Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g25280 | OGI:03038730 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:14436110-14437455 | ||||||||
| Gene Symbol | prx42 | ||||||||||
| DNA seq | TTTTGTGAAATTTACTCCAAAAATATATTCCAATGTTATTACATGATAAAGTGTCATATTACACAATTACATAATAGGAGAGGACATATATAATAATCAACACAAAATACACTACACAAAAGAATGAACGAATAAATACAAAAACAAAACGTAGCAATGAGAAAATTTGATGGAACACACGTTGAATTCAATATATAGATGATTAGTTGACGACCCTGCAGTGCCTCCTGATCTCGCCGGGGTAGCCGGTCTTGACACCGACGGATGCCATCTTGACGAACGCCTTGGCGAACTTGTCCTCCCACCACCCCGGGATGTTGGCGTTGTCCGACACCATCTTCGCCGTCGCCGGCGACGTCAGCAGCGCCGCGTCCGACGCGAAGAGCACCTTGTGCGCCACCACGTTCTTGTAGTACTGGTTGTCGAACGCGTTGGGCGTGACGGCGTCCTGGTTCACCGTCGGGTCGTTGCTGGAGGTCGGGTTGGCCGGGCACCTCTGCTTGAGGAAGTTGGCGAAGCCGCCGTTGATGTCGGAGGGCGCGGCGACGCGGTCCGAGACGAAGGAGGAGCAGTGGGAGCGGCCGACGGTGTGGGCGCCGGAGAGCACCACCATGTCCTCGGCGTCGAGGCCCTTGGCGGCGAACGCGCCGATGAGCTGGTTCACGTTGAAGTTGGGCGGCGGCAGGTTGTTGAGGGCGTCGGAGTCGAGGGAGCGGCGGCCATCGAGGCGTCCACCTGGGACGTTGATCTTGACCCTGAATCTGCTGAGGAAGTAGGCGGCGTCGCGGGCGGCGAAGGCGACGATGTCGGCGCACGAGACCACGCCGGGGCAGACCTTCTCGACGGCGTCCTTGGCGGCGTCGATCACCTCGAAGCCGCGGAGGCTGGGCATGTTGGGCGGGCTGAGCTTCTCCGGCTTCGGGTTCGCCGGAGTTGGGTCCAGGAGCACCGAGCCATCACATCCCTATCAACAAACACATACATGCATATGATGATCTGTCACGCTCACATTGATCTCATCTCACTGCCGCCATGGATTGCAAATTTGTGATTCAGAAATGCAATGCGACATACCTCGACGAAGCAGTCGTGGAAGACGAGGCGGATGAGTCCGGCGCCGATGCCGGCGTCCTTGTAGACGAACTTCTTCACCTCGTCCCTCACGATGGCCTCCACGCGGGGGCACGACTGCTTGTAGTAGCCCAGCTGCAGGCCGTGGCACGCCGACGCGAGCGCCAGCGCGCACGCCACCGCCATGGCGAGCTTCATGGCCGATGCTGCCATTGTCTTCTCTGCTGCTTCCTTGCTGGAAGAGAAGAGATGATCGATGGACTGCCTGCTTCTGC
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| CDS seq | ATGGCAGCATCGGCCATGAAGCTCGCCATGGCGGTGGCGTGCGCGCTGGCGCTCGCGTCGGCGTGCCACGGCCTGCAGCTGGGCTACTACAAGCAGTCGTGCCCCCGCGTGGAGGCCATCGTGAGGGACGAGGTGAAGAAGTTCGTCTACAAGGACGCCGGCATCGGCGCCGGACTCATCCGCCTCGTCTTCCACGACTGCTTCGTCGAGGGATGTGATGGCTCGGTGCTCCTGGACCCAACTCCGGCGAACCCGAAGCCGGAGAAGCTCAGCCCGCCCAACATGCCCAGCCTCCGCGGCTTCGAGGTGATCGACGCCGCCAAGGACGCCGTCGAGAAGGTCTGCCCCGGCGTGGTCTCGTGCGCCGACATCGTCGCCTTCGCCGCCCGCGACGCCGCCTACTTCCTCAGCAGATTCAGGGTCAAGATCAACGTCCCAGGTGGACGCCTCGATGGCCGCCGCTCCCTCGACTCCGACGCCCTCAACAACCTGCCGCCGCCCAACTTCAACGTGAACCAGCTCATCGGCGCGTTCGCCGCCAAGGGCCTCGACGCCGAGGACATGGTGGTGCTCTCCGGCGCCCACACCGTCGGCCGCTCCCACTGCTCCTCCTTCGTCTCGGACCGCGTCGCCGCGCCCTCCGACATCAACGGCGGCTTCGCCAACTTCCTCAAGCAGAGGTGCCCGGCCAACCCGACCTCCAGCAACGACCCGACGGTGAACCAGGACGCCGTCACGCCCAACGCGTTCGACAACCAGTACTACAAGAACGTGGTGGCGCACAAGGTGCTCTTCGCGTCGGACGCGGCGCTGCTGACGTCGCCGGCGACGGCGAAGATGGTGTCGGACAACGCCAACATCCCGGGGTGGTGGGAGGACAAGTTCGCCAAGGCGTTCGTCAAGATGGCATCCGTCGGTGTCAAGACCGGCTACCCCGGCGAGATCAGGAGGCACTGCAGGGTCGTCAACTAA
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| Protein seq | MAASAMKLAMAVACALALASACHGLQLGYYKQSCPRVEAIVRDEVKKFVYKDAGIGAGLIRLVFHDCFVEGCDGSVLLDPTPANPKPEKLSPPNMPSLRGFEVIDAAKDAVEKVCPGVVSCADIVAFAARDAAYFLSRFRVKINVPGGRLDGRRSLDSDALNNLPPPNFNVNQLIGAFAAKGLDAEDMVVLSGAHTVGRSHCSSFVSDRVAAPSDINGGFANFLKQRCPANPTSSNDPTVNQDAVTPNAFDNQYYKNVVAHKVLFASDAALLTSPATAKMVSDNANIPGWWEDKFAKAFVKMASVGVKTGYPGEIRRHCRVVN |
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| Function | Peroxidase 2 [UniProtKB/Swiss-Prot:Q9FEQ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g25280 | LOC_Os03g25280.1 | Chr03 | 14436110 | 14437455 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCAGCATCGGCCATGAAGCTCGCCATGGCGGTGGCGTGCGCGCTGGCGCTCGCGTCGGCGTGCCACGGCCTGCAGCTGGGCTACTACAAGCAGTCGTGCCCCCGCGTGGAGGCCATCGTGAGGGACGAGGTGAAGAAGTTCGTCTACAAGGACGCCGGCATCGGCGCCGGACTCATCCGCCTCGTCTTCCACGACTGCTTCGTCGAGGGATGTGATGGCTCGGTGCTCCTGGACCCAACTCCGGCGAACCCGAAGCCGGAGAAGCTCAGCCCGCCCAACATGCCCAGCCTCCGCGGCTTCGAGGTGATCGACGCCGCCAAGGACGCCGTCGAGAAGGTCTGCCCCGGCGTGGTCTCGTGCGCCGACATCGTCGCCTTCGCCGCCCGCGACGCCGCCTACTTCCTCAGCAGATTCAGGGTCAAGATCAACGTCCCAGGTGGACGCCTCGATGGCCGCCGCTCCCTCGACTCCGACGCCCTCAACAACCTGCCGCCGCCCAACTTCAACGTGAACCAGCTCATCGGCGCGTTCGCCGCCAAGGGCCTCGACGCCGAGGACATGGTGGTGCTCTCCGGCGCCCACACCGTCGGCCGCTCCCACTGCTCCTCCTTCGTCTCGGACCGCGTCGCCGCGCCCTCCGACATCAACGGCGGCTTCGCCAACTTCCTCAAGCAGAGGTGCCCGGCCAACCCGACCTCCAGCAACGACCCGACGGTGAACCAGGACGCCGTCACGCCCAACGCGTTCGACAACCAGTACTACAAGAACGTGGTGGCGCACAAGGTGCTCTTCGCGTCGGACGCGGCGCTGCTGACGTCGCCGGCGACGGCGAAGATGGTGTCGGACAACGCCAACATCCCGGGGTGGTGGGAGGACAAGTTCGCCAAGGCGTTCGTCAAGATGGCATCCGTCGGTGTCAAGACCGGCTACCCCGGCGAGATCAGGAGGCACTGCAGGGTCGTCAACTAA
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| Protein seq | MAASAMKLAMAVACALALASACHGLQLGYYKQSCPRVEAIVRDEVKKFVYKDAGIGAGLIRLVFHDCFVEGCDGSVLLDPTPANPKPEKLSPPNMPSLRGFEVIDAAKDAVEKVCPGVVSCADIVAFAARDAAYFLSRFRVKINVPGGRLDGRRSLDSDALNNLPPPNFNVNQLIGAFAAKGLDAEDMVVLSGAHTVGRSHCSSFVSDRVAAPSDINGGFANFLKQRCPANPTSSNDPTVNQDAVTPNAFDNQYYKNVVAHKVLFASDAALLTSPATAKMVSDNANIPGWWEDKFAKAFVKMASVGVKTGYPGEIRRHCRVVN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0368000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g44550 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0368000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0019110 | SBH | 0.0 | 535.961670 | 0.518143 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0018940 | SBH | 0.0 | 7.621577 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0018970 | SBH | 0.0 | 383.812469 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0019020 | SBH | 0.0 | 2.250895 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0018800 | SBH | 0.0 | 19.246563 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0239800 | RBH | 0 | 0.2136985 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0018660 | SBH | 0.0 | 11.498784 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0240100 | RBH | 0.0204825 | 0 | 0.0089225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0018820 | SBH | 0.0 | 0.397958 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0018850 | SBH | 0.0 | 6.876564 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0018910 | SBH | 0.0 | 37.809147 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0018780 | SBH | 0.0 | 10.266574 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0018690 | SBH | 0.0 | 97.207787 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G018780 | SBH | 0.0 | 20.253796 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0018650 | SBH | 0.0 | 24.672430 | 0.0 |
