Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os03g18480 | OGI:03027940 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr03:10362913-10365264 | ||||||||
| Gene Symbol | TDF1, OsTDF1, MYB35, OsMYB35 | ||||||||||
| DNA seq | AAATCGAAATGGGGATCGGATATAATCGTAGTCTCGTAGACACCAGAACGGATCGATGAGTTAATACGCACGAGTTAAGTATAATTAGCAACCCCAGCCGAGCTCCGACGAGGAGGAGCCGCCACCGCCGCCGTAGTATGCCGGGTCGGCGAGCATCTCGGCGATGAGCTGGTCCACCCCCATCTCCTTGTCGCAGTCGAGGATCGCGTCAATGAACGCCGACGCAGCCCCGGCGCCGTCGTCCGTGCCGGCGCCGACGCCAGCTGATGCACCGTCGACGTCACCGAACGCGCGGCCTCCGCCCACGACGGCAGTCGCCGCCGGTGCTGACCCCTCCTGATACTGGCCGAGAGCAGCCTGCGGCGCCGGCGCGTCGGCGCCGTGCCCCGCGGCGTCGTCGGCGAGGAAGTCGCTCCAGTTGAGCTGCAGATGCTGCGAGTCGGGCGACGCGGGCGCGTCGGCGTCGACGTGCGTGACGACCTGCTGCTGCTGATGCTGATGCTGCAGGGCGGCGAAGTACGGCGCGTCGTGGAACACCGGGAGGCAGGGCGGCGGCGCGGCGCCGGCGGCGGGAGGGGGGCGGATGGCGAGCGTGCCGATGCTCTGCATGAGGTCGGCGATGGGGCGGTGGGTGATGGGGTCGATGCCACGCTGCCGCAGCTTCTTGCTCAGCTTGGTGTTCCAGTAGTTCTTCACGTCGTTGTCCGTCCTCCCCGGCAGCTGGTTCGCGATCAGCGACCACCTGCCAATCACGCGCATTTGATTGATGCACGCGCACAACTTTGGTTATACTCCCTCGGATGTTTTTGACTTAGATAAAAGTTAAACTGCTTCAAGTTTGATTAATTTGATAGAAAAAATAATAATATTTTTGACTTAAGATAAATTTATTATAAAAATATATTTTATTATTAATTTAATAAAACTAATTTGGTAATGTAAATATTACTATATTTGTCTATAAACTTAGTCAAATTTAAAACAGTTTAACTTTGATCAAAGTTAAAATATCTTATAATCTGAAACGGATGGAGTAGAAATTACATGCATGCTCAATGATCTCAGTCCAAATTGTGTGTTGATGTGTCAAACTAGCTCCCATTTCTGATTGAGGGTAGAGATGATCTCGCAGCATTTGTTTAGAGTGTAAAATAACTAGTGCTAGTATTAACTAAGTTAATTAGTAGTACAGTACTAATTAACTGTGAATAGTGGCGTTACATGCATTGTGTGTGTATCAGTTTGTTACCGCTCAGGGATCTTGATTATTTTGTCATGCCATTTTCGTTCACATCTAGGTTGATTCCATAAAATTTTTAGAACATTAAATGTAAATGCTAATTGCATCAGCATCATACTGCCAAAGTACATTAGAGCAGCCAATTATGTGCACTAGCTATTTATCTCATGTTAGGATTCAAGGGAATTACTCCCTCCGTCTTATTATACGTGCAGCTATAAGTTTACGTGCCCAACATTTAATTGTCCGTCTTATTTAAAAAGTTTATGAATTTTTTTTAAAAGTTAAGACACGCATAAAGTACTGTTCATATTTTATCATCTAATAACAATAAAAAAAATACTAATCATTAAAATATTTTAAATAAGATTGTTAGATAAAGTTGGACACTGAAACCTATAATTACGCTTATTATAGGATCAAGGTAGTTCGCAACATGCTTAGCATTACACGCAGAAATCAGATACAAATCACGAACACCGATTCGCCAAATCTGAGTCGATGACAAACTAGCACGTGGATTATCAATTCGAAAACAGCAACGACAGATCAATCAAGCAGGAGGGTCCAACGGACGGAGTGTATTACACCACTCACCACACATGCAAAAGCATGGTGACGTCTGAAATGACGAGATAACGGGACAAGCTGAGCGTAACACGATGATATACCTGCTGCCCAGCATGGCGTGGAGGGTGACGATGAGCTCTTCCTCCTCCTGCGTGAAGTTCTCGTGCTTCAGGTTGGGCCTCAGGTAGTTGGTGTACCTCAGCCTGCAGCTCTTCCCGCACCTCTTCAAACCTGCACCCACATCACCCCCCATGCAATTTTTACAGAACAAAACAAAAGGGAAAAAAAAGTGATAAACAATGACACCATATTTTGATCTGATCTGATGTGATCAAATGCGTCTCTAATTGCAATCTCGATCCCATCGGCAGCAGCAGCAACGGCGATCGATATCGTTGATTTTCACGACCTGCTCGCTGAGGAACGGAGGTCCAGTTGCCGGTGCCGTGGGTGGAGGTGTACGCCAGCAGCTTGGCGTCCTCCTCCGCCGTCCACGGCCCCTTCTTCACGTTCGCCTTGTCGCAGCACGGCGGCCGCCCCAT
More
|
||||||||||
| CDS seq | ATGGGGCGGCCGCCGTGCTGCGACAAGGCGAACGTGAAGAAGGGGCCGTGGACGGCGGAGGAGGACGCCAAGCTGCTGGCGTACACCTCCACCCACGGCACCGGCAACTGGACCTCCGTTCCTCAGCGAGCAGGTTTGAAGAGGTGCGGGAAGAGCTGCAGGCTGAGGTACACCAACTACCTGAGGCCCAACCTGAAGCACGAGAACTTCACGCAGGAGGAGGAAGAGCTCATCGTCACCCTCCACGCCATGCTGGGCAGCAGGTGGTCGCTGATCGCGAACCAGCTGCCGGGGAGGACGGACAACGACGTGAAGAACTACTGGAACACCAAGCTGAGCAAGAAGCTGCGGCAGCGTGGCATCGACCCCATCACCCACCGCCCCATCGCCGACCTCATGCAGAGCATCGGCACGCTCGCCATCCGCCCCCCTCCCGCCGCCGGCGCCGCGCCGCCGCCCTGCCTCCCGGTGTTCCACGACGCGCCGTACTTCGCCGCCCTGCAGCATCAGCATCAGCAGCAGCAGGTCGTCACGCACGTCGACGCCGACGCGCCCGCGTCGCCCGACTCGCAGCATCTGCAGCTCAACTGGAGCGACTTCCTCGCCGACGACGCCGCGGGGCACGGCGCCGACGCGCCGGCGCCGCAGGCTGCTCTCGGCCAGTATCAGGAGGGGTCAGCACCGGCGGCGACTGCCGTCGTGGGCGGAGGCCGCGCGTTCGGTGACGTCGACGGTGCATCAGCTGGCGTCGGCGCCGGCACGGACGACGGCGCCGGGGCTGCGTCGGCGTTCATTGACGCGATCCTCGACTGCGACAAGGAGATGGGGGTGGACCAGCTCATCGCCGAGATGCTCGCCGACCCGGCATACTACGGCGGCGGTGGCGGCTCCTCCTCGTCGGAGCTCGGCTGGGGTTGCTAA
More
|
||||||||||
| Protein seq | MGRPPCCDKANVKKGPWTAEEDAKLLAYTSTHGTGNWTSVPQRAGLKRCGKSCRLRYTNYLRPNLKHENFTQEEEELIVTLHAMLGSRWSLIANQLPGRTDNDVKNYWNTKLSKKLRQRGIDPITHRPIADLMQSIGTLAIRPPPAAGAAPPPCLPVFHDAPYFAALQHQHQQQQVVTHVDADAPASPDSQHLQLNWSDFLADDAAGHGADAPAPQAALGQYQEGSAPAATAVVGGGRAFGDVDGASAGVGAGTDDGAGAASAFIDAILDCDKEMGVDQLIAEMLADPAYYGGGGGSSSSELGWGC |
||||||||||
| Function | Transcription factor MYB80 [UniProtKB/Swiss-Prot:Q9XHV0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os03g18480 | LOC_Os03g18480.1 | Chr03 | 10362913 | 10365264 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGGCGGCCGCCGTGCTGCGACAAGGCGAACGTGAAGAAGGGGCCGTGGACGGCGGAGGAGGACGCCAAGCTGCTGGCGTACACCTCCACCCACGGCACCGGCAACTGGACCTCCGTTCCTCAGCGAGCAGGTTTGAAGAGGTGCGGGAAGAGCTGCAGGCTGAGGTACACCAACTACCTGAGGCCCAACCTGAAGCACGAGAACTTCACGCAGGAGGAGGAAGAGCTCATCGTCACCCTCCACGCCATGCTGGGCAGCAGGTGGTCGCTGATCGCGAACCAGCTGCCGGGGAGGACGGACAACGACGTGAAGAACTACTGGAACACCAAGCTGAGCAAGAAGCTGCGGCAGCGTGGCATCGACCCCATCACCCACCGCCCCATCGCCGACCTCATGCAGAGCATCGGCACGCTCGCCATCCGCCCCCCTCCCGCCGCCGGCGCCGCGCCGCCGCCCTGCCTCCCGGTGTTCCACGACGCGCCGTACTTCGCCGCCCTGCAGCATCAGCATCAGCAGCAGCAGGTCGTCACGCACGTCGACGCCGACGCGCCCGCGTCGCCCGACTCGCAGCATCTGCAGCTCAACTGGAGCGACTTCCTCGCCGACGACGCCGCGGGGCACGGCGCCGACGCGCCGGCGCCGCAGGCTGCTCTCGGCCAGTATCAGGAGGGGTCAGCACCGGCGGCGACTGCCGTCGTGGGCGGAGGCCGCGCGTTCGGTGACGTCGACGGTGCATCAGCTGGCGTCGGCGCCGGCACGGACGACGGCGCCGGGGCTGCGTCGGCGTTCATTGACGCGATCCTCGACTGCGACAAGGAGATGGGGGTGGACCAGCTCATCGCCGAGATGCTCGCCGACCCGGCATACTACGGCGGCGGTGGCGGCTCCTCCTCGTCGGAGCTCGGCTGGGGTTGCTAA
More
|
|||||||
| Protein seq | MGRPPCCDKANVKKGPWTAEEDAKLLAYTSTHGTGNWTSVPQRAGLKRCGKSCRLRYTNYLRPNLKHENFTQEEEELIVTLHAMLGSRWSLIANQLPGRTDNDVKNYWNTKLSKKLRQRGIDPITHRPIADLMQSIGTLAIRPPPAAGAAPPPCLPVFHDAPYFAALQHQHQQQQVVTHVDADAPASPDSQHLQLNWSDFLADDAAGHGADAPAPQAALGQYQEGSAPAATAVVGGGRAFGDVDGASAGVGAGTDDGAGAASAFIDAILDCDKEMGVDQLIAEMLADPAYYGGGGGSSSSELGWGC
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0296000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0296000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0014250 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0014070 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0014090 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0014070 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0013860 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0175400 | RBH | 0 | 0.01108 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0013760 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0177000 | RBH | 0 | 0.0202395 | 0.1126215 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0014010 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0013990 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0014070 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0013900 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0013880 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G013810 | RBH | 0.0 | 0.0 | 1.182836 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0013710 | RBH | 0.0 | 0.0 | 0.0 |
