGGTCATCTATGACAGGGAGAGTGGCAGGTCAAGGGGATTTGGTTTTGTCACGTATGGTTCCGCTGAAGAGGTTGAGAATGCAGTTTCAAATCTTGATGGCGCTGACATGGATGGCAGACAGATCCGAGTTACAGTAGCAGAATCGAAACCACCTAGGAGACAATATTGA
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| Protein seq | MAATLFSTALSPHLLPLPSTSSNPASSSLSFLSKPLLPALAVAGWPRRRTSPFVPVAVAVSEEVETEEDEEEEEEGSGGEEFSDDLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAVEQFNGYILDGRSLRVNSGPPPPREQSSQRAPRGEANRVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAEEVENAVSNLDGADMDGRQIRVTVAESKPPRRQY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 10.199184 | 8.710197 | 1.304338 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0376600 | RBH | 15.275120 | 13.116249 | 5.131883 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g43810 | RBH | 54.566872 | 51.708920 | 2.874298 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0376600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0019560 | RBH | 4.175495 | 5.212017 | 7.621172 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0019410 | RBH | 0.663332 | 0.0 | 7.093160 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0019420 | RBH | 7.002620 | 1.918644 | 14.273088 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0019460 | RBH | 1.379232 | 0.136993 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0019220 | RBH | 23.094028 | 0.0 | 24.632578 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0247500 | RBH | 60.3678015 | 12.182952 | 6.6424395 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0019080 | RBH | 4.330230 | 0.546175 | 2.563618 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0247800 | RBH | 24.160423 | 17.144123 | 38.8142795 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0019250 | RBH | 0.685881 | 0.394724 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0019260 | RBH | 1.689506 | 2.579396 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0019330 | RBH | 19.551474 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0019190 | RBH | 5.383005 | 1.126836 | 3.385298 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0019110 | RBH | 1.211568 | 2.388747 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G019190 | RBH | 2.874336 | 4.900932 | 3.655484 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0019040 | RBH | 11.687965 | 6.809732 | 15.180184 |
