Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g18630 | OGI:03028110 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:10437714-10440502 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGGCGGTGCCGGCGGGCGGGCAGCCGTCGGACGGCGTGGTGATCGCGCAGGCCGACCTGCAGGGTTTGCAGGCGATCCGGCAAGCGCTGGTTGACCCGCGCGGGTTCCTGCGCGGGTGGAACGGCACGGGGCTCGACGCGTGCTCCGGCGGGTGGGCCGGGATCAAGTGCGCGCAGGGGAAGGTGGTCGCCATCCAGCTCCCCTTCAAGGGCCTCGCCGGCGCGCTCTCCGACAAGGTCGGCCAGCTCACGGCGCTCCGCAAGCTCAGCCTCCACGACAACGCGCTCGGCGGGCAGCTCCCGGCCTCCCTCGGCTTCCTCCCCGAGCTCCGGGGCGTCTACCTCTTCAACAACCGCTTCGCCGGCGCCGTGCCGCCGCAGCTCGGCGGGTGCGCGCTCCTGCAGACGCTCGACCTCAGCGGCAACTTCCTCTCCGGCGCCGTCCCGGCCTCGCTCGCCAACGCCACCAGGCTCCTCAGGCTCAACCTCGCCTACAACAACCTCACCGGTGCCGTGCCATCCAGCCTCACCTCCCTCCCTTTCCTCGTGTCCCTTCAGCTCAGCAGCAACAATCTCAGCGGCGAGGTGCCACCCACCATTGGCAACCTCAGGATGCTCCACGAGCTTTCTCTTAGCTACAACCTGATCAGTGGTAGCATCCCTGATGGGATCGGGAGCCTCTCGGGGCTCCACAGCTTGGATCTTTCTAACAATCTGTTGAGTGGTAGCCTCCCTGCCTCACTCTGTAACCTCACCTCGCTCGTGGAGCTCAAGCTCGATGGCAATGACATCGGGGGTCACATACCTGACGCCATTGATGGGCTCAAGAACCTGACCAAGCTGTCCCTGAGGAGGAATGTCCTCGACGGCGAGATTCCGGCGACGGTCGGGAACATCTCGGCGCTGTCATTGCTCGACGTGTCGGAGAACAACCTCACCGGAGGGATACCGGAGTCGCTGAGCGGATTGAACAATCTGACATCCTTCAATGTGTCCTACAATAACCTGTCAGGGCCTGTGCCTGTAGCTCTTTCCAGCAAGTTCAATGCCAGCTCGTTCGCGGGAAACATCCAGCTCTGTGGGTACAATGGCTCCGCCATTTGCACCTCCATTTCCTCTCCAGCGACCATGGCGTCGCCGCCGGTGCCTTTGTCGCAGCGGCCAACACGGAAACTCAACAAGAGGGAGCTCATCTTTGCAGTCGGTGGCATCTGCTTGCTGTTCCTGCTCCTCTTCTGCTGCGTCCTCCTCTTCTGGAGGAAAGACAAGCAGGAGAGCGAGTCGCCCAAGAAGGGCGCCAAGGACGCCACCGCCAAGGCGGCGGCCGGGAAGTCCGGAGGCGGCGGTGGCGGCTCGGGCGGCGCCGGTGGTGACGGCGGCGGCAAGCTTGTCCACTTCGACGGGCCGCTCTCGTTCACGGCGGACGACCTGCTGTGCGCGACGGCGGAGATCCTGGGGAAGAGCACGTACGGGACGGTGTACAAGGCGACCATGGAGAATGGCACCTTCGTCGCGGTGAAGCGGCTCCGGGAGAAGATCGCCAAGAACCAGAAGGAGTTCGAGGCGGAGGTGAACGCGCTCGGCAAGCTCCGCCACCCCAACCTCCTCGCCCTCAGGGCCTACTACCTCGGCCCCAAGGGCGAGAAGCTCCTCGTCTTCGACTTCATGACCAAGGGCAACCTCACCTCCTTCCTCCATGGTAATCAAGCTCGTCTCCTCACCACAACGTTCTTCGGCTTCTTGTTTGTTTGCGTCCTCTGCCATTGCTTCCACGGCTCCGCCATTGACGTCGCTCTTGCGTGCTGCAGCTCGCGCCCCGGACAGCCCGGTGGACTGGCCGACGAGGATGAACATCGCGATGGGCGTGGCCCGTGGGCTGCACCACCTGCACGCGGAGGCGAGCATCGTGCACGGCAACCTGACGAGCAACAACATCCTGCTCGACGAGGGGAACGACGCCAGGATCGCCGACTGCGGCCTGTCGCGCCTCATGAACGCCACGGCCAACTCCAACGTCATCGCCGCGGCGGGCGCGCTGGGCTACCGCGCGCCGGAGCTCTCCAAGCTGAAGAAGGCCAACGCCAAGACGGACATCTACAGCCTCGGCATGATCATGCTCGAGCTCCTCACCGGCAAGTCGCCCGGCGACACGACCAACGGCCTCGACCTGCCGCAGTGGGTGGCCTCTGTCGTGGAGGAGGAGTGGACCAACGAGGTGTTCGACCTTGAGCTCATGAAGGACGCGGCCGCCGCGGGCTCGGAGACCGGCGAGGAGCTCGTGAAGACGCTCAAGCTGGCGCTGCACTGCGTCGATCCTTCACCGGCGGCGAGGCCAGAGGCCCAGCAGGTTCTCAGACAGCTCGAGCAGATCAAGCCCTCGGTGGCAGTATCGGCCTCCTCGTCCTTCACCGGCGAGCCGAGCCAAACCACCGCGACGGCGACGACGATCACCGACGACACAAAATCGACTATTACAGAGTAGTCAGCCTCTTGCAGACTGAAAAGTTTCGGTTCTTAGTTACTTCAGATCATCAATAAGTAGACTCCATAGTCTATTTTTCGGTCTGTATATAAGGCTTTTAGGGGGGTTAGGAGAATTTTGGTGCTCATGCCATTCTTTGATTCCTGAATTCTTTTGTATCTGCCAGAAGCACTCCTTGTTATCAGAAGATGATATGGGAGTGCTGGCTTCTCATTAAGTTTCAGGCAAACTTGTAGTGCTTCAGCACTTAATGCATTGCAAAAATTTGTCATTCCAAAGCAATCGATTCATCTCTATGGATAAA
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| CDS seq | ATGGCGGCGGTGCCGGCGGGCGGGCAGCCGTCGGACGGCGTGGTGATCGCGCAGGCCGACCTGCAGGGTTTGCAGGCGATCCGGCAAGCGCTGGTTGACCCGCGCGGGTTCCTGCGCGGGTGGAACGGCACGGGGCTCGACGCGTGCTCCGGCGGGTGGGCCGGGATCAAGTGCGCGCAGGGGAAGGTGGTCGCCATCCAGCTCCCCTTCAAGGGCCTCGCCGGCGCGCTCTCCGACAAGGTCGGCCAGCTCACGGCGCTCCGCAAGCTCAGCCTCCACGACAACGCGCTCGGCGGGCAGCTCCCGGCCTCCCTCGGCTTCCTCCCCGAGCTCCGGGGCGTCTACCTCTTCAACAACCGCTTCGCCGGCGCCGTGCCGCCGCAGCTCGGCGGGTGCGCGCTCCTGCAGACGCTCGACCTCAGCGGCAACTTCCTCTCCGGCGCCGTCCCGGCCTCGCTCGCCAACGCCACCAGGCTCCTCAGGCTCAACCTCGCCTACAACAACCTCACCGGTGCCGTGCCATCCAGCCTCACCTCCCTCCCTTTCCTCGTGTCCCTTCAGCTCAGCAGCAACAATCTCAGCGGCGAGGTGCCACCCACCATTGGCAACCTCAGGATGCTCCACGAGCTTTCTCTTAGCTACAACCTGATCAGTGGTAGCATCCCTGATGGGATCGGGAGCCTCTCGGGGCTCCACAGCTTGGATCTTTCTAACAATCTGTTGAGTGGTAGCCTCCCTGCCTCACTCTGTAACCTCACCTCGCTCGTGGAGCTCAAGCTCGATGGCAATGACATCGGGGGTCACATACCTGACGCCATTGATGGGCTCAAGAACCTGACCAAGCTGTCCCTGAGGAGGAATGTCCTCGACGGCGAGATTCCGGCGACGGTCGGGAACATCTCGGCGCTGTCATTGCTCGACGTGTCGGAGAACAACCTCACCGGAGGGATACCGGAGTCGCTGAGCGGATTGAACAATCTGACATCCTTCAATGTGTCCTACAATAACCTGTCAGGGCCTGTGCCTGTAGCTCTTTCCAGCAAGTTCAATGCCAGCTCGTTCGCGGGAAACATCCAGCTCTGTGGGTACAATGGCTCCGCCATTTGCACCTCCATTTCCTCTCCAGCGACCATGGCGTCGCCGCCGGTGCCTTTGTCGCAGCGGCCAACACGGAAACTCAACAAGAGGGAGCTCATCTTTGCAGTCGGTGGCATCTGCTTGCTGTTCCTGCTCCTCTTCTGCTGCGTCCTCCTCTTCTGGAGGAAAGACAAGCAGGAGAGCGAGTCGCCCAAGAAGGGCGCCAAGGACGCCACCGCCAAGGCGGCGGCCGGGAAGTCCGGAGGCGGCGGTGGCGGCTCGGGCGGCGCCGGTGGTGACGGCGGCGGCAAGCTTGTCCACTTCGACGGGCCGCTCTCGTTCACGGCGGACGACCTGCTGTGCGCGACGGCGGAGATCCTGGGGAAGAGCACGTACGGGACGGTGTACAAGGCGACCATGGAGAATGGCACCTTCGTCGCGGTGAAGCGGCTCCGGGAGAAGATCGCCAAGAACCAGAAGGAGTTCGAGGCGGAGGTGAACGCGCTCGGCAAGCTCCGCCACCCCAACCTCCTCGCCCTCAGGGCCTACTACCTCGGCCCCAAGGGCGAGAAGCTCCTCGTCTTCGACTTCATGACCAAGGGCAACCTCACCTCCTTCCTCCATGCTCGCGCCCCGGACAGCCCGGTGGACTGGCCGACGAGGATGAACATCGCGATGGGCGTGGCCCGTGGGCTGCACCACCTGCACGCGGAGGCGAGCATCGTGCACGGCAACCTGACGAGCAACAACATCCTGCTCGACGAGGGGAACGACGCCAGGATCGCCGACTGCGGCCTGTCGCGCCTCATGAACGCCACGGCCAACTCCAACGTCATCGCCGCGGCGGGCGCGCTGGGCTACCGCGCGCCGGAGCTCTCCAAGCTGAAGAAGGCCAACGCCAAGACGGACATCTACAGCCTCGGCATGATCATGCTCGAGCTCCTCACCGGCAAGTCGCCCGGCGACACGACCAACGGCCTCGACCTGCCGCAGTGGGTGGCCTCTGTCGTGGAGGAGGAGTGGACCAACGAGGTGTTCGACCTTGAGCTCATGAAGGACGCGGCCGCCGCGGGCTCGGAGACCGGCGAGGAGCTCGTGAAGACGCTCAAGCTGGCGCTGCACTGCGTCGATCCTTCACCGGCGGCGAGGCCAGAGGCCCAGCAGGTTCTCAGACAGCTCGAGCAGATCAAGCCCTCGGTGGCAGTATCGGCCTCCTCGTCCTTCACCGGCGAGCCGAGCCAAACCACCGCGACGGCGACGACGATCACCGACGACACAAAATCGACTATTACAGAGTAG
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| Protein seq | MAAVPAGGQPSDGVVIAQADLQGLQAIRQALVDPRGFLRGWNGTGLDACSGGWAGIKCAQGKVVAIQLPFKGLAGALSDKVGQLTALRKLSLHDNALGGQLPASLGFLPELRGVYLFNNRFAGAVPPQLGGCALLQTLDLSGNFLSGAVPASLANATRLLRLNLAYNNLTGAVPSSLTSLPFLVSLQLSSNNLSGEVPPTIGNLRMLHELSLSYNLISGSIPDGIGSLSGLHSLDLSNNLLSGSLPASLCNLTSLVELKLDGNDIGGHIPDAIDGLKNLTKLSLRRNVLDGEIPATVGNISALSLLDVSENNLTGGIPESLSGLNNLTSFNVSYNNLSGPVPVALSSKFNASSFAGNIQLCGYNGSAICTSISSPATMASPPVPLSQRPTRKLNKRELIFAVGGICLLFLLLFCCVLLFWRKDKQESESPKKGAKDATAKAAAGKSGGGGGGSGGAGGDGGGKLVHFDGPLSFTADDLLCATAEILGKSTYGTVYKATMENGTFVAVKRLREKIAKNQKEFEAEVNALGKLRHPNLLALRAYYLGPKGEKLLVFDFMTKGNLTSFLHARAPDSPVDWPTRMNIAMGVARGLHHLHAEASIVHGNLTSNNILLDEGNDARIADCGLSRLMNATANSNVIAAAGALGYRAPELSKLKKANAKTDIYSLGMIMLELLTGKSPGDTTNGLDLPQWVASVVEEEWTNEVFDLELMKDAAAAGSETGEELVKTLKLALHCVDPSPAARPEAQQVLRQLEQIKPSVAVSASSSFTGEPSQTTATATTITDDTKSTITE |
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| Function | Probable leucine-rich repeat receptor-like protein kinase IMK3 [UniProtKB/Swiss-Prot:C0LGP9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g18630 | LOC_Os03g18630.1 | Chr03 | 10437714 | 10440502 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGGCGGTGCCGGCGGGCGGGCAGCCGTCGGACGGCGTGGTGATCGCGCAGGCCGACCTGCAGGGTTTGCAGGCGATCCGGCAAGCGCTGGTTGACCCGCGCGGGTTCCTGCGCGGGTGGAACGGCACGGGGCTCGACGCGTGCTCCGGCGGGTGGGCCGGGATCAAGTGCGCGCAGGGGAAGGTGGTCGCCATCCAGCTCCCCTTCAAGGGCCTCGCCGGCGCGCTCTCCGACAAGGTCGGCCAGCTCACGGCGCTCCGCAAGCTCAGCCTCCACGACAACGCGCTCGGCGGGCAGCTCCCGGCCTCCCTCGGCTTCCTCCCCGAGCTCCGGGGCGTCTACCTCTTCAACAACCGCTTCGCCGGCGCCGTGCCGCCGCAGCTCGGCGGGTGCGCGCTCCTGCAGACGCTCGACCTCAGCGGCAACTTCCTCTCCGGCGCCGTCCCGGCCTCGCTCGCCAACGCCACCAGGCTCCTCAGGCTCAACCTCGCCTACAACAACCTCACCGGTGCCGTGCCATCCAGCCTCACCTCCCTCCCTTTCCTCGTGTCCCTTCAGCTCAGCAGCAACAATCTCAGCGGCGAGGTGCCACCCACCATTGGCAACCTCAGGATGCTCCACGAGCTTTCTCTTAGCTACAACCTGATCAGTGGTAGCATCCCTGATGGGATCGGGAGCCTCTCGGGGCTCCACAGCTTGGATCTTTCTAACAATCTGTTGAGTGGTAGCCTCCCTGCCTCACTCTGTAACCTCACCTCGCTCGTGGAGCTCAAGCTCGATGGCAATGACATCGGGGGTCACATACCTGACGCCATTGATGGGCTCAAGAACCTGACCAAGCTGTCCCTGAGGAGGAATGTCCTCGACGGCGAGATTCCGGCGACGGTCGGGAACATCTCGGCGCTGTCATTGCTCGACGTGTCGGAGAACAACCTCACCGGAGGGATACCGGAGTCGCTGAGCGGATTGAACAATCTGACATCCTTCAATGTGTCCTACAATAACCTGTCAGGGCCTGTGCCTGTAGCTCTTTCCAGCAAGTTCAATGCCAGCTCGTTCGCGGGAAACATCCAGCTCTGTGGGTACAATGGCTCCGCCATTTGCACCTCCATTTCCTCTCCAGCGACCATGGCGTCGCCGCCGGTGCCTTTGTCGCAGCGGCCAACACGGAAACTCAACAAGAGGGAGCTCATCTTTGCAGTCGGTGGCATCTGCTTGCTGTTCCTGCTCCTCTTCTGCTGCGTCCTCCTCTTCTGGAGGAAAGACAAGCAGGAGAGCGAGTCGCCCAAGAAGGGCGCCAAGGACGCCACCGCCAAGGCGGCGGCCGGGAAGTCCGGAGGCGGCGGTGGCGGCTCGGGCGGCGCCGGTGGTGACGGCGGCGGCAAGCTTGTCCACTTCGACGGGCCGCTCTCGTTCACGGCGGACGACCTGCTGTGCGCGACGGCGGAGATCCTGGGGAAGAGCACGTACGGGACGGTGTACAAGGCGACCATGGAGAATGGCACCTTCGTCGCGGTGAAGCGGCTCCGGGAGAAGATCGCCAAGAACCAGAAGGAGTTCGAGGCGGAGGTGAACGCGCTCGGCAAGCTCCGCCACCCCAACCTCCTCGCCCTCAGGGCCTACTACCTCGGCCCCAAGGGCGAGAAGCTCCTCGTCTTCGACTTCATGACCAAGGGCAACCTCACCTCCTTCCTCCATGCTCGCGCCCCGGACAGCCCGGTGGACTGGCCGACGAGGATGAACATCGCGATGGGCGTGGCCCGTGGGCTGCACCACCTGCACGCGGAGGCGAGCATCGTGCACGGCAACCTGACGAGCAACAACATCCTGCTCGACGAGGGGAACGACGCCAGGATCGCCGACTGCGGCCTGTCGCGCCTCATGAACGCCACGGCCAACTCCAACGTCATCGCCGCGGCGGGCGCGCTGGGCTACCGCGCGCCGGAGCTCTCCAAGCTGAAGAAGGCCAACGCCAAGACGGACATCTACAGCCTCGGCATGATCATGCTCGAGCTCCTCACCGGCAAGTCGCCCGGCGACACGACCAACGGCCTCGACCTGCCGCAGTGGGTGGCCTCTGTCGTGGAGGAGGAGTGGACCAACGAGGTGTTCGACCTTGAGCTCATGAAGGACGCGGCCGCCGCGGGCTCGGAGACCGGCGAGGAGCTCGTGAAGACGCTCAAGCTGGCGCTGCACTGCGTCGATCCTTCACCGGCGGCGAGGCCAGAGGCCCAGCAGGTTCTCAGACAGCTCGAGCAGATCAAGCCCTCGGTGGCAGTATCGGCCTCCTCGTCCTTCACCGGCGAGCCGAGCCAAACCACCGCGACGGCGACGACGATCACCGACGACACAAAATCGACTATTACAGAGTAG
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| Protein seq | MAAVPAGGQPSDGVVIAQADLQGLQAIRQALVDPRGFLRGWNGTGLDACSGGWAGIKCAQGKVVAIQLPFKGLAGALSDKVGQLTALRKLSLHDNALGGQLPASLGFLPELRGVYLFNNRFAGAVPPQLGGCALLQTLDLSGNFLSGAVPASLANATRLLRLNLAYNNLTGAVPSSLTSLPFLVSLQLSSNNLSGEVPPTIGNLRMLHELSLSYNLISGSIPDGIGSLSGLHSLDLSNNLLSGSLPASLCNLTSLVELKLDGNDIGGHIPDAIDGLKNLTKLSLRRNVLDGEIPATVGNISALSLLDVSENNLTGGIPESLSGLNNLTSFNVSYNNLSGPVPVALSSKFNASSFAGNIQLCGYNGSAICTSISSPATMASPPVPLSQRPTRKLNKRELIFAVGGICLLFLLLFCCVLLFWRKDKQESESPKKGAKDATAKAAAGKSGGGGGGSGGAGGDGGGKLVHFDGPLSFTADDLLCATAEILGKSTYGTVYKATMENGTFVAVKRLREKIAKNQKEFEAEVNALGKLRHPNLLALRAYYLGPKGEKLLVFDFMTKGNLTSFLHARAPDSPVDWPTRMNIAMGVARGLHHLHAEASIVHGNLTSNNILLDEGNDARIADCGLSRLMNATANSNVIAAAGALGYRAPELSKLKKANAKTDIYSLGMIMLELLTGKSPGDTTNGLDLPQWVASVVEEEWTNEVFDLELMKDAAAAGSETGEELVKTLKLALHCVDPSPAARPEAQQVLRQLEQIKPSVAVSASSSFTGEPSQTTATATTITDDTKSTITE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.056822 | 0.412843 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0297800 | RBH | 0.0 | 0.000000 | 0.857844 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g49470 | SBH | 0.075562 | 0.0 | 0.245120 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0297800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0014400 | RBH | 0.0 | 4.532435 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0014210 | RBH | 0.0 | 5.999477 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0014240 | RBH | 0.0 | 7.792906 | 0.243867 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0014220 | RBH | 0.0 | 0.797277 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0014010 | RBH | 0.0 | 26.646376 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0176700 | RBH | 3.829431 | 1.844762 | 0.533521 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0013910 | RBH | 0.0 | 0.902631 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0178400 | RBH | 2.7967815 | 0.0638115 | 4.817824 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0014160 | RBH | 0.0 | 0.268528 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0014140 | RBH | 0.0 | 13.114566 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0014220 | RBH | 0.0 | 18.670811 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0014050 | RBH | 0.0 | 1.317184 | 0.079891 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0014030 | RBH | 0.0 | 9.357512 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G013960 | RBH | 0.0 | 9.103298 | 0.495136 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0013870 | RBH | 0.0 | 9.295285 | 0.476729 |
